BAC Information

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BAC

Clone NameB6Ng01-002H20
Chromosome1 (Build37)
Map Location 51,874,211 - 52,019,065
singlet/doubletdoublet
Overlap geneMyo1b, EG667010, LOC667014
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002H20.bB6Ng01-002H20.g
ACCDH840496DH840497
length1,097740
definitionDH840496|Mus musculus domesticus DNA, BAC clone: B6Ng01-002H20, 5' end.DH840497|Mus musculus domesticus DNA, BAC clone: B6Ng01-002H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,874,211 - 51,875,309)(52,018,327 - 52,019,065)
sequence
gaattcaagggtggggaggtggagtagatgaaggaacaccgtcatagaag
caggggacgagggaagggttagggggttttggaagggggaccagaaaagg
agataacatttgaaatgtaaataaagaaaatagccagtaaaaaaaataaa
ataaaataaaaagagagaaagttattaccaaggtatcatttgaagggaga
cataagtaatacaatatgccacccagcatgtacaggtctagagagcaccc
agcatgtgcaggtctagagagcacccagcatgtgcaggtctagagagcac
ccagcatgtgcaggtcttgagagcacccagcatgtgcaggtctagagagc
acccagcttatgcaggtaaaggtaagaggcatgacagaggcttgctggaa
cctgtctgcaaagatcactccagctacatgggaggtgtatacatacttat
agtaaaacacaaaaacaaatccatacattttaatttttttcctggttctt
tgagacagggtttctctgtagctttggctgtcctggaacttaccctgtag
accaggctgacctcaaactcagagatccacctgtctctgtctcccaagtg
ctgggattaaaggtgtgtgccaccactgctgggctaaaattcttattgaa
tggtagcacatgccttttattaccaccactcgagaggcagaagcaggact
atttccttgagtttaagaccagcatggtctttcagacagagttctagaac
agtttagggctacacaaacaacaaacaagcaaaagtcgtattgaatgaga
ggctgagctggacaaaagcactttctaacagtgcaatggccacccgcttc
cctccagagccgatccagcttagcagttctgcatacagtagatgtttcac
ccactgcttgaggcaataatgctaattagtcttctttttttaaagaaaat
aaaaaggttccagaagtcatctaaatacttggggcatatgggagacactg
agtatgtccttgatggactggttacaagtgtcagctaggacaatggtctt
actacaggctcttgccgagttctctgtaagtgaactataaattcatc
gaattcagttgtccacttgccccgcccccattttgcaggaaaaaaaaaaa
tccagttccttaaaacttgcctcggaggctttattttccaagcctttagc
cactgcccccttttttcgttccctggccaaggtccttgcttctctttcta
gctgcggctctctaaactacacctggttcatgagaagggatctgctggtg
ctgacaggaatgggaaaaacccatgtttccatggtcacttgtgagccatc
aaggatgtgagcagtcatgacgaagcatctcccagccactatcttaaaca
gcgtagaaatctctgcgttctcaggaataggcaagaagagaaaggagata
gaagagggttgtgtcaaagaggttatacaaagtctagctataaagtcagc
tctgcttggttgtaatgatcccctggatcccaaagcccggagtcacactg
ttgttaggacttacctctctctctctctctctctctctctctctctctct
ctctctctctctgagggggggggtgtgtgtgtgtgtgtgaacacacttgt
tgatgtgtttctaaatacatctctgatttttttgtaatctctaattctta
caagtggaaattctgtggataaatttttaaaaaagtttattttttttttt
cacggtatgggtatttttttgcacctgcattcatataatatgtacgccgt
gtgcacgtccgctcccaaaatcccctgaattggagtgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51874211_51875309
seq2: B6Ng01-002H20.b_45_1140

seq1  GAATTCAAGGGTGGGGAGGTGGAGTAGATGAAGGAACACCGTCATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGTGGGGAGGTGGAGTAGATGAAGGAACACCGTCATAGAAG  50

seq1  CAGGGGACGAGGGAAGGGTTAGGGGGTTTTGGAAGGGGGACCAGAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGACGAGGGAAGGGTTAGGGGGTTTTGGAAGGGGGACCAGAAAAGG  100

seq1  AGATAACATTTGAAATGTAAATAAAGAAAATAGCCAGTAAAAAAAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACATTTGAAATGTAAATAAAGAAAATAGCCAGTAAAAAAAATAAA  150

seq1  ATAAAATAAAAAGAGAGAAAGTTATTACCAAGGTATCATTTGAAGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAAAGAGAGAAAGTTATTACCAAGGTATCATTTGAAGGGAGA  200

seq1  CATAAGTAATACAATATGCCACCCAGCATGTACAGGTCTAGAGAGCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAATACAATATGCCACCCAGCATGTACAGGTCTAGAGAGCACCC  250

seq1  AGCATGTGCAGGTCTAGAGAGCACCCAGCATGTGCAGGTCTAGAGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCAGGTCTAGAGAGCACCCAGCATGTGCAGGTCTAGAGAGCAC  300

seq1  CCAGCATGTGCAGGTCTTGAGAGCACCCAGCATGTGCAGGTCTAGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTGCAGGTCTTGAGAGCACCCAGCATGTGCAGGTCTAGAGAGC  350

seq1  ACCCAGCTTATGCAGGTAAAGGTAAGAGGCATGACAGAGGCTTGCTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTTATGCAGGTAAAGGTAAGAGGCATGACAGAGGCTTGCTGGAA  400

seq1  CCTGTCTGCAAAGATCACTCCAGCTACATGGGAGGTGTATACATACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGCAAAGATCACTCCAGCTACATGGGAGGTGTATACATACTTAT  450

seq1  AGTAAAACACAAAAACAAATCCATACATTTTAATTTTTTTCCTGGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACACAAAAACAAATCCATACATTTTAATTTTTTTCCTGGTTCTT  500

seq1  TGAGACAGGGTTTCTCTGTAGCTTTGGCTGTCCTGGAACTTACCCTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTAGCTTTGGCTGTCCTGGAACTTACCCTGTAG  550

seq1  ACCAGGCTGACCTCAAACTCAGAGATCCACCTGTCTCTGTCTCCCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGACCTCAAACTCAGAGATCCACCTGTCTCTGTCTCCCAAGTG  600

seq1  CTGGGATTAAAGGTGTGTGCCACCACTGCTGGGCTAAAATTCTTATTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGGTGTGTGCCACCACTGCTGGGCTAAAATTCTTATTGAA  650

seq1  TGGTAGCACATGCC-TTTATTACCACCACTCGAGAGGCAGAAGCAGGACT  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGTAGCACATGCCTTTTATTACCACCACTCGAGAGGCAGAAGCAGGACT  700

seq1  ATTTCCTTGAGTTCAAGACCAGCATGGTC-TTCAGACAGAGTCCTAGAAC  748
      ||||||||||||| ||||||||||||||| |||||||||||| |||||||
seq2  ATTTCCTTGAGTTTAAGACCAGCATGGTCTTTCAGACAGAGTTCTAGAAC  750

seq1  AG-TTAGGGCTACACAAACAACAAACAAGCAAAAGTCGTAATGAATGAGA  797
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTTTAGGGCTACACAAACAACAAACAAGCAAAAGTCGTATTGAATGAGA  800

seq1  GGCTGAGGCTGGACAAAAGCACTTTCTAACAGTGCAAATGCCACCCGCTT  847
      |||||| ||||||||||||||||||||||||||||||  |||||||||||
seq2  GGCTGA-GCTGGACAAAAGCACTTTCTAACAGTGCAATGGCCACCCGCTT  849

seq1  CCCTCCAGAGCCGATCCAGCTTAGCAG-TCTGCATACAGTAGATGTTTCA  896
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCTCCAGAGCCGATCCAGCTTAGCAGTTCTGCATACAGTAGATGTTTCA  899

seq1  CCCACTGC-TGAGGCAATAATGCTAATAAGTC-TCTTTCTTAAAAGAAAA  944
      |||||||| |||||||||||||||||| |||| ||||| || ||||||||
seq2  CCCACTGCTTGAGGCAATAATGCTAATTAGTCTTCTTTTTTTAAAGAAAA  949

seq1  TAAAAAGGTTCCAGAAGTCAATCTAAAAATAC-TGGGGCATATGGGAGAC  993
      ||||||||||||||||||| ||||  |||||| |||||||||||||||||
seq2  TAAAAAGGTTCCAGAAGTC-ATCT--AAATACTTGGGGCATATGGGAGAC  996

seq1  ACTGAGGTATGTCCTTGAATGTACTGGTTACAAGTGTCAGCTAGGACCAA  1043
      ||||| ||||||||||| ||| |||||||||||||||||||||||| |||
seq2  ACTGA-GTATGTCCTTG-ATGGACTGGTTACAAGTGTCAGCTAGGA-CAA  1043

seq1  TGTGTCTTAATTACAGGCTCTGTCAGAGTTCTCAGTAAAGTGACCAATAA  1093
      || ||||| | ||||||||||  | |||||||| || |||||| | ||||
seq2  TG-GTCTT-ACTACAGGCTCTTGCCGAGTTCTCTGT-AAGTGAACTATAA  1090

seq1  ATTCAT  1099
      ||||||
seq2  ATTCAT  1096

seq1: chr1_52018327_52019065
seq2: B6Ng01-002H20.g_66_805 (reverse)

seq1  TGTCACTCCAGTTCCAGGGGATCTATGGCAACAGACATGCACATGGTGTA  50
      |||||||||| || |||||||| | ||| | | ||| |||||| || |||
seq2  TGTCACTCCAATT-CAGGGGAT-TTTGGGAGCGGACGTGCACACGGCGTA  48

seq1  CATA-TATATGAATGCAGGTAAAAAAAAATACCCATACACGTTAAAAAAA  99
      |||| |||||||||||||||  |||||||||||||||| ||| |||||||
seq2  CATATTATATGAATGCAGGTGCAAAAAAATACCCATAC-CGTGAAAAAAA  97

seq1  AAA--AAAC-TTTTTAAAAAGTGAGCCACAGAAATTCCACTTCTAAGAAT  146
      |||  |||| |||||||||| | | |||||||| |||||||| |||||||
seq2  AAAATAAACTTTTTTAAAAATTTATCCACAGAATTTCCACTTGTAAGAAT  147

seq1  TAGTGATTACAAAAGAATCAGAGATGTATTTAGGTACACATCAACAAGCG  196
      ||| |||||||||| ||||||||||||||||||  ||||||||||||| |
seq2  TAGAGATTACAAAAAAATCAGAGATGTATTTAGAAACACATCAACAAGTG  197

seq1  TGTACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGA  246
      ||| ||||||||||||||||| | | | | ||||||||||||||||||||
seq2  TGTTCACACACACACACACACCCCCCCCCTCAGAGAGAGAGAGAGAGAGA  247

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAAGTCCTAACAACAGTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAAGTCCTAACAACAGTGTG  297

seq1  ACTCCGGGCTTTGGGATCCAGGGGATCATTACAACCAAGCAGAGCTGACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGGGCTTTGGGATCCAGGGGATCATTACAACCAAGCAGAGCTGACT  347

seq1  TTATAGCTAGACTTTGTATAACCTCTTTGACACAACCCTCTTCTATCTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTAGACTTTGTATAACCTCTTTGACACAACCCTCTTCTATCTCC  397

seq1  TTTCTCTTCTTGCCTATTCCTGAGAACGCAGAGATTTCTACGCTGTTTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTTGCCTATTCCTGAGAACGCAGAGATTTCTACGCTGTTTAA  447

seq1  GATAGTGGCTGGGAGATGCTTCGTCATGACTGCTCACATCCTTGATGGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGCTGGGAGATGCTTCGTCATGACTGCTCACATCCTTGATGGCT  497

seq1  CACAAGTGACCATGGAAACATGGGTTTTTCCCATTCCTGTCAGCACCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGACCATGGAAACATGGGTTTTTCCCATTCCTGTCAGCACCAGC  547

seq1  AGATCCCTTCTCATGAACCAGGTGTAGTTTAGAGAGCCGCAGCTAGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTTCTCATGAACCAGGTGTAGTTTAGAGAGCCGCAGCTAGAAAG  597

seq1  AGAAGCAAGGACCTTGGCCAGGGAACGAAAAAAGGGGGCAGTGGCTAAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGGACCTTGGCCAGGGAACGAAAAAAGGGGGCAGTGGCTAAAG  647

seq1  GCTTGGAAAATAAAGCCTCCGAGGCAAGTTTTAAGGAACTGGATTTTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAAATAAAGCCTCCGAGGCAAGTTTTAAGGAACTGGATTTTTTT  697

seq1  TTTTCCTGCAAAATGGGGGCGGGGCAAGTGGACAACTGAATTC  739
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGCAAAATGGGGGCGGGGCAAGTGGACAACTGAATTC  740