BAC Information

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BAC

Clone NameB6Ng01-001C20
Chromosome1 (Build37)
Map Location 143,242,583 - 143,243,469
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C20.bB6Ng01-001C20.g
ACCDH839572DH839573
length8531,177
definitionDH839572|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C20, 5' end.DH839573|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcaggttgtatttttattgtttctatttccattttcagttct
ttccagctttatttgacgccttcaccttttggtttgtattttctttcttt
ctttcttccttccttccttccttccttccttccttccttccttccttcct
ttctctctctctctctctctctctctctctctctctctctttctttcttt
ctttctttctttcattgtttttgtttgtttgtttatttgtttttgttttt
gtttttcgagacagggtttctctgtgtagccctggctgacctggaactca
ctttgtagaacaggctggcctcgaactcagaaatcctcctgcctctgcct
cctgagtgctgagattaaaggcctgtgccaccataccctgctggtttgta
ttttctttacttatctaaatgaatttattcatttcctccaagtatttgtt
tctttaatggaattattcattcagtatttttaaggtctttttcttctgct
taatctatgtttgtatatgtgatggtttgtatatgcccagccgagggaga
ggcattattagagtacttgtggctgtgtggagtaggtagtgtgtcactgt
ggtgtggctctagacacatctagctgctgaagtcaattctgctagcagtc
tcaatgaagacatagaatctcagctctcctgaacacatctgtctggatgc
tgccattaccacctgtgataatgactgaacctctgatctgtaattggttc
cttaattaatgttgtccatagagttccctggtcatgtgttctggacagca
taatctcaagacagaagtcggtaccaggactggaatcgctgtgatagtct
gaa
gaattctcacctgaggaataacgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaactctcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacgtagtactaccagaggatccagcaatacctctgctgggc
atatatctagaagatgtcccaactggtaagaagggcacatgctccactat
gttgataacagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacagaatcacaaa
ggtactcacacaatatgtactcactgataattggatattagcccaaaact
taggatacccaagatataagatacaatttgctaaatgcttgaaactcaag
aagaatgaaggccaaagtggggacactgtgccccttctgagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggaactgtgacga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggtccagatatagctgtctcttgtgagagtaggccggggcctaacaaaca
cagaagtggatgctcacagtcagctatttgatggatcacagggctcccaa
tggagagctagagaaagtaccccagagctaaagggatctgcaaccctata
ggtggaacattatgaactaaccagtaccccggagctcttgactatagctg
catatgtaataaaagatggctagtcggcatccctgcaagagaggcccttg
gaaacacaaactttatagtcccagtaagggattgccagggtcaaaaagta
gaatggttgggtgagagaaagtagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143242583_143243469
seq2: B6Ng01-001C20.b_45_897 (reverse)

seq1  TTCAGGCCTATCACAGCAATACCCCAGTCCCTGGTACCGACTTCTGTCTT  50
      |||| | |||||||||| ||   ||||| |||||||||||||||||||||
seq2  TTCA-GACTATCACAGCGAT--TCCAGT-CCTGGTACCGACTTCTGTCTT  46

seq1  AGAGTTTTATTGCTGTCCAGACACCATGACCAAGGGAACTCTTAAAAGGA  100
       ||| ||   |||||||||||   ||||||| ||||||||||   | |||
seq2  -GAGATT--ATGCTGTCCAGAACACATGACC-AGGGAACTCT---ATGGA  89

seq1  CAACATTTAATTAGGACCAAATTACAGATTCAGAGGTTCAGTCCATTATC  150
      ||||||| | | |||| | ||||||||| ||||||||||||| |||||||
seq2  CAACATTAATTAAGGAACCAATTACAGA-TCAGAGGTTCAGT-CATTATC  137

seq1  ACCAAGGTGGGAAAATGGCAGCATCCAGACAGGTGTGGTTCAGGAGAAGC  200
      ||  ||||||   ||||||||||||||||||| ||| ||||||||| |||
seq2  AC--AGGTGG--TAATGGCAGCATCCAGACAGATGT-GTTCAGGAG-AGC  181

seq1  TGAGAATTCTATGTCTTCATTTGAAGGCTGCTAGCAGAATTTTGACTTTC  250
      |||| ||||||||||||||||   || ||||||||||||  ||||| |||
seq2  TGAG-ATTCTATGTCTTCATT--GAGACTGCTAGCAGAA--TTGAC-TTC  225

seq1  AGGCAGCTAGGATGTGGTCTTAGAGCCCACACCCACAGTGACACACCTAC  300
      | ||||||| ||||| ||| ||||| ||||| ||||||||||||| ||| 
seq2  A-GCAGCTA-GATGT-GTC-TAGAG-CCACA-CCACAGTGACACA-CTA-  267

seq1  CCTACTCCAACACAGCCACAAGTACTCTAATAATGCCTCTCCCTCGGCTG  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCC-ACACAGCCACAAGTACTCTAATAATGCCTCTCCCTCGGCTG  316

seq1  GGCATATACAAACCATCACATATACAAACATAGATTAAGCAGAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATACAAACCATCACATATACAAACATAGATTAAGCAGAAGAAAAA  366

seq1  GACCTTAAAAATACTGAATGAATAATTCCATTAAAGAAACAAATACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAAAAATACTGAATGAATAATTCCATTAAAGAAACAAATACTTGG  416

seq1  AGGAAATGAATAAATTCATTTAGATAAGTAAAGAAAATACAAACCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGAATAAATTCATTTAGATAAGTAAAGAAAATACAAACCAGCAG  466

seq1  GGTATGGTGGCACAGGCCTTTAATCTCAGCACTCAGGAGGCAGAGGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTGGCACAGGCCTTTAATCTCAGCACTCAGGAGGCAGAGGCAGG  516

seq1  AGGATTTCTGAGTTCGAGGCCAGCCTGTTCTACAAAGTGAGTTCCAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTGAGTTCGAGGCCAGCCTGTTCTACAAAGTGAGTTCCAGGTC  566

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAAACA  616

seq1  AATAAACAAACAAACAAAAACAATGAAAGAAAGAAAGAAAGAAAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACAAACAAAAACAATGAAAGAAAGAAAGAAAGAAAGAAAGA  666

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGAAGGAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGAAGGAAGGAA  716

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAAT  766

seq1  ACAAACCAAAAGGTGAAGGCGTCAAATAAAGCTGGAAAGAACTGAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAAAGGTGAAGGCGTCAAATAAAGCTGGAAAGAACTGAAAATG  816

seq1  GAAATAGAAACAATAAAAATACAACCTGAAAGAATTC  887
      |||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAACAATAAAAATACAACCTGAAAGAATTC  853