BAC Information

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BAC

Clone NameB6Ng01-001F24
Chromosome1 (Build37)
Map Location 131,888,131 - 131,979,479
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F24.bB6Ng01-001F24.g
ACCDH839717DH839718
length1,0741,086
definitionDH839717|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F24, 5' end.DH839718|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,888,131 - 131,889,201)(131,978,379 - 131,979,479)
sequence
gaattcagaagtgaatataatttggctttacctctcaagacacatccata
acatctgtgtccctttgaatcctaactcctgtctatttactcattcattt
agtagaaggacttgtggaaatgccaatacagggcaactaaatctaaccaa
tgaagttaggggagatttcatgaaagtaacaaatgagctgagcttgtagg
gctctaataaatagaaaatggtcaaaaggactctgattcagaagacaaaa
tagagaccagaagccatggggaagtgtcagcaacagtggctgcagactct
ggagtaattttacagaatttgcaggacatactgatggattagaacttgag
gcaaagtgtgctaagaaagaatcatttctcaaacttgggtggctttgagg
ataaagccattagtggacagagaggacctcaatgattggacagggtcatg
agcttagttgtaggcatgcttagttaagactttccttaaggtgtttggtt
tacattctcaataaatagttgagtatttagatttgaagcacaacaaaatg
cccaatattggacagattgagatggaactgaaaaagtatagcatttcaac
tgacaaagctttaaaataacttgttttatacactatatatagtgaagtaa
atgtcatttactagttatgatattctaacttgtgcatagctatttgtata
tgcaaatatatatgtacatatatgtacatatatataaacattcattatat
aacagattgtacatgtattatttatatagaagattatatgggttatctac
agtaaaaagcatatttagttttaggctattaatatagacggaaatcttta
agactgggcttaaatgaactttatccattgcttttaaaatacagagcttt
caatgagtgattttcatattagaggtaaaactgctggtgactcagaaaat
gtcacttcagcattcccatctttctttgtgtgtaaccactggtcattttc
tgtgtctgcctcagaatcctgaataatgactcggaggcttatcttattta
tgaatgaatgctgaagcctcaagc
gaattcttaaacactggagctatcctgatagtgtatctagaattcttaag
acatttgaaagtacagagcagatttcatagcaggaagctttcggagactg
gtacactgtgtgggttgtgaaagctcagagcactgttttctccctattac
aaataaggcaagcatggcaaattcaagcagatagaagtcatttgggggct
ttcagaaacagccactctgctgcaataaaggaactcatttgatagtaatg
tttaaaaaaaaaatcagtcctctatgggatgatttttcccccttctatgt
gtgaatgatgttttgatcaggatttacaaagagagagagagagaacaaaa
tgctgacttgtgaagaaaaatcatcaaagtttctttcactaaatgacaac
agtaaagatgagaagagacagcaacaccaacctgagcctttgtaggatcc
gtgttagcagtgcatgacggacaaaagggaaagaaaattatagacgcatt
agttgagctgctattacaacacagaattgaaaaaaaaaaaaagaaaaaga
aaaacaaacctaaaaagtcctttcccctgatcattgattattgatggcta
cacttgatttgtaatttgaatgcttcgctctcagtccgtaagcaaagcat
ccaatgtgtgacttgggacacagagttgattgatgttctcagcctcattc
ttaagatcgaggcccaggaattaacatgaaacttggaagcttaactcaga
ctccttaaggacaggagtgtgttgtcacagttaatcattagcacactgca
caggaatggctattttgcatgtttgcacaccacactgagcagactgaatt
agaagacagatcccccacacttgttcaaactagtctttccgatttctttt
tttcatcaagcttaaatttgagtttatgtcatacctaagctggactgcgt
gttccatgagaacatgatcagagtatcctgatttatgggtgtatagtctt
acttcgtactcatatttgctctacagccctcattctccactgtggagaga
tgatgattcgtgaaatagatctcagaaataaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131888131_131889201
seq2: B6Ng01-001F24.b_44_1117

seq1  GAATTCAGAAGTGAATATAATTTGGCTTTACCTCTCAAGACACATCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTGAATATAATTTGGCTTTACCTCTCAAGACACATCCATA  50

seq1  ACATCTGTGTCCCTTTGAATCCTAACTCCTGTCTATTTACTCATTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTGTCCCTTTGAATCCTAACTCCTGTCTATTTACTCATTCATTT  100

seq1  AGTAGAAGGACTTGTGGAAATGCCAATACAGGGCAACTAAATCTAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGGACTTGTGGAAATGCCAATACAGGGCAACTAAATCTAACCAA  150

seq1  TGAAGTTAGGGGAGATTTCATGAAAGTAACAAATGAGCTGAGCTTGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTAGGGGAGATTTCATGAAAGTAACAAATGAGCTGAGCTTGTAGG  200

seq1  GCTCTAATAAATAGAAAATGGTCAAAAGGACTCTGATTCAGAAGACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATAAATAGAAAATGGTCAAAAGGACTCTGATTCAGAAGACAAAA  250

seq1  TAGAGACCAGAAGCCATGGGGAAGTGTCAGCAACAGTGGCTGCAGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCAGAAGCCATGGGGAAGTGTCAGCAACAGTGGCTGCAGACTCT  300

seq1  GGAGTAATTTTACAGAATTTGCAGGACATACTGATGGATTAGAACTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTTTACAGAATTTGCAGGACATACTGATGGATTAGAACTTGAG  350

seq1  GCAAAGTGTGCTAAGAAAGAATCATTTCTCAAACTTGGGTGGCTTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGTGCTAAGAAAGAATCATTTCTCAAACTTGGGTGGCTTTGAGG  400

seq1  ATAAAGCCATTAGTGGACAGAGAGGACCTCAATGATTGGACAGGGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCATTAGTGGACAGAGAGGACCTCAATGATTGGACAGGGTCATG  450

seq1  AGCTTAGTTGTAGGCATGCTTAGTTAAGACTTTCCTTAAGGTGTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTTGTAGGCATGCTTAGTTAAGACTTTCCTTAAGGTGTTTGGTT  500

seq1  TACATTCTCAATAAATAGTTGAGTATTTAGATTTGAAGCACAACAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTCAATAAATAGTTGAGTATTTAGATTTGAAGCACAACAAAATG  550

seq1  CCCAATATTGGACAGATTGAGATGGAACTGAAAAAGTATAGCATTTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATTGGACAGATTGAGATGGAACTGAAAAAGTATAGCATTTCAAC  600

seq1  TGACAAAGCTTTAAAATAACTTGTTTTATACACTATATATAGTGAAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGCTTTAAAATAACTTGTTTTATACACTATATATAGTGAAGTAA  650

seq1  ATGTCATTTACTAGTTATGATATTCTAACTTGTGCATAGCTATTTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTTACTAGTTATGATATTCTAACTTGTGCATAGCTATTTGTATA  700

seq1  TGCAAATATATATGTACATATATGTACATATATATAAACATTCATTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATATATATGTACATATATGTACATATATATAAACATTCATTATAT  750

seq1  AACAGATTGTACATGTATTATTTATATAGAAGATTATATGGGTTATCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTGTACATGTATTATTTATATAGAAGATTATATGGGTTATCTAC  800

seq1  AGTAAAAAGCATATTTAGTTTTAGGCTATTAATATAGAAGGAAATCTTTA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTAAAAAGCATATTTAGTTTTAGGCTATTAATATAGACGGAAATCTTTA  850

seq1  AGACTGGGCTTAAATGTAACTTTATCCATTGCTTTTAAAATACAGAGCTT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGACTGGGCTTAAATG-AACTTTATCCATTGCTTTTAAAATACAGAGCTT  899

seq1  TCAATGAGTGATTTTCATATTAGAGGTAAAATTGCTGGTGACTCAGAAAA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAATGAGTGATTTTCATATTAGAGGTAAAACTGCTGGTGACTCAGAAAA  949

seq1  TGTCACTTCAGCATTCCCATCTTTCTTTGTGTGTAACCACTGGTC-TTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCACTTCAGCATTCCCATCTTTCTTTGTGTGTAACCACTGGTCATTTT  999

seq1  CTGTGTCTGCCCCAG-ATCCTGAATAATGACCCGGAGGCTTAT-TTATTT  1047
      ||||||||||| ||| ||||||||||||||| ||||||||||| ||||||
seq2  CTGTGTCTGCCTCAGAATCCTGAATAATGACTCGGAGGCTTATCTTATTT  1049

seq1  ATGAATTAATGCT-AAGCCTTAAGC  1071
      |||||| |||||| |||||| ||||
seq2  ATGAATGAATGCTGAAGCCTCAAGC  1074

seq1: chr1_131978379_131979479
seq2: B6Ng01-001F24.g_65_1150 (reverse)

seq1  ACAATTTATTTTCTTGAGA-CTATGTTCACGAATTCATTCATCTCTCTGC  49
      |||||||||||   ||||| |||| |||||||| ||| |||||||||  |
seq2  ACAATTTATTT--CTGAGATCTAT-TTCACGAA-TCA-TCATCTCTC--C  43

seq1  CAATTTGAGAATATGGGCTGTAGAGCAAATATGAGTTAAGTATTAAGACT  99
        | | ||||||  ||||||||||||||||||||| || | | |||||||
seq2  ACAGTGGAGAATGAGGGCTGTAGAGCAAATATGAG-TACGAAGTAAGACT  92

seq1  ATAACACCATAAATAAGGATACTTCTGAACATGTTCTCATGGAACATGCA  149
      |||   |||||||| ||||||| ||||| ||||||||||||||||| |||
seq2  ATACACCCATAAATCAGGATAC-TCTGATCATGTTCTCATGGAACACGCA  141

seq1  GTCCAGCCTTAGGTATGACATAAATTCAAATTTTAAGCTTTGATTAAAAA  199
      |||||| ||||||||||||||||| ||||| ||||||| |||| | ||||
seq2  GTCCAG-CTTAGGTATGACATAAACTCAAA-TTTAAGC-TTGA-TGAAAA  187

seq1  AAAGAAATAGGGAAGACTAGTTTGAACAAGTGTGGTGGGATCTGTCTTCT  249
      |||||||| || ||||||||||||||||||||||| ||||||||||||||
seq2  AAAGAAATCGGAAAGACTAGTTTGAACAAGTGTGG-GGGATCTGTCTTCT  236

seq1  AATTCAGTCTGCTCAGTGTGGTGTGCAAACATGCAAAAATAGCCATTCCT  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTCAGTCTGCTCAGTGTGGTGTGCAAACATGC-AAAATAGCCATTCCT  285

seq1  GTGCAGTGTGCTAATTGATTAACTGTGACAACACACTCCTGTCCTTAAGG  349
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGTGCTAA-TGATTAACTGTGACAACACACTCCTGTCCTTAAGG  334

seq1  AGTCTGAGTTAAGCTTCCAAGTTTCATGTTAATTCCTGGGCCTCGATCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGTTAAGCTTCCAAGTTTCATGTTAATTCCTGGGCCTCGATCTT  384

seq1  AAGAATGAGGCTGAGAACATCAATCAACTCTGTGTCCCAAGTCACACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAGGCTGAGAACATCAATCAACTCTGTGTCCCAAGTCACACATT  434

seq1  GGATGCTTTGCTTACGGACTGAGAGCGAAGCATTCAAATTACAAATCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTTGCTTACGGACTGAGAGCGAAGCATTCAAATTACAAATCAAG  484

seq1  TGTAGCCATCAATAATCAATGATCAGGGGAAAGGACTTTTTAGGTTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCATCAATAATCAATGATCAGGGGAAAGGACTTTTTAGGTTTGTT  534

seq1  TTTCTTTTTCTTTTTTTTTTTTTCAATTCTGTGTTGTAATAGCAGCTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCTTTTTTTTTTTTTCAATTCTGTGTTGTAATAGCAGCTCAA  584

seq1  CTAATGCGTCTATAATTTTCTTTCCCTTTTGTCCGTCATGCACTGCTAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCGTCTATAATTTTCTTTCCCTTTTGTCCGTCATGCACTGCTAAC  634

seq1  ACGGATCCTACAAAGGCTCAGGTTGGTGTTGCTGTCTCTTCTCATCTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATCCTACAAAGGCTCAGGTTGGTGTTGCTGTCTCTTCTCATCTTTA  684

seq1  CTGTTGTCATTTAGTGAAAGAAACTTTGATGATTTTTCTTCACAAGTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCATTTAGTGAAAGAAACTTTGATGATTTTTCTTCACAAGTCAG  734

seq1  CATTTTGTTCTCTCTCTCTCTCTTTGTAAATCCTGATCAAAACATCATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTCTCTCTCTCTCTCTTTGTAAATCCTGATCAAAACATCATTC  784

seq1  ATACATAGAAGGGGGAAAAATCATCCCATAGAGGACTGATTTTTTTTTTA  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGAAGGGGGAAAAATCATCCCATAGAGGACTGATTTTTTTTTTA  834

seq1  AACATTACTATCAAATGAGTTCCTTTATTGCAGCAGAGTGGCTGTTTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTATCAAATGAGTTCCTTTATTGCAGCAGAGTGGCTGTTTCTG  884

seq1  AAAGCCCCCAAATGACTTCTATCTGCTTGAATTTGCCATGCTTGCCTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCCAAATGACTTCTATCTGCTTGAATTTGCCATGCTTGCCTTAT  934

seq1  TTGTAATAGGGAGAAAACAGTGCTCTGAGCTTTCACAACCCACACAGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAGGGAGAAAACAGTGCTCTGAGCTTTCACAACCCACACAGTGT  984

seq1  ACCAGTCTCCGAAAGCTTCCTGCTATGAAATCTGCTCTGTACTTTCAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTCCGAAAGCTTCCTGCTATGAAATCTGCTCTGTACTTTCAAAT  1034

seq1  GTCTTAAGAATTCTAGATACACTATCAGGATAGCTCCAGTGTTTAAGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGAATTCTAGATACACTATCAGGATAGCTCCAGTGTTTAAGAAT  1084

seq1  TC  1101
      ||
seq2  TC  1086