BAC Information

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BAC

Clone NameB6Ng01-001C04
Chromosome1 (Build37)
Map Location 173,672,973 - 173,849,302
singlet/doubletdoublet
Overlap geneSlamf1, Cd84, Slamf6
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
Downstream geneVangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C04.bB6Ng01-001C04.g
ACCDH839542DH839543
length1,1721,131
definitionDH839542|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C04, 5' end.DH839543|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,848,118 - 173,849,302)(173,672,973 - 173,674,125)
sequence
gaattctcatctttttctgcatcttttatgcattttccaaaattctgtcc
acattcctaatcctcctagtttgacgtagtctctattcccagctttagcc
ttgtgcctcagtttccacctgcttccaggaaatttcctcttggccattgc
attgataacataaaacaaatagatcagaaaaggagccgaccttcctcctg
tgtcagctcctccatcctaattctatccctatctttgactgtccagccta
cgacgcaacgttaatgttctccctcctctctctttgctttattttttcaa
gattatttgtcctaagccagtgcacattttacctgtttatagtttatctt
ccctgccaagacgttaattccgcagaacagaaattgtgttgacttagttc
ctgaaacgcccacagtgccgtgcattcagtggtcatttagtgaatggttt
atcaaatgacttaatgaaccttgctttctttttctttctgttgtcaattt
gtctagatagctctatatctgcagtatgtcttggtttgtgtgtgtgcatg
cacacaggtgtttgttactgaaagttttagtcaagtgatttgtttttatt
tttattggtttttttcagctacctgatgactaatagaattttcaaaagtt
atttaaattgccatagtctaagttacttgtagctattaatagaataaatt
cacaaacacgttatggacatctaaatgtaatgcatgtttaataattagct
cattttctggaataaaataaatgctaggctacctattggttctttttttt
ttttcttcaatgaattctctcggggctaggtctgtgttagtagccattgc
ttgatctcctgttttagaaacactacgcttcagtccagataggcaccctc
tgagttcttaaagacagtgagagctttccagatagcaggtagaagagcag
gttcagtcaatcccttcctaattgcagtgtgaagtcgttggtgggttttc
agtatctggagcgagagtgagctcgggaagatatgagcccctgaagtcgc
acagtatcacagtagtaattgtagatctttttcccgctaacttatattgt
aaccacaaatacgctggtccggactgttctgacttacaagactcattttc
aatttcagaaaccttcccttcc
gaattctttagtctgagtatctattaaggacttttaacttcagataccta
cttacagaaactcttcatcttcacagctcaaatcagaaaggagtcgagac
aaagatccctggcactgagaaccttctgtcaagagtacaagggaggaaat
gataagacagtttatcttggataaaagaaagcataaaggaagacaggata
tgtagataattatgctaatgggacctgtacattaccatggccagattctg
atgccagaaaaattccacaaaggtcctcacagagccactggctttcaggg
cactatcgggaaccctgggtttacagcagtgatgtctcttatcttccaga
aggaatctatgctggttgtggagagggtcccttacaatagaagcatctct
cagcttctcagatgcaagttccctttggggtctttacagggaagtaccct
tccttacatacaatgaataccagaaaccaaaatgccagttggagcactct
caagtgataactgaaacatttttattcccaagaggtggtactccaatgct
caaggcattccccatccttggtaccaaacctgtaaccagtcttacatcga
aactgcaatctttttccttattagagttatgaggccaataccaagagtga
gccttaattgagcagaagaagtttcttcttagcccaaaccaggagatatc
agaattaaacttgtaagtcaactttgccattactgtcattctttactgaa
atactatatattgtgacagctaaggaaaactccattttgtgccaggcgcc
attctaagttcctaaagtgcaggctcccagtgcctgtgtctccttgcccc
gctcaccaggattgtaaactgaaatgaaatgattaaccacttgctctggc
ttctgaaactctgcttactgccgcatgcagcgggagtgaggacgtagcaa
caaatcccgcaggatgaaataaatgcaagctgcctctagagccctcatcc
tctcagactgggccttttgttcaaatccaccacagacagctgagatagct
gaggctaaaatgcagttcagctacttacatttaacgagtcatgatcttta
atgttttcaactttagcaatttgagctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173848118_173849302
seq2: B6Ng01-001C04.b_45_1216 (reverse)

seq1  GGAAGGGAAGTGTTTTCTGAGATATGGAAAATGAGTCTTTGTAAGTCAGG  50
      |||||||||  | |||||  || || ||||||||||| ||||||||||| 
seq2  GGAAGGGAA--GGTTTCT--GAAATTGAAAATGAGTC-TTGTAAGTCAGA  45

seq1  ACTGTTCGTGACCAGCGTA-TTGTGGTACAAAAATAAGTTTAAGCGGGAA  99
      || || || |||||||||| |||||||   || |||||||  ||||||||
seq2  ACAGTCCG-GACCAGCGTATTTGTGGTTACAATATAAGTT--AGCGGGAA  92

seq1  AAAGATCTACAATTTAACTACTGTGATACTGTGCGACTTCAGGGGGCTTC  149
      ||||||||||||||  |||||||||||||||||||||||||||||   ||
seq2  AAAGATCTACAATT--ACTACTGTGATACTGTGCGACTTCAGGGG--CTC  138

seq1  ATTATCTTTCCCGAGCTTCACTCTTCGCT-CAGATACTGAAAACCCACCA  198
      | |||| ||||||||| |||||| ||||| ||||||||||||||||||||
seq2  A-TATC-TTCCCGAGC-TCACTC-TCGCTCCAGATACTGAAAACCCACCA  184

seq1  ACGCTTTCACACTGCAATTAGGAAGGGATTGACTGAGCCTGCTTCTTCTC  248
      |||  ||||||||||||||||||||||||||||||| ||||| |||||| 
seq2  ACGACTTCACACTGCAATTAGGAAGGGATTGACTGAACCTGC-TCTTCTA  233

seq1  CCTGCTATCTGGAAAGCTCTCACTGTCTTTAAGAACTCAGAGGGTGCCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATCTGGAAAGCTCTCACTGTCTTTAAGAACTCAGAGGGTGCCTA  283

seq1  TCTGGACTGAAGCGTAGTG-TTCTAAAACAGGAGATCAAGCAATGGCTAC  347
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTGGACTGAAGCGTAGTGTTTCTAAAACAGGAGATCAAGCAATGGCTAC  333

seq1  TAACACAGACCTAGCCCCGAGAGAATTCATTGAAG-AAAAAAAAAAAGAA  396
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAACACAGACCTAGCCCCGAGAGAATTCATTGAAGAAAAAAAAAAAAGAA  383

seq1  CCAATAGGTAGCCTAGCATTTATTTTATTCCAGAAAATGAGCTAATTATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGGTAGCCTAGCATTTATTTTATTCCAGAAAATGAGCTAATTATT  433

seq1  AAACATGCATTACATTTAGATGTCCATAACGTGTTTGTGAATTTATTCTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCATTACATTTAGATGTCCATAACGTGTTTGTGAATTTATTCTA  483

seq1  TTAATAGCTACAAGTAACTTAGACTATGGCAATTTAAATAACTTTTGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGCTACAAGTAACTTAGACTATGGCAATTTAAATAACTTTTGAAA  533

seq1  ATTCTATTAGTCATCAGGTAGCTGAAAAAAACCAATAAAAATAAAAACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTAGTCATCAGGTAGCTGAAAAAAACCAATAAAAATAAAAACAA  583

seq1  ATCACTTGACTAAAACTTTCAGTAACAAACACCTGTGTGCATGCACACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGACTAAAACTTTCAGTAACAAACACCTGTGTGCATGCACACAC  633

seq1  ACAAACCAAGACATACTGCAGATATAGAGCTATCTAGACAAATTGACAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAGACATACTGCAGATATAGAGCTATCTAGACAAATTGACAAC  683

seq1  AGAAAGAAAAAGAAAGCAAGGTTCATTAAGTCATTTGATAAACCATTCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAAGAAAGCAAGGTTCATTAAGTCATTTGATAAACCATTCAC  733

seq1  TAAATGACCACTGAATGCACGGCACTGTGGGCGTTTCAGGAACTAAGTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACCACTGAATGCACGGCACTGTGGGCGTTTCAGGAACTAAGTCA  783

seq1  ACACAATTTCTGTTCTGCGGAATTAACGTCTTGGCAGGGAAGATAAACTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTCTGTTCTGCGGAATTAACGTCTTGGCAGGGAAGATAAACTA  833

seq1  TAAACAGGTAAAATGTGCACTGGCTTAGGACAAATAATCTTGAAAAAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGTAAAATGTGCACTGGCTTAGGACAAATAATCTTGAAAAAATA  883

seq1  AAGCAAAGAGAGAGGAGGGAGAACATTAACGTTGCGTCGTAGGCTGGACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGAGAGAGGAGGGAGAACATTAACGTTGCGTCGTAGGCTGGACA  933

seq1  GTCAAAGATAGGGATAGAATTAGGATGGAGGAGCTGACACAGGAGGAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGATAGGGATAGAATTAGGATGGAGGAGCTGACACAGGAGGAAGG  983

seq1  TCGGCTCCTTTTCTGATCTATTTGTTTTATGTTATCAATGCAATGGCCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCCTTTTCTGATCTATTTGTTTTATGTTATCAATGCAATGGCCAA  1033

seq1  GAGGAAATTTCCTGGAAGCAGGTGGAAACTGAGGCACAAGGCTAAAGCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATTTCCTGGAAGCAGGTGGAAACTGAGGCACAAGGCTAAAGCTG  1083

seq1  GGAATAGAGACTACGTCAAACTAGGAGGATTAGGAATGTGGACAGAATTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAGACTACGTCAAACTAGGAGGATTAGGAATGTGGACAGAATTT  1133

seq1  TGGAAAATGCATAAAAGATGCAGAAAAAGATGAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGCATAAAAGATGCAGAAAAAGATGAGAATTC  1172

seq1: chr1_173672973_173674125
seq2: B6Ng01-001C04.g_67_1197

seq1  GAATTCTTTAGTCTGAGTATCTATTAAGGACTTTTAACTTCAGATACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTCTGAGTATCTATTAAGGACTTTTAACTTCAGATACCTA  50

seq1  CTTACAGAAACTCTTCATCTTCACAGCTCAAATCAGAAAGGAGTCGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAAACTCTTCATCTTCACAGCTCAAATCAGAAAGGAGTCGAGAC  100

seq1  AAAGATCCCTGGCACTGAGAACCTTCTGTCAAGAGTACAAGGGAGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCCTGGCACTGAGAACCTTCTGTCAAGAGTACAAGGGAGGAAAT  150

seq1  GATAAGACAGTTTATCTTGGATAAAAGAAAGCATAAAGGAAGACAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGACAGTTTATCTTGGATAAAAGAAAGCATAAAGGAAGACAGGATA  200

seq1  TGTAGATAATTATGCTAATGGGACCTGTACATTACCATGGCCAGATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATAATTATGCTAATGGGACCTGTACATTACCATGGCCAGATTCTG  250

seq1  ATGCCAGAAAAATTCCACAAAGGTCCTCACAGAGCCACTGGCTTTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGAAAAATTCCACAAAGGTCCTCACAGAGCCACTGGCTTTCAGGG  300

seq1  CACTATCGGGAACCCTGGGTTTACAGCAGTGATGTCTCTTATCTTCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCGGGAACCCTGGGTTTACAGCAGTGATGTCTCTTATCTTCCAGA  350

seq1  AGGAATCTATGCTGGTTGTGGAGAGGGTCCCTTACAATAGAAGCATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTATGCTGGTTGTGGAGAGGGTCCCTTACAATAGAAGCATCTCT  400

seq1  CAGCTTCTCAGATGCAAGTTCCCTTTGGGGTCTTTACAGGGAAGTACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTCAGATGCAAGTTCCCTTTGGGGTCTTTACAGGGAAGTACCCT  450

seq1  TCCTTACATACAATGAATACCAGAAACCAAAATGCCAGTTGGAGCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACATACAATGAATACCAGAAACCAAAATGCCAGTTGGAGCACTCT  500

seq1  CAAGTGATAACTGAAACATTTTTATTCCCAAGAGGTGGTACTCCAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATAACTGAAACATTTTTATTCCCAAGAGGTGGTACTCCAATGCT  550

seq1  CAAGGCATTCCCCATCCTTGGTACCAAACCTGTAACCAGTCTTACATCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATTCCCCATCCTTGGTACCAAACCTGTAACCAGTCTTACATCGA  600

seq1  AACTGCAATCTTTTTCCTTATTAGAGTTATGAGGCCAATACCAAGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATCTTTTTCCTTATTAGAGTTATGAGGCCAATACCAAGAGTGA  650

seq1  GCCTTAATTGAGCAGAAGAAGTTTCTTCTTAGCCCAAACCAGGAGATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATTGAGCAGAAGAAGTTTCTTCTTAGCCCAAACCAGGAGATATC  700

seq1  AGAATTAAACTTGTAAGTCAACTTTGCCATTACTGTCATTCTTTACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAACTTGTAAGTCAACTTTGCCATTACTGTCATTCTTTACTGAA  750

seq1  ATACTATATATTGTGACAGCTAAGGAAAACTCCATTTTGTGCCAGGCGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATATATTGTGACAGCTAAGGAAAACTCCATTTTGTGCCAGGCGCC  800

seq1  ATTCTAAGTTCCTAAAGTGCAGGCTCCCAGTGCCTGTGTCTCCTTGCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGTTCCTAAAGTGCAGGCTCCCAGTGCCTGTGTCTCCTTGCCCC  850

seq1  GCTCACCAGGATTGTAAAACTGAAATGAAATGATTAACCACTTGCTCTGG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTCACCAGGATTGT-AAACTGAAATGAAATGATTAACCACTTGCTCTGG  899

seq1  CTTCTGAAAACTCTGCTTACTGCCGCATGCAGCGGGAGTGAGGACGTAGC  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTG-AAACTCTGCTTACTGCCGCATGCAGCGGGAGTGAGGACGTAGC  948

seq1  AACAAATCCCGCAGGGATGAAATAAATGCAAGCTGCCTCTAAGAGCCCTC  1000
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AACAAATCCCGCA-GGATGAAATAAATGCAAGCTGCCTCT-AGAGCCCTC  996

seq1  ATCCTCTCAGAACTGGGCCTCTGTTCCAAATCCAACCACAAGAACAGCTG  1050
      |||||||||| ||||||||| |  | ||||||| ||||||   |||||||
seq2  ATCCTCTCAG-ACTGGGCCTTTTGTTCAAATCC-ACCACA--GACAGCTG  1042

seq1  AAGGATAGCTGAAGCCTAAAAATGCAAGTTCAGCTACTTACAATTTAAAC  1100
      |  ||||||||| ||   ||||||| ||||||||||||||| |||||   
seq2  A--GATAGCTGAGGC--TAAAATGC-AGTTCAGCTACTTAC-ATTTA---  1083

seq1  AGAAGTCTATGATCTTTTAGTGTTTTCAAAATTTATAGCATTTTGAGCTG  1150
      |  |||| |||||| |||| |||||||||    | ||||| |||||||||
seq2  ACGAGTC-ATGATC-TTTAATGTTTTCAA---CTTTAGCAATTTGAGCTG  1128

seq1  AAA  1153
      |||
seq2  AAA  1131