BAC Information

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BAC

Clone NameB6Ng01-001F05
Chromosome1 (Build37)
Map Location 96,195,524 - 96,196,670
singlet/doubletsinglet
Overlap genenone
Upstream geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
Downstream geneLOC666025, LOC100040685, LOC383603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F05.bB6Ng01-001F05.g
ACCDH839682DH839683
length1,2041,129
definitionDH839682|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F05, 5' end.DH839683|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttggggtgaatttgcttcctttttttctagg
gcttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttctt
cttggaggcactcagagctatgagtttcctcttagaatgcttcattgtgt
cccatagtttgggtacgttgtggcttcattttcattaactctaaagtctt
taatttcttttcttaatccttcttgacaaggtatcatggagaagagggat
attcagttcacgtgaatgtgcttcattattatgttgttattgaagattag
cctaggcatgttgtctggaatggaaccatgggacatttcataattggatc
atgt
gaattcaataggggaaatgaaggcagaaattgaatgaggaggattatact
ggctggttttgggtgtcaacttgacacaggctgaagttatcacagagaaa
ggagcttcagttggggaaatgcctctatgagatccagctgtaaggcattt
tcaattagtgatcaagggggaaaggccccttgtgggtggtaccatctctg
ggctggaagtcttgggttctatgagagtgcaggctgagcaagccgggtga
ggcaagccaataatgaacatccttccatggcctctgcatcagctcctgct
ccctgacgtgacctgcttgagttccagtcctgacttccttcaatatggaa
atgtaagctgaataaaccctttcctccccaacttgcttcttgatcatgat
gttttgtccagaaatagaaatcctgactaagacaaggataaaatccatcc
tccatctataccattgccttgctagtatttcttacatgaaaatagatctt
ggagagataacacaaaatttttccttggaagaacaagagcccatgttcct
tctccagaatccatgttaaagaaacagtttttctaggaaagagctgctca
ctggtcagccctaaacatatatacatttaaggaacactggagagactata
ggttgtgcatgtgaagagataaacaatataatgtaaaaataaaagagtaa
taattgaagaagttatgaatttaagaggaagtaggaagtggacatggaac
aaagtggttgctaaagagggatggatggatggaaatgttgcacataaagt
aacttatactgaagttcttgaaaaagaaaaagggaaagcagttggatact
gtggcccatgcttgaaatctcagcaccgaggagaaagtaagctgaatccc
tgaggcttgttgggccaatcatccagcttgcttgggaaattctagaccag
agagagaccctgtcttaagatgaaaagacgcacatacttagatcaccaaa
actgtcatctacttcacttatccaggcaacgctcaagtgacatgccacac
atgtataactcaatgctcacaccaatatactgcctttccacacaccatgc
cacacattaacacatgccacacaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_96195524_96196670
seq2: B6Ng01-001F05.g_65_1193 (reverse)

seq1  TTTATTGTGTGT-GCATGTGTGTTAAATGTGTGTGCATGTTTGTGTG-GG  48
      |||||| ||||| |||||||   | |||||||| |||||   ||||| ||
seq2  TTTATT-TGTGTGGCATGTG---TTAATGTGTG-GCATG---GTGTGTGG  42

seq1  AAAGGCAAGTATATGTGTGTGAGCATATGAGTTATACATGTGT-GCATGT  97
      |||||| |||||||  |||||||||| |||||||||||||||| ||||| 
seq2  AAAGGC-AGTATATTGGTGTGAGCAT-TGAGTTATACATGTGTGGCATG-  89

seq1  TCACTTGGAAGGCGTTTGCCTGGATAAGTGGAAGTAAGATGACAGTTTTT  147
      |||||||    ||| |||||||||||||| ||||| ||||||||| ||||
seq2  TCACTTG---AGCG-TTGCCTGGATAAGT-GAAGT-AGATGACAG-TTTT  132

seq1  GGTGATTCTTAAGTATTGTGCGTCTTTTCATCTTTAAGACAGGGTCTCTC  197
      ||||||   |||||| |||||||||||||||| |||||||||||||||||
seq2  GGTGAT--CTAAGTA-TGTGCGTCTTTTCATC-TTAAGACAGGGTCTCTC  178

seq1  TCTGGTCTAGAATTTTCCAAGCAAGCTGGATGATTGG-CCAACAAGCCTC  246
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TCTGGTCTAGAATTTCCCAAGCAAGCTGGATGATTGGCCCAACAAGCCTC  228

seq1  AGGGATTCAGCTTACTTTCTCCTCGGTGCTGAGATTTCAAGCATGGGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCAGCTTACTTTCTCCTCGGTGCTGAGATTTCAAGCATGGGCCA  278

seq1  CAGTATCCAACTGCTTTCCCTTTTTCTTTTTCAAGAACTTCAGTATAAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCAACTGCTTTCCCTTTTTCTTTTTCAAGAACTTCAGTATAAGT  328

seq1  TACTTTATGTGCAACATTTCCATCCATCCATCCCTCTTTAGCAACCACTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATGTGCAACATTTCCATCCATCCATCCCTCTTTAGCAACCACTT  378

seq1  TGTTCCATGTCCACTTCCTACTTCCTCTTAAATTCATAACTTCTTCAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATGTCCACTTCCTACTTCCTCTTAAATTCATAACTTCTTCAATT  428

seq1  ATTACTCTTTTATTTTTACATTATATTGTTTATCTCTTCACATGCACAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTTTATTTTTACATTATATTGTTTATCTCTTCACATGCACAAC  478

seq1  CTATAGTCTCTCCAGTGTTCCTTAAATGTATATATGTTTAGGGCTGACCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCTCTCCAGTGTTCCTTAAATGTATATATGTTTAGGGCTGACCA  528

seq1  GTGAGCAGCTCTTTCCTAGAAAAACTGTTTCTTTAACATGGATTCTGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGCTCTTTCCTAGAAAAACTGTTTCTTTAACATGGATTCTGGAG  578

seq1  AAGGAACATGGGCTCTTGTTCTTCCAAGGAAAAATTTTGTGTTATCTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACATGGGCTCTTGTTCTTCCAAGGAAAAATTTTGTGTTATCTCTC  628

seq1  CAAGATCTATTTTCATGTAAGAAATACTAGCAAGGCAATGGTATAGATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTATTTTCATGTAAGAAATACTAGCAAGGCAATGGTATAGATGG  678

seq1  AGGATGGATTTTATCCTTGTCTTAGTCAGGATTTCTATTTCTGGACAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGATTTTATCCTTGTCTTAGTCAGGATTTCTATTTCTGGACAAAA  728

seq1  CATCATGATCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGATCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACA  778

seq1  TTTCCATATTGAAGGAAGTCAGGACTGGAACTCAAGCAGGTCACGTCAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATTGAAGGAAGTCAGGACTGGAACTCAAGCAGGTCACGTCAGG  828

seq1  GAGCAGGAGCTGATGCAGAGGCCATGGAAGGATGTTCATTATTGGCTTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAGCTGATGCAGAGGCCATGGAAGGATGTTCATTATTGGCTTGC  878

seq1  CTCACCCGGCTTGCTCAGCCTGCACTCTCATAGAACCCAAGACTTCCAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCGGCTTGCTCAGCCTGCACTCTCATAGAACCCAAGACTTCCAGC  928

seq1  CCAGAGATGGTACCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGGTACCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTG  978

seq1  AAAATGCCTTACAGCTGGATCTCATAGAGGCATTTCCCCAACTGAAGCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCTTACAGCTGGATCTCATAGAGGCATTTCCCCAACTGAAGCTC  1028

seq1  CTTTCTCTGTGATAACTTCAGCCTGTGTCAAGTTGACACCCAAAACCAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGTGATAACTTCAGCCTGTGTCAAGTTGACACCCAAAACCAGC  1078

seq1  CAGTATAATCCTCCTCATTCAATTTCTGCCTTCATTTCCCCTATTGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAATCCTCCTCATTCAATTTCTGCCTTCATTTCCCCTATTGAATT  1128

seq1  C  1147
      |
seq2  C  1129