VariantTable
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cursor point :
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On read coverage region : Click to browse alignment view.
name
Hmgcs2 (ENSMUSG00000027875)
type
gene
link
VEGA
Ensembl
MGI
xref
definition
locus_tag
: Hmgcs2
note
: 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 [Source:MGI Symbol;Acc:MGI:101939]
name
Hmgcs2 (ENSMUSG00000027875)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000120541
name
Hmgcs2 (ENSMUSG00000027875)
type
mRNA
link
VEGA
Ensembl
MGI
xref
definition
note
: transcript_id=ENSMUST00000090746
name
Hmgcs2 (ENSMUSG00000027875)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17662.1
Uniprot/SWISSPROT:
P54869
Vega_transcript:
Hmgcs2-002
Vega_transcript:
OTTMUST00000065218
UCSC:uc008qpr.2
Fantom:
1300002P16
Fantom:
1300004J23
EMBL:
AK004865
EMBL:
AK004902
EMBL:
BC014714
EMBL:
BC024744
EMBL:
U12790
EMBL:
U12791
GO:
GO:0004421
GO:
GO:0005739
GO:
GO:0005743
GO:
GO:0006695
GO:
GO:0008299
MGI_trans_name:
Hmgcs2-002
Vega_translation:
188260
Vega_translation:
OTTMUSP00000032468
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0006629
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016746
goslim_goa:
GO:0043226
goslim_goa:
GO:0044281
protein_id:
AAA92675.1
protein_id:
AAA92676.1
protein_id:
AAH14714.1
protein_id:
AAH24744.1
protein_id:
BAB23626.1
protein_id:
BAB23657.1
OTTP:
OTTMUSP00000032468
OTTT:
OTTMUST00000065218
Reactome:
R-MMU-1430728
Reactome:
R-MMU-535734
Reactome:
R-MMU-556833
Reactome:
R-MMU-74182
Reactome:
R-MMU-77111
UniParc:
UPI00000E663E
definition
note
: transcript_id=ENSMUST00000120541
protein_id
: ENSMUSP00000113296
translation
: MQRLLAPARRVLQVKRAMQETSLTPAHLLSAAQQRFSTIPPAPLAKTDTWPKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETYTNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARCPV
name
Hmgcs2 (ENSMUSG00000027875)
(Detail)
type
CDS
link
VEGA
Ensembl
MGI
xref
CCDS:
CCDS17662.1
Uniprot/SWISSPROT:
P54869
RefSeq_peptide:
NP_032282
RefSeq_mRNA:
NM_008256.4
Vega_transcript:
Hmgcs2-001
Vega_transcript:
OTTMUST00000065217
UCSC:uc008qpr.2
Fantom:
1300002P16
Fantom:
1300004J23
EMBL:
AK004865
EMBL:
AK004902
EMBL:
BC014714
EMBL:
BC024744
EMBL:
U12790
EMBL:
U12791
GO:
GO:0001822
GO:
GO:0001889
GO:
GO:0004421
GO:
GO:0004421
GO:
GO:0005739
GO:
GO:0005743
GO:
GO:0005759
GO:
GO:0006695
GO:
GO:0007420
GO:
GO:0007494
GO:
GO:0007584
GO:
GO:0008299
GO:
GO:0009266
GO:
GO:0009617
GO:
GO:0010038
GO:
GO:0014070
GO:
GO:0030324
GO:
GO:0032868
GO:
GO:0032869
GO:
GO:0032870
GO:
GO:0033555
GO:
GO:0033574
GO:
GO:0033762
GO:
GO:0034014
GO:
GO:0034284
GO:
GO:0034696
GO:
GO:0042493
GO:
GO:0042594
GO:
GO:0043434
GO:
GO:0045471
GO:
GO:0046951
GO:
GO:0051384
GO:
GO:0051591
GO:
GO:0060416
GO:
GO:0060612
GO:
GO:0070542
GO:
GO:0070543
GO:
GO:0071222
GO:
GO:0071230
GO:
GO:0071385
GO:
GO:0071398
GO:
GO:0071407
MGI_trans_name:
Hmgcs2-001
Vega_translation:
188261
Vega_translation:
OTTMUSP00000032467
goslim_goa:
GO:0003674
goslim_goa:
GO:0005575
goslim_goa:
GO:0005622
goslim_goa:
GO:0005623
goslim_goa:
GO:0005737
goslim_goa:
GO:0005739
goslim_goa:
GO:0006629
goslim_goa:
GO:0008150
goslim_goa:
GO:0009058
goslim_goa:
GO:0016746
goslim_goa:
GO:0043226
goslim_goa:
GO:0044281
protein_id:
AAA92675.1
protein_id:
AAA92676.1
protein_id:
AAH14714.1
protein_id:
AAH24744.1
protein_id:
BAB23626.1
protein_id:
BAB23657.1
OTTP:
OTTMUSP00000032467
OTTT:
OTTMUST00000065217
Reactome:
R-MMU-1430728
Reactome:
R-MMU-535734
Reactome:
R-MMU-556833
Reactome:
R-MMU-74182
Reactome:
R-MMU-77111
UniParc:
UPI00000E663E
definition
note
: transcript_id=ENSMUST00000090746
protein_id
: ENSMUSP00000088249
translation
: MQRLLAPARRVLQVKRAMQETSLTPAHLLSAAQQRFSTIPPAPLAKTDTWPKDVGILALEVYFPAQYVDQTDLEKFNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERTKLPWDAVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSYWDGRYALVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLVLEQGLRGTHMENAYDFYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETYTNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARCPV
name
type
misc_feature
link
xref
definition
note
: contig AC121771.3 98582..190309(1)
Location
chromosome :
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
X
(Build: mm10)
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Annotation:
Gene
mRNA
CDS
genetic markers
Tracks
RefSeq genes :
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Gene, mRNA, CDS :
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MSM BAC end pairs :
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show
B6N BAC end pairs :
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show
MSMv4 :
not show
show
JF1v3 :
not show
show
KJRv1 :
not show
show
SWNv1 :
not show
show
CHDv1 :
not show
show
NJLv1 :
not show
show
BLG2v1 :
not show
show
HMIv1 :
not show
show
BFMv1 :
not show
show
PGNv1 :
not show
show
Click to browse alignment view.
BAC clone ordering.