BAC Information

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BAC

Clone NameB6Ng01-002B23
Chromosome1 (Build37)
Map Location 41,730,130 - 41,885,205
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002B23.bB6Ng01-002B23.g
ACCDH840243DH840244
length1,1721,130
definitionDH840243|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B23, 5' end.DH840244|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,884,040 - 41,885,205)(41,730,130 - 41,731,269)
sequence
gaattcattaatatagataaaattattctctttataataaatatgggtaa
acgttttaaatattaggaattagtgttgaatatcttaaattagtgcttgc
ctaatgtttcaaagagacagtcatttttactacagaagccattttatcag
aattttaactttccagaaaacatattttgcaagatgccataatcactcaa
gtctaagatacatgattaaaattttgtctaatgctttctaaatttacttg
ggtaaatctgtgaaaatttagaaaaaaatcattgagacattcttcctagt
tgcaaatagacattctaggtaaaatatatcaatgtcacacatctacttat
tttcaaattgatcatctctattctttttaatggtgacatcccatagaatt
tatcttaccatcataacatttatgttgatttgaaatcagtttaaaagctt
agttatgttttcatcctttggcaaaagttcttgttagttaattgtggcaa
gaatctttccatttgtcttagagttgatgaaatgaaggttctctgctttg
caggtgcctgctggcaagggctaggaatcactctaattggtcacgctgac
tggaaaaattacacgaagctggccatgacagaaagctctgacgcttctaa
aaatctctggtaagaagaacagtatcatttctttatatttatgaagacat
aaagtaactataaaatgaattacaactaaacacaatggttttaactactc
ttgcccgagaaaaccactccttgactccaccttaaaatatattctataat
agtagctggtctccatcggaatacaagacaagtattctgtttctcgaaaa
tagatgcagtacttgcacagttaccgttgtaaaggtagttctctttttaa
ctaatggttttcagtagcttgtatttataaatataacaaaactatattgt
aagtgtaactaaagggatgttttgttgtgttgttacatattttgtgccta
agtgcaaaaaaattatttgcatcaattaaaatttagtaaaccacctttga
gtttacatgctttgattctcttgttctttcttggtggtggaaaggccttt
tctatctatctatctatctatctatctatctatctatctatcctattgat
cagaatggtgttgccaagtgat
gaattctacagcatacagaaaatttcaagattcatttgagtcactcagga
attatttaaaactcaaggagaaatgcatatcacaaacaattgcttcaatg
ccctgccataattctccttcacaatgcaggaactacagccacctctgcca
tggagaaagcccaagtaacgcatacacacaccacaccccacaaacacaca
tgcacacccacacaccacaccatacaaacatacaaacacacacagacgct
acacaatgcttatatatgtaatctatttatctgtgtttatatatacatta
tatacatgcatatatatatatatatatatatatatatatatatatatata
aacatatgttgtataaaatttgtatacttgtatgtaacataatagaagcc
atgctaatatcaaaactatactatagactgtatactcccataaacataca
atttatatcagacactggtacaatgtgtaatatacttagtttccacattt
tacatttcaatggaaaaagtaactttttaaatgttgattattttatatta
tagtactattttgtttcttttggttgctgttttcatgttactttacaaat
aatgaagatctaaaatgttaattgtaatttttttgtaaatcatatttcct
gatttgaaatggagggggatgcattttagcagtaaaaagaataccactct
gaacaaaacccgcgttttacacagtgaatttgttgggctgggaacatatg
taatagaaatgcattatcatttattactcaattaaatgattttttaatta
atttttcatttgtttcttctgctatttaagaaaagcaaatttcgaaagct
taaaaaacgatcaacttcccatctcttctcttccttggaataaaaggttt
tgttttttattgttttggttttgggtttttgtttcccctctacagacatc
aaagcgtagtgtgtcagggagagagtgctggctcagctgaggaaggatgg
agcagccagatttttggcagactgaatgtgttaatcttgcagtgaattag
cgatttaaaaagtatttcttcagcctgccatctgaaaaaaatttatggtc
ctattcctttgatttaaatgttaccaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41884040_41885205
seq2: B6Ng01-002B23.b_44_1215 (reverse)

seq1  ATCACTT-GCAACACATTTCTGATCAAATAGATAGATAGATAGATAGATA  49
      ||||||| |||||||  ||||||||||   ||||||||||||||||||||
seq2  ATCACTTGGCAACACCATTCTGATCAATAGGATAGATAGATAGATAGATA  50

seq1  GATAGATAGATAGATAGATAGAAAA-GCCTTT-CACCA-CAAG-AAGAAC  95
      ||||||||||||||||||||||||| |||||| ||||| |||| ||||||
seq2  GATAGATAGATAGATAGATAGAAAAGGCCTTTCCACCACCAAGAAAGAAC  100

seq1  AAGAGATTCAAAGCATGTAAACTC-AAGGTGGTTTACTAAATTTTAATTT  144
      |||||| ||||||||||||||||| |||||||||||||||||||||| ||
seq2  AAGAGAATCAAAGCATGTAAACTCAAAGGTGGTTTACTAAATTTTAA-TT  149

seq1  GATGCAAATAA-TTTTTTGCACTTAGGCACAAAATATGTAACAACACAAC  193
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAATAATTTTTTTGCACTTAGGCACAAAATATGTAACAACACAAC  199

seq1  AAAACATTCCTTTAGTTACACTTACAAATATAGTTTTGTTATATTTATAA  243
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAACATCCCTTTAGTTACACTTAC-AATATAGTTTTGTTATATTTATAA  248

seq1  ATAC-AGCTACTGAAAACCATTAGTTAAAAAGAGAACTACCTTTACAACG  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCTACTGAAAACCATTAGTTAAAAAGAGAACTACCTTTACAACG  298

seq1  GTAACTGTGCAAGTACTGCATCTATTTTCGAGAAACAGAATACTTGTCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTGCAAGTACTGCATCTATTTTCGAGAAACAGAATACTTGTCTT  348

seq1  GTATTCCGATGGAGACCAGCTACTATTATAGAATATATTTTAAGGTGGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCGATGGAGACCAGCTACTATTATAGAATATATTTTAAGGTGGAG  398

seq1  TCAAGGAGTGGTTTTCTCGGGCAAGAGTAATTAAAACCATTGTGTTTAGT  442
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAAGGAGTGGTTTTCTCGGGCAAGAGTAGTTAAAACCATTGTGTTTAGT  448

seq1  TGTAATTCATTTTATAGTTACTTTATGTCTTCATAAATATAAAGAAATGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCATTTTATAGTTACTTTATGTCTTCATAAATATAAAGAAATGA  498

seq1  TACTGTTCTTCTTACCAGAGATTTTTAGAAGCGTCAGAGCTTTCTGTCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCTTCTTACCAGAGATTTTTAGAAGCGTCAGAGCTTTCTGTCAT  548

seq1  GGCCAGCTTCGTGTAATTTTTCCAGTCAGCGTGACCAATTAGAGTGATTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTTCGTGTAATTTTTCCAGTCAGCGTGACCAATTAGAGTGATTC  598

seq1  CTAGCCCTTGCCAGCAGGCACCTGCAAAGCAGAGAACCTTCATTTCATCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCTTGCCAGCAGGCACCTGCAAAGCAGAGAACCTTCATTTCATCA  648

seq1  ACTCTAAGACAAATGGAAAGATTCTTGCCACAATTAACTAACAAGAACTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGACAAATGGAAAGATTCTTGCCACAATTAACTAACAAGAACTT  698

seq1  TTGCCAAAGGATGAAAACATAACTAAGCTTTTAAACTGATTTCAAATCAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAGGATGAAAACATAACTAAGCTTTTAAACTGATTTCAAATCAA  748

seq1  CATAAATGTTATGATGGTAAGATAAATTCTATGGGATGTCACCATTAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGTTATGATGGTAAGATAAATTCTATGGGATGTCACCATTAAAA  798

seq1  AGAATAGAGATGATCAATTTGAAAATAAGTAGATGTGTGACATTGATATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAGATGATCAATTTGAAAATAAGTAGATGTGTGACATTGATATA  848

seq1  TTTTACCTAGAATGTCTATTTGCAACTAGGAAGAATGTCTCAATGATTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTAGAATGTCTATTTGCAACTAGGAAGAATGTCTCAATGATTTT  898

seq1  TTTCTAAATTTTCACAGATTTACCCAAGTAAATTTAGAAAGCATTAGACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATTTTCACAGATTTACCCAAGTAAATTTAGAAAGCATTAGACA  948

seq1  AAATTTTAATCATGTATCTTAGACTTGAGTGATTATGGCATCTTGCAAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAATCATGTATCTTAGACTTGAGTGATTATGGCATCTTGCAAAA  998

seq1  TATGTTTTCTGGAAAGTTAAAATTCTGATAAAATGGCTTCTGTAGTAAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCTGGAAAGTTAAAATTCTGATAAAATGGCTTCTGTAGTAAAA  1048

seq1  ATGACTGTCTCTTTGAAACATTAGGCAAGCACTAATTTAAGATATTCAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTCTCTTTGAAACATTAGGCAAGCACTAATTTAAGATATTCAAC  1098

seq1  ACTAATTCCTAATATTTAAAACGTTTACCCATATTTATTATAAAGAGAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTCCTAATATTTAAAACGTTTACCCATATTTATTATAAAGAGAAT  1148

seq1  AATTTTATCTATATTAATGAATTC  1166
      ||||||||||||||||||||||||
seq2  AATTTTATCTATATTAATGAATTC  1172

seq1: chr1_41730130_41731269
seq2: B6Ng01-002B23.g_66_1195

seq1  GAATTCTACAGCATACAGAAAATTTCAAGATTCATTTGAGTCACTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGCATACAGAAAATTTCAAGATTCATTTGAGTCACTCAGGA  50

seq1  ATTATTTAAAACTCAAGGAGAAATGCATATCACAAACAATTGCTTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAACTCAAGGAGAAATGCATATCACAAACAATTGCTTCAATG  100

seq1  CCCTGCCATAATTCTCCTTCACAATGCAGGAACTACAGCCACCTCTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCATAATTCTCCTTCACAATGCAGGAACTACAGCCACCTCTGCCA  150

seq1  TGGAGAAAGCCCAAGTAACGCATACACACACCACACCCCACAAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGCCCAAGTAACGCATACACACACCACACCCCACAAACACACA  200

seq1  TGCACACCCACACACCACACCATACAAACATACAAACACACACAGACGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCCACACACCACACCATACAAACATACAAACACACACAGACGCT  250

seq1  ACACAATGCTTATATATGTAATCTATTTATCTGTGTTTATATATACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCTTATATATGTAATCTATTTATCTGTGTTTATATATACATTA  300

seq1  TATACATGCATATATATATATATATATATATATATATATATATATATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGCATATATATATATATATATATATATATATATATATATATATA  350

seq1  AACATATGTTGTATAAAATTTGTATACTTGTATGTAACATAATAGAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTTGTATAAAATTTGTATACTTGTATGTAACATAATAGAAGCC  400

seq1  ATGCTAATATCAAAACTATACTATAGACTGTATACTCCCATAAACATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATATCAAAACTATACTATAGACTGTATACTCCCATAAACATACA  450

seq1  ATTTATATCAGACACTGGTACAATGTGTAATATACTTAGTTTCCACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATCAGACACTGGTACAATGTGTAATATACTTAGTTTCCACATTT  500

seq1  TACATTTCAATGGAAAAAGTAACTTTTTAAATGTTGATTATTTTATATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAATGGAAAAAGTAACTTTTTAAATGTTGATTATTTTATATTA  550

seq1  TAGTACTATTTTGTTTCTTTTGGTTGCTGTTTTCATGTTACTTTACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTATTTTGTTTCTTTTGGTTGCTGTTTTCATGTTACTTTACAAAT  600

seq1  AATGAAGATCTAAAATGTTAATTGTAATTTTTTTGTAAATCATATTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATCTAAAATGTTAATTGTAATTTTTTTGTAAATCATATTTCCT  650

seq1  GATTTGAAATGGAGGGGGATGCA-TTTAGCAGTAAAAAGAATACCACTCT  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATTTGAAATGGAGGGGGATGCATTTTAGCAGTAAAAAGAATACCACTCT  700

seq1  GAACAAAACCCGCGTTTTACACAGTGAATTTGTTGGGCTGGGAACATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAACCCGCGTTTTACACAGTGAATTTGTTGGGCTGGGAACATATG  750

seq1  TAATAGAAATGCATTATCATTTATTACTCAATTAAATGATTCTTTAATTA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAATAGAAATGCATTATCATTTATTACTCAATTAAATGATTTTTTAATTA  800

seq1  A-TTTTCATTTGTTTCTTCTGCTATTTAAGAAAAGCAAATTTCGAAAGCT  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATTTGTTTCTTCTGCTATTTAAGAAAAGCAAATTTCGAAAGCT  850

seq1  TAAAAAACGATCAACTTCCCATCTCTTCTCTTCCTTGGAATAAAAGGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACGATCAACTTCCCATCTCTTCTCTTCCTTGGAATAAAAGGTTT  900

seq1  TGTTTTTTATTGTTTTGGTTTT-GGTTTTTGTTTTCCCTCTTACAAGACA  947
      |||||||||||||||||||||| ||||||||||| ||||| ||| |||||
seq2  TGTTTTTTATTGTTTTGGTTTTGGGTTTTTGTTTCCCCTC-TAC-AGACA  948

seq1  TCAGAGCGGAGTGTGTCAGGGGAGAGAGTGGCTGGCTCAGCTGAGGAAGG  997
      ||| |||| ||||||||| |||||||||| ||||||||||||||||||||
seq2  TCAAAGCGTAGTGTGTCA-GGGAGAGAGT-GCTGGCTCAGCTGAGGAAGG  996

seq1  ATGGGAGCAGGCAGATTTTTGGCAGAACTGAATGTGTTAATC-TGCAGTG  1046
      || ||||||| |||||||||||||| |||||||||||||||| |||||||
seq2  AT-GGAGCAGCCAGATTTTTGGCAG-ACTGAATGTGTTAATCTTGCAGTG  1044

seq1  AAATTAGCGATTTAAAAAAGTATTTC-TCAG-CTGCACATCTGAAAAAAA  1094
       |||||||||||| |||||||||||| |||| |||| |||||||||||||
seq2  -AATTAGCGATTT-AAAAAGTATTTCTTCAGCCTGC-CATCTGAAAAAAA  1091

seq1  ATTATGGGTCTAATTTTCCTTTGGAAATTTAAAATGTTACAAACTC  1140
       ||||||  |||   ||||||||   |||| ||||||||| |||||
seq2  TTTATGGTCCTA---TTCCTTTG---ATTT-AAATGTTACCAACTC  1130