BAC Information

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BAC

Clone NameB6Ng01-002K05
Chromosome1 (Build37)
Map Location 51,937,724 - 52,078,434
singlet/doubletdoublet
Overlap geneMyo1b, EG667010, LOC667014, Stat4
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneLOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K05.bB6Ng01-002K05.g
ACCDH840602DH840603
length9941,101
definitionDH840602|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K05, 5' end.DH840603|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,077,866 - 52,078,434)(51,937,724 - 51,938,829)
sequence
gaattccaaggtccatcctgacagtagagagcaagttacaaaaggcaggc
agattgtttcacaaacaatgcatagtttgcctcccatgtctatccactaa
ggcagatatccaggttagatgacaagaaacaggcagtttcgtgacattaa
gagcatttatagaggcctcattctttaagtaccaacatactgttggctac
ttttcttgttggtgcagagcaaaatatctgaggaaaacaacttaaggaag
gatttattgtggcttacatttggagcatacagtccatcacagtggggaaa
tcgtgacagcaagagcatgaagcacctggtcacatcagatgcaacattga
gaagcagagagaaaccaatgtgagcactcagctttgatttggtctttctg
ttcagtctgggatcccagaccaaggaatagctctacccacattttgggag
agttttcttagttaaatattaactctgtaaactccatgaaagacatccga
tcctaacaagtacagctacctatgtaacttcttttattttattttatttt
attttattttatttatttatttttttttgtatatgagtgctctgtctgca
tagagagcttgcatgccagaagagggcatcgaattccactacagatggtc
atgagccaccatatggttgctgaaaattgaactcagggcctctggaagag
caaccagtgctcttaaatgctgagccatttctccattcccacctatacca
atttatacttcactatgcatcgtacttggaggagcacagagcagctggca
agtacaggatattgaggcaatcagatgattatggaacaacatgactgaag
aatatttaagactcactcacaggagctaaggaggtggctcactggttagg
catgcttgctatgcaaggatcaggacctgcattcaaatcctcagcaccac
ataacaatgggcatggctgcatgtgcctgtgactcacactgggg
gaattctcctgcactgtactcggttaagaagccttgctctatgtgggcat
cagtgcagcatagtcagacaaactcataaatgtcctgagggagcaagaga
atgctatctgtattattctagaacctgccttttaccactggaaatacaga
caccattgtcatctaacatgacatgtttaaaggcatggaagggagagcac
acagctcacagaagagtagccatcaagtatcacggaaaatgactgatgtc
aatatctacagctaaagttaattttctacttctgtcatatagccagaaag
ggcattcgagaaatagtttagaaaataaaattaggtagcgcctagaccca
gacattttgtctgctagatccactttgttacgagggagactgttttattt
ttagtggccacaacaaatcaggtattcaaatgcacagaatgcccttctct
cctagtttcaattcatctaaaagggaactgtgctgcatagagccaaaaag
aaaaacgatcggcaccattagttaggatataattgattcctcctgtctga
gtctcagagaccaatgtctaaaggccatcttttatttgatatcagaccat
ctttcatttgctatcagaccatctttcatttgatagcagaccatactttc
aattaaagccacagaatggccaggctttcccacctgaagccatcctgcta
caccaagaagggaagtgactgacaccaagccaaacaaggccatccccctg
ctccacagtagcattcaatgccctttccatttggatcaccatcttaagga
gactgaactgttactatccccaggtgggcattcagttatcaaagagatat
cctaaaagtggggagtcacacgtctccctttactgtgaaacttccagatg
aggacttatttcacacacaaagaaattgattagtgagagcttccctggag
ctgctctgagtgctgttgtttaagtgctgcccttgagtgctgtgttaagt
gcttctgttgtttggagggggagtctctgggaagtgaacagtcatgtgct
gattcacagaatgtggtagtgctatctcttgggaggatacagcagcatct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52077866_52078434
seq2: B6Ng01-002K05.b_47_615 (reverse)

seq1  TAAATAAATAAAATAAAATAAAATAAAATAAAATAAAAGAAGTTACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAAATAAAATAAAATAAAATAAAATAAAAGAAGTTACATAG  50

seq1  GTAGCTGTACTTGTTAGGATCGGATGTCTTTCATGGAGTTTACAGAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTACTTGTTAGGATCGGATGTCTTTCATGGAGTTTACAGAGTTA  100

seq1  ATATTTAACTAAGAAAACTCTCCCAAAATGTGGGTAGAGCTATTCCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAACTAAGAAAACTCTCCCAAAATGTGGGTAGAGCTATTCCTTGG  150

seq1  TCTGGGATCCCAGACTGAACAGAAAGACCAAATCAAAGCTGAGTGCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATCCCAGACTGAACAGAAAGACCAAATCAAAGCTGAGTGCTCAC  200

seq1  ATTGGTTTCTCTCTGCTTCTCAATGTTGCATCTGATGTGACCAGGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTCTCTCTGCTTCTCAATGTTGCATCTGATGTGACCAGGTGCTT  250

seq1  CATGCTCTTGCTGTCACGATTTCCCCACTGTGATGGACTGTATGCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTGCTGTCACGATTTCCCCACTGTGATGGACTGTATGCTCCAA  300

seq1  ATGTAAGCCACAATAAATCCTTCCTTAAGTTGTTTTCCTCAGATATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGCCACAATAAATCCTTCCTTAAGTTGTTTTCCTCAGATATTTTG  350

seq1  CTCTGCACCAACAAGAAAAGTAGCCAACAGTATGTTGGTACTTAAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACCAACAAGAAAAGTAGCCAACAGTATGTTGGTACTTAAAGAAT  400

seq1  GAGGCCTCTATAAATGCTCTTAATGTCACGAAACTGCCTGTTTCTTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTCTATAAATGCTCTTAATGTCACGAAACTGCCTGTTTCTTGTCA  450

seq1  TCTAACCTGGATATCTGCCTTAGTGGATAGACATGGGAGGCAAACTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTGGATATCTGCCTTAGTGGATAGACATGGGAGGCAAACTATGC  500

seq1  ATTGTTTGTGAAACAATCTGCCTGCCTTTTGTAACTTGCTCTCTACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTGAAACAATCTGCCTGCCTTTTGTAACTTGCTCTCTACTGTC  550

seq1  AGGATGGACCTTGGAATTC  569
      |||||||||||||||||||
seq2  AGGATGGACCTTGGAATTC  569

seq1: chr1_51937724_51938829
seq2: B6Ng01-002K05.g_69_1169

seq1  GAATTCTCCTGCACTGTACTCGGTTAAGAAGCCTTGCTCTATGTGGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCACTGTACTCGGTTAAGAAGCCTTGCTCTATGTGGGCAT  50

seq1  CAGTGCAGCATAGTCAGACAAACTCATAAATGTCCTGAGGGAGCAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGCATAGTCAGACAAACTCATAAATGTCCTGAGGGAGCAAGAGA  100

seq1  ATGCTATCTGTATTATTCTAGAACCTGCCTTTTACCACTGGAAATACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCTGTATTATTCTAGAACCTGCCTTTTACCACTGGAAATACAGA  150

seq1  CACCATTGTCATCTAACATGACATGTTTAAAGGCATGGAAGGGAGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGTCATCTAACATGACATGTTTAAAGGCATGGAAGGGAGAGCAC  200

seq1  ACAGCTCACAGAAGAGTAGCCATCAAGTATCACGGAAAATGACTGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCACAGAAGAGTAGCCATCAAGTATCACGGAAAATGACTGATGTC  250

seq1  AATATCTACAGCTAAAGTTAATTTTCTACTTCTGTCATATAGCCAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTACAGCTAAAGTTAATTTTCTACTTCTGTCATATAGCCAGAAAG  300

seq1  GGCATTCGAGAAATAGTTTAGAAAATAAAATTAGGTAGCGCCTAGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCGAGAAATAGTTTAGAAAATAAAATTAGGTAGCGCCTAGACCCA  350

seq1  GACATTTTGTCTGCTAGATCCACTTTGTTACGAGGGAGACTGTTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTGTCTGCTAGATCCACTTTGTTACGAGGGAGACTGTTTTATTT  400

seq1  TTAGTGGCCACAACAAATCAGGTATTCAAATGCACAGAATGCCCTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCCACAACAAATCAGGTATTCAAATGCACAGAATGCCCTTCTCT  450

seq1  CCTAGTTTCAATTCATCTAAAAGGGAACTGTGCTGCATAGAGCCAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTCAATTCATCTAAAAGGGAACTGTGCTGCATAGAGCCAAAAAG  500

seq1  AAAAACGATCGGCACCATTAGTTAGGATATAATTGATTCCTCCTGTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGATCGGCACCATTAGTTAGGATATAATTGATTCCTCCTGTCTGA  550

seq1  GTCTCAGAGACCAATGTCTAAAGGCCATCTTTTATTTGATATCAGACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGACCAATGTCTAAAGGCCATCTTTTATTTGATATCAGACCAT  600

seq1  CTTTCATTTGCTATCAGACCATCTTTCATTTGATAGCAGACCATACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTGCTATCAGACCATCTTTCATTTGATAGCAGACCATACTTTC  650

seq1  AATTAAAGCCACAGAATGGCCAGGCTTTCCCACCTGAAGCCATCCTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGCCACAGAATGGCCAGGCTTTCCCACCTGAAGCCATCCTGCTA  700

seq1  CACCAAGAAGGGAAGTGACTGACACCAAGCCAAACAAGGCCATCCCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAAGGGAAGTGACTGACACCAAGCCAAACAAGGCCATCCCCCTG  750

seq1  CTCCACAGTAGCATTCAATGCCCTTTCCATTTGGATCACCATCTTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGTAGCATTCAATGCCCTTTCCATTTGGATCACCATCTTAAGGA  800

seq1  GACTGAACTGTTACTATCCCCAGGTGGGCATTCAGTTATCAAAGAGATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACTGTTACTATCCCCAGGTGGGCATTCAGTTATCAAAGAGATAT  850

seq1  CCTAAAAGT-GGGAGTCACACGTCTCCCTTTACTGTGAAACTTCCAGATG  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGTGGGGAGTCACACGTCTCCCTTTACTGTGAAACTTCCAGATG  900

seq1  AGGACTTATTTCACACACAAAGAAATTGATTAGTGAGAGCTTCCCTGGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTATTTCACACACAAAGAAATTGATTAGTGAGAGCTTCCCTGGAG  950

seq1  CTGCCCTGAGTGCTGTGGTTTAAGTGCTGCCC-TGAGTGCTGTGGTTTAA  998
      |||| ||||||||||| ||||||||||||||| |||||||||||  ||||
seq2  CTGCTCTGAGTGCTGTTGTTTAAGTGCTGCCCTTGAGTGCTGTG--TTAA  998

seq1  GTGCTTCTGTGGTTTGGAGGGGGAGTCTCTGGGAGGTGAACAGGTCATGT  1048
      |||||||||| ||||||||||||||||||||||| ||||||| |||||||
seq2  GTGCTTCTGTTGTTTGGAGGGGGAGTCTCTGGGAAGTGAACA-GTCATGT  1047

seq1  GCTGAATCCACAAGAATGTGGTTAGTGCTATCCTCCTGGGAGGACACAGC  1098
      |||| || ||| ||||||||| ||||||||| ||| |||||||| |||||
seq2  GCTG-ATTCAC-AGAATGTGG-TAGTGCTAT-CTCTTGGGAGGATACAGC  1093

seq1  AGCATCTG  1106
      ||||||||
seq2  AGCATCTG  1101