BAC Information

Click to search

BAC

Clone NameB6Ng01-001J17
Chromosome1 (Build37)17 (Build37)
Map Location 173,083,313 - 173,083,37681,717,144 - 81,717,676
singlet/doubletsingletsinglet
Overlap geneMpz
Upstream geneUap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc
Downstream genePcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001J17.bB6Ng01-001J17.g
ACCDH839881DH839882
length284530
definitionDH839881|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J17, 5' end.DH839882|Mus musculus domesticus DNA, BAC clone: B6Ng01-001J17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(173,083,313 - 173,083,376)(81,717,144 - 81,717,676)
sequence
actatctcagctaggctggtcggcaagaaagctcccatgatctgcctgtg
tgccacttccaggatctgagttacaggtatgtgctactatgcctgcccct
tttatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtc
tgtctatctgtctatctatctatctatctatctatctatctatctatcta
tctatctatctatctatctatctgtctatctatcatgtatgtatgtatgt
atatatgtacctgtctatctatcatctatctatc
cagtgcaagaagacattctgtatataacaacaactatctgtagtatccta
aataactaagtgtgtattatcagaatcataaaagtgaaaactaaataaaa
ttcaaagtataaaaaatccaaaatgaaccatgagaaatacaacttatagg
agctgatactggactctgaatcccttggcgtgtcaagggccatgttaccc
agcacagttcatccttctattctttctcactgataagtaagtctgatttt
acttatggaaactctaatttcatccatcccaaaacttgacaaaatacagt
gacaggcaagatgtaagccaacaaaggttctagagagaagtcagataaag
taatttccttgaagcaccccaatgcacacattctaataaatttatgaaag
tcatgcattaatgaaatatgagttatagacctcccttccttgttccctcc
ctccctccctccttccttccttcctccctccctccctccctctatttgtg
tgtgtgttttttgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173083313_173083376
seq2: B6Ng01-001J17.b_250_335 (reverse)

seq1  GATAGATAGATAGATAGATAGACAG----------------------ACA  28
      ||||||||||| |||||||||||||                      |||
seq2  GATAGATAGAT-GATAGATAGACAGGTACATATATACATACATACATACA  49

seq1  -GACAGATAGACAGATAGATAGATAGATAGATAGATA  64
       || |||||||||||||||||||||||||||||||||
seq2  TGATAGATAGACAGATAGATAGATAGATAGATAGATA  86

seq1: chr17_81717144_81717676
seq2: B6Ng01-001J17.g_68_603 (reverse)

seq1  ACACACACACACACACAC---ACACACACACACAAATAGAGGGAGGGAGG  47
      ||||||||||||||||||   | |||||||||||||||||||||||||||
seq2  ACACACACACACACACACAAAAAACACACACACAAATAGAGGGAGGGAGG  50

seq1  GAGGGAGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAACAAGGAAGGGAG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAACAAGGAAGGGAG  100

seq1  GTCTATAACTCATATTTCATTAATGCATGACTTTCATAAATTTATTAGAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAACTCATATTTCATTAATGCATGACTTTCATAAATTTATTAGAA  150

seq1  TGTGTGCATTGGGGTGCTTCAAGGAAATTACTTTATCTGACTTCTCTCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATTGGGGTGCTTCAAGGAAATTACTTTATCTGACTTCTCTCTA  200

seq1  GAACCTTTGTTGGCTTACATCTTGCCTGTCACTGTATTTTGTCAAGTTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGTTGGCTTACATCTTGCCTGTCACTGTATTTTGTCAAGTTTT  250

seq1  GGGATGGATGAAATTAGAGTTTCCATAAGTAAAATCAGACTTACTTATCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGATGAAATTAGAGTTTCCATAAGTAAAATCAGACTTACTTATCA  300

seq1  GTGAGAAAGAATAGAAGGATGAACTGTGCTGGGTAACATGGCCCTTGACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGAATAGAAGGATGAACTGTGCTGGGTAACATGGCCCTTGACA  350

seq1  CGCCAAGGGATTCAGAGTCCAGTATCAGCTCCTATAAGTTGTATTTCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGGGATTCAGAGTCCAGTATCAGCTCCTATAAGTTGTATTTCTCA  400

seq1  TGGTTCATTTTGGATTTTTTATACTTTGAATTTTATTTAGTTTTCACTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATTTTGGATTTTTTATACTTTGAATTTTATTTAGTTTTCACTTT  450

seq1  TATGATTCTGATAATACACACTTAGTTATTTAGGATACTACAGATAGTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCTGATAATACACACTTAGTTATTTAGGATACTACAGATAGTTG  500

seq1  TTGTTATATACAGAATGTCTTCTTGCACTGGAATTC  533
      ||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATACAGAATGTCTTCTTGCACTGGAATTC  536