BAC Information

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BAC

Clone NameB6Ng01-001A18
Chromosome1 (Build37)
Map Location 25,149,703 - 25,150,807
singlet/doubletsinglet
Overlap geneBai3
Upstream geneCol9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A18.bB6Ng01-001A18.g
ACCDH839475DH839476
length1,2101,085
definitionDH839475|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A18, 5' end.DH839476|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctacctattcaacattg
tacttgaagtcctagccagagcagatagacaacaaaaggagatcaagggg
atacaaattggaaaagaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccagcagagaactcctaaaac
tgataaacagctttggtgaagtagctggatataaaattaactcaaacaag
tcaatgtcctttctgtacacaaaggataaacaggctcagaaggaaattag
ggaaacaacacccttctcaatagtcacaaatagtataaaataccttggca
tgactctaactaaggaagtgaaagatctgtatgataagaacttcatgtct
ctgaagaaagaaattaaagaagatatcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaacttaattcttc
aaggaattagaaagagcagtctgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaatctctggtggaatca
ccatgactgacctaaagctttactacagagcaattgtgataaaaacggca
tggtactggtatagcgacagacaagtagaccaatggaacagaattgaaga
ccctaagatgaacccacacacctacggtcacttgatcttcgacaagggag
ctaaaaccatccagttgaaaaagacagcattttcacaaatggtgctggca
caactggtgggtatcatgtagaggatgtgaatgatccattgtactaatgt
caaatctagtggatcaggagctccacataatcaagacctgaacttataga
ggagaaagtggggaaaggcctcgaagattggcacagggaaaattctgaat
acacagcatgctgtgctgttcaggatctcgagattgacaatgggactcat
gaatgtcagctcgtagctaagactgaatagacaaagctctcagattggca
ggatccttac
gaattcaatatgaatccccccgtaatggaccagtttaatatgaacttaga
tcagcatcttgcaccccaggaacatatgcagaatttaccctttgagcctc
gcacagctgtgaagaatttcatggcctctgagttggatgataatgtggga
ctgtcaagaagtgaaactggatcaacgatatcaatgagttctctagaggt
gagtcagaagaggttaactagttccttgatatttgaagggtgtacaggct
gattcacatggtattgggattagagaagatctctgttagttttggcagtt
tctgatgttatgttaagattctggacagacaatttttctagtagtatatt
tgagtctgctgattgaaaatgttatttaaaggctaccagcgtgtttgagg
taataatcaaccctagttctctcataatgggactcttgtggaacattgta
aagaaaacagagcagagcctcttgaggtttccctgacatgacagggcatt
gtaaagcataaaatagtaattggattgtgttacagattcaaggatagatc
taaatcttcttttaaaagactgttaatatgaagttgagacgtttctgtgg
gttgtaccactacactgattataaactaattagtattatgttacatcaat
attattcagaatgaatgttttgttcttaatcctacagagtggtgaccatt
aaaagtattggtctttaactattaaaaactcaaagtatatattctaaata
tactaagactcatgactaagagccagacaacagcctttgccgttcatgaa
gccatcagcagtaaacaatgtaaactactttcatcttttttttcatctca
atgaagtagagcattattaacaattatcatctccattcctactgtactag
gattatagaagtagtatcaagaagtatacctgattttctattgcacattc
actactctagtatatactctctataaaaaacacacatgtattcttattat
ctattatcataatactctcatatgatatgtgctttatacaccacacaatg
tgtgggtgcatagtcactattaagacacctctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25149703_25150807
seq2: B6Ng01-001A18.g_68_1152 (reverse)

seq1  TACAGAGGTTTTTCTATAAATAGTGACTTATGCAACACACACATATGTGT  50
      ||||||||    | | | ||||||||| ||||| || ||||||| |||||
seq2  TACAGAGG----TGTCTTAATAGTGAC-TATGC-ACCCACACAT-TGTGT  43

seq1  GTGTGTATAAAACACATTATCATAATTGAGAGTATATATGATAAATAAGA  100
      | ||||||||| |||| |||||||  ||||||||| ||||||||   |||
seq2  G-GTGTATAAAGCACA-TATCATA--TGAGAGTAT-TATGATAA--TAGA  86

seq1  TAAATAAGAATACATGTGGTGTTTTTTTTATAGAGAGTATATACTAGGGT  150
      | |||||||||||||   |||| |||||||||||||||||||||||| ||
seq2  T-AATAAGAATACAT---GTGTGTTTTTTATAGAGAGTATATACTAGAGT  132

seq1  AGTGGAATGTGGCAATAGAAAATCAGGTATACTTCTTGATACCTACTTCT  200
      ||| |||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AGT-GAATGT-GCAATAGAAAATCAGGTATACTTCTTGATA-CTACTTCT  179

seq1  ATAATCCTAGTACAGTAGGAATGAGGATGATAATTGTTAATAATGCTCTA  250
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ATAATCCTAGTACAGTAGGAATGGAGATGATAATTGTTAATAATGCTCTA  229

seq1  CTTCATTGAGATG-AAAAAAAGATGAAAGTAGTTTACATTGTTTACTGCT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGAGATGAAAAAAAAGATGAAAGTAGTTTACATTGTTTACTGCT  279

seq1  GATGGCCTCATGAACGGCAAAGGCTGTTGTCTGGCTCTTAGTCCTGAGTC  349
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GATGGCTTCATGAACGGCAAAGGCTGTTGTCTGGCTCTTAGTCATGAGTC  329

seq1  TTAGTATATTTAGAATATATACTTTGAGTTTTTAATAGTTAAAGACCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATATTTAGAATATATACTTTGAGTTTTTAATAGTTAAAGACCAAT  379

seq1  ACTTTTAATGGTCACCACTCTGTAGGATTAAGAACAAAACATTCATTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATGGTCACCACTCTGTAGGATTAAGAACAAAACATTCATTCTG  429

seq1  AATAATATTGATGTAACATAATACTAATTAGTTTATAATCAGTGTAGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTGATGTAACATAATACTAATTAGTTTATAATCAGTGTAGTGG  479

seq1  TACAACCCACAGAAACGTCTCAACTTCATATTAACAGTCTTTTAAAAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCCACAGAAACGTCTCAACTTCATATTAACAGTCTTTTAAAAGAA  529

seq1  GATTTAGATCTATCCTTGAATCTGTAACACAATCCAATTACTATTTTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGATCTATCCTTGAATCTGTAACACAATCCAATTACTATTTTATG  579

seq1  CTTTACAATGCCCTGTCATGTCAGGGAAACCTCAAGAGGCTCTGCTCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAATGCCCTGTCATGTCAGGGAAACCTCAAGAGGCTCTGCTCTGT  629

seq1  TTTCTTTACAATGTTCCACAAGAGTCCCATTATGAGAGAACTAGGGTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTACAATGTTCCACAAGAGTCCCATTATGAGAGAACTAGGGTTGA  679

seq1  TTATTACCTCAAACACGCTGGTAGCCTTTAAATAACATTTTCAATCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCTCAAACACGCTGGTAGCCTTTAAATAACATTTTCAATCAGCA  729

seq1  GACTCAAATATACTACTAGAAAAATTGTCTGTCCAGAATCTTAACATAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAATATACTACTAGAAAAATTGTCTGTCCAGAATCTTAACATAAC  779

seq1  ATCAGAAACTGCCAAAACTAACAGAGATCTTCTCTAATCCCAATACCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACTGCCAAAACTAACAGAGATCTTCTCTAATCCCAATACCATG  829

seq1  TGAATCAGCCTGTACACCCTTCAAATATCAAGGAACTAGTTAACCTCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGCCTGTACACCCTTCAAATATCAAGGAACTAGTTAACCTCTTC  879

seq1  TGACTCACCTCTAGAGAACTCATTGATATCGTTGATCCAGTTTCACTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACCTCTAGAGAACTCATTGATATCGTTGATCCAGTTTCACTTCT  929

seq1  TGACAGTCCCACATTATCATCCAACTCAGAGGCCATGAAATTCTTCACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTCCCACATTATCATCCAACTCAGAGGCCATGAAATTCTTCACAG  979

seq1  CTGTGCGAGGCTCAAAGGGTAAATTCTGCATATGTTCCTGGGGTGCAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGAGGCTCAAAGGGTAAATTCTGCATATGTTCCTGGGGTGCAAGA  1029

seq1  TGCTGATCTAAGTTCATATTAAACTGGTCCATTACGGGGGGATTCATATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCTAAGTTCATATTAAACTGGTCCATTACGGGGGGATTCATATT  1079

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1085