BAC Information

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BAC

Clone NameB6Ng01-002M23
Chromosome1 (Build37)
Map Location 49,459,481 - 49,573,721
singlet/doubletdoublet
Overlap geneLOC100041981
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M23.bB6Ng01-002M23.g
ACCDH840722DH840723
length1,1461,109
definitionDH840722|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M23, 5' end.DH840723|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,459,481 - 49,460,460)(49,572,702 - 49,573,721)
sequence
gaattctttttgtatttgtaactgaaccatattaaattctgcatatcaaa
atttctttattgagtcatcagttttggaaatatagtgtgtcattgtttct
agatttttgtgaatgatacttccataaagagtgttcatgttacttggaca
tattgacatattaatttcactcattctggttataaacttagtgtagcctc
ccataagcctaaaacaggctaagccagaacctgaccttgctgccactaag
aagattatctagggtggagccttcctacctagatcactctattgttctgc
cactgctgctgtttctcttcaagatactgctaacctgctgagaggcccct
ggagctattctggaaactacacaaatcatctcctgcagctggttccaggc
tccaaggatgaactggctggaatggactaccccccccccccttttataag
gcatgttcctcaacattaaaatttgaactttgaacagactagcatgtctt
ggttccattgtttctcgacttgcctaggcttcctcttttcttccagattc
caggatgctttccaggcttgaacccagacatgtgagccactggccgaccc
caaaaccttagaagtcgtaatactagatcatgagagatttttctgttttt
gttttttttttttcttatattgaaatacagtggaacttgacctctcttat
tcattttctaatgaaagcaacacacatacataattcatgaaaatatttaa
aaagatatctctaaacctctagaaaaccattctttctaattttaagtatt
tttactatatacatgcatatttttcagtcttaattttacataaatgttta
attttaatgtatttttgtgtgtgtccaaaatgttaatgaataggaatgat
agctgataactatattgagaatgaataaaattcagagaaaatcttgggaa
tatgtgacaagaagaagccccctctattagacaagggaaagcaaaccttc
agaagaagtagaagtgaagaattccagtacactttccaactgcttaaagc
cttatactaatttcctcagcctacaaacatgaacttttgtaagtaagttt
tctccagtaactccattcaataaagatgccactgaaattcctatgc
gaattccaagcccatgatcttgctcaaggacatttctaggactgttggaa
cactggcggaaggctttagccatgtcagaattcaattttataaagcactt
ataataggaaaatactgaaagagagcacgtggatccatacactagactaa
cgcgggaatggaaaattaatgtatgggtagagaatgctagactccaggag
gagagcttacttgaaactcttttgcctcatgagtaacttttaagcctttc
ggcttgtccagctgactcgaccggagagcgtagcagttttcctttgtttc
gacaggagaagaaaagctatcaattccattcaaattgataaaactcggtt
ttgactgtgggtgccccctcatagtcttggctgcagacaggaaaaagaaa
tcaagaagaaggaggaggaggagtacaacaatggtgatgaggacaatgag
gagaggggaggagaggaaggagaagagcttttcctctacatggaaatagc
tctgaatccttgctgataatgaaaattcatccaccaagctcttcagctat
acatagccaataaatcctggctatggaatcgttaggactcatgccgtctt
taaaatggaatggataaaaaatactttcagtttgataaaataatctaaac
taacttgaaaaagtaagataggtgacttgcctgctcatacagagagcaaa
acaaaacaaaacaatttagctgactgtggacactgcatattccatgctta
tgttactatagaaatgtatagagatgtatattacctgtaaaagattatat
gtttgcaggcaccaatttcagttaaagcagctctgacaagattcaccttg
aggataatgaaaagaatattgagatgctaagacacctttatcccagcatc
ctgccttatccaacttcagctaacccaatagctgattctccagatgttca
tatttgggacagattcaaagcagctagttagcatgttacagcttttcgga
ttgttcaagtcaggattataattgagccctgcacaagaagactgggacag
caatatgtaacttaaaatttgggatagtttagctctctttgccaagatca
agtgaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49459481_49460460
seq2: B6Ng01-002M23.b_204_1191

seq1  TATTAATTTCACTCATTCTGGTTATAAACTTAGTGTAGCCTCCCATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCACTCATTCTGGTTATAAACTTAGTGTAGCCTCCCATAAGC  50

seq1  CTAAAACAGGCTAAGCCAGAACCTGACCTTGCTGCCACTAAGAAGATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGGCTAAGCCAGAACCTGACCTTGCTGCCACTAAGAAGATTAT  100

seq1  CTAGGGTGGAGCCTTCCTACCTAGATCACTCTATTGTTCTGCCACTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTGGAGCCTTCCTACCTAGATCACTCTATTGTTCTGCCACTGCTG  150

seq1  CTGTTTCTCTTCAAGATACTGCTAACCTGCTGAGAGGCCCCTGGAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTCTTCAAGATACTGCTAACCTGCTGAGAGGCCCCTGGAGCTAT  200

seq1  TCTGGAAACTACACAAATCATCTCCTGCAGCTGGTTCCAGGCTCCAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAACTACACAAATCATCTCCTGCAGCTGGTTCCAGGCTCCAAGGA  250

seq1  TGAACTGGCTGGAATGGACTACCCCCCCCCCCCTTTTATAAGGCATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGCTGGAATGGACTACCCCCCCCCCCCTTTTATAAGGCATGTTC  300

seq1  CTCAACATTAAAATTTGAACTTTGAACAGACTAGCATGTCTTGGTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATTAAAATTTGAACTTTGAACAGACTAGCATGTCTTGGTTCCAT  350

seq1  TGTTTCTCGACTTGCCTAGGCTTCCTCTTTTCTTCCAGATTCCAGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCGACTTGCCTAGGCTTCCTCTTTTCTTCCAGATTCCAGGATGC  400

seq1  TTTCCAGGCTTGAACCCAGACATGTGAGCCACTGGCCGACCCCAAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGCTTGAACCCAGACATGTGAGCCACTGGCCGACCCCAAAACCT  450

seq1  TAGAAGTCGTAATACTAGATCATGAGAGATTTTTCTGTTTTTGTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCGTAATACTAGATCATGAGAGATTTTTCTGTTTTTGTTTTTTT  500

seq1  TTTTTCTTATATTGAAATACAGTGGAACTTGACCTCTCTTATTCATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATATTGAAATACAGTGGAACTTGACCTCTCTTATTCATTTTC  550

seq1  TAATGAAAGCAACACACATACATAATTCATGAAAATATTTAAAAAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAGCAACACACATACATAATTCATGAAAATATTTAAAAAGATAT  600

seq1  CTCTAAACCTCTAGAAAACCATTCTTTCTAATTTTAAGTATTTTTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCTCTAGAAAACCATTCTTTCTAATTTTAAGTATTTTTACTAT  650

seq1  ATACATGCATA-TTTTCAGTCTTAATTTTACATAAATGTTTAATTTTAAT  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCATATTTTTCAGTCTTAATTTTACATAAATGTTTAATTTTAAT  700

seq1  GTATTTTTGTGTGTGTCCAAAATGTTAATGAATAGGAATGATAGCTGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTGTGTGTGTCCAAAATGTTAATGAATAGGAATGATAGCTGATA  750

seq1  ACTATATTGAGAATGAATAAAAATTCAGAGAAAATCTTGGGAATATGTGA  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTATATTGAGAATGAAT-AAAATTCAGAGAAAATCTTGGGAATATGTGA  799

seq1  CAAGAAGAAGCCCCCTCTATTAGACAAGGGAAAGCAAAACTTCAG-AGAA  848
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  CAAGAAGAAGCCCCCTCTATTAGACAAGGGAAAGCAAACCTTCAGAAGAA  849

seq1  GTAG-AGTG-AGAATTCCAGTACAACTTCCAACTGCTT-AAGCC-TATAC  894
      |||| |||| ||||||||||||||  |||||||||||| ||||| |||||
seq2  GTAGAAGTGAAGAATTCCAGTACACTTTCCAACTGCTTAAAGCCTTATAC  899

seq1  TAATTT-CTCAG-CTACAAACATGAACTTTTGT-AGTA--GTTTCTCCAG  939
      |||||| ||||| |||||||||||||||||||| ||||   |||||||||
seq2  TAATTTCCTCAGCCTACAAACATGAACTTTTGTAAGTAAGTTTTCTCCAG  949

seq1  TAACTCCAATTCAATAAAAGGTATG-CACTG-AATCCCTATGC  980
      ||||||| ||||||||||    ||| ||||| ||| |||||||
seq2  TAACTCC-ATTCAATAAA---GATGCCACTGAAATTCCTATGC  988

seq1: chr1_49572702_49573721
seq2: B6Ng01-002M23.g_156_1174 (reverse)

seq1  ATGGTCACTTGATCTTTGACAAGGGAGCTAAAACTATCCCAATTTTTAAG  50
      |||||||||||||||| |  ||| ||||| |||||||||||| |||||||
seq2  ATGGTCACTTGATCTTGGCAAAGAGAGCT-AAACTATCCCAAATTTTAAG  49

seq1  TTACAATATTTGCTGT-CCAGTCTCTGTGTGCAGGGCTCAATTATAGTCC  99
      |||| ||| ||||||| |||||||   ||||||||||||||||||| |||
seq2  TTAC-ATA-TTGCTGTCCCAGTCTTCTTGTGCAGGGCTCAATTATAATCC  97

seq1  TGACTTGAACAATCTGTAAAGCTGTAACATGCTAACTAGCTGCTTTGAAT  149
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  TGACTTGAACAATCCGAAAAGCTGTAACATGCTAACTAGCTGCTTTGAAT  147

seq1  CTGTCCCAAATATGAACATCTGGAGAATCAGCTATTGGGTTAGCTGAAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCAAATATGAACATCTGGAGAATCAGCTATTGGGTTAGCTGAAGT  197

seq1  TGGATAAGGCAGGATGCTGGGATAAAGGTGTCTTAGCATCTCAATATTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGGCAGGATGCTGGGATAAAGGTGTCTTAGCATCTCAATATTCT  247

seq1  TTTCATTATCCTCAAGGTGAATCTTGTCAGAGCTGCTTTAACTG-AATTG  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCATTATCCTCAAGGTGAATCTTGTCAGAGCTGCTTTAACTGAAATTG  297

seq1  GTGCCTGCAAACATATAATCTTTTACAGGTAATATACATCTCTATACATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCAAACATATAATCTTTTACAGGTAATATACATCTCTATACATT  347

seq1  TCTATAGTAACATAAGCATGGAATATGCAGTGTCCACAGTCAGCTAAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTAACATAAGCATGGAATATGCAGTGTCCACAGTCAGCTAAATT  397

seq1  GTTTTGTTTTGTTTTGCTCTCTGTATGAGCAGGCAAGTCACCTATCTTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGCTCTCTGTATGAGCAGGCAAGTCACCTATCTTAC  447

seq1  TTTTTCAAGTTAGTTTAGATTATTTTATCAAACTGAAAGTATTTTTTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGTTAGTTTAGATTATTTTATCAAACTGAAAGTATTTTTTATC  497

seq1  CATTCCATTTTAAAGACGGCATGAGTCCTAACGATTCCATAGCCAGGATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATTTTAAAGACGGCATGAGTCCTAACGATTCCATAGCCAGGATT  547

seq1  TATTGGCTATGTATAGCTGAAGAGCTTGGTGGATGAATTTTCATTATCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTATGTATAGCTGAAGAGCTTGGTGGATGAATTTTCATTATCAG  597

seq1  CAAGGATTCAGAGCTATTTCCATGTAGAGGAAAAGCTCTTCTCCTTCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTCAGAGCTATTTCCATGTAGAGGAAAAGCTCTTCTCCTTCCTC  647

seq1  TCCTCCCCTCTCCTCATTGTCCTCATCACCATTGTTGTACTCCTCCTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCTCTCCTCATTGTCCTCATCACCATTGTTGTACTCCTCCTCCT  697

seq1  CCTTCTTCTTGATTTCTTTTTCCTGTCTGCAGCCAAGACTATGAGGGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTTGATTTCTTTTTCCTGTCTGCAGCCAAGACTATGAGGGGGC  747

seq1  ACCCACAGTCAAAACCGAGTTTTATCAATTTGAATGGAATTGATAGCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTCAAAACCGAGTTTTATCAATTTGAATGGAATTGATAGCTTT  797

seq1  TCTTCTCCTGTCGAAACAAAGGAAAACTGCTACGCTCTCCGGTCGAGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTGTCGAAACAAAGGAAAACTGCTACGCTCTCCGGTCGAGTCA  847

seq1  GCTGGACAAGCCGAAAGGCTTAAAAGTTACTCATGAGGCAAAAGAGTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACAAGCCGAAAGGCTTAAAAGTTACTCATGAGGCAAAAGAGTTTC  897

seq1  AAGTAAGCTCTCCTCCTGGAGTCTAGCATTCTCTACCCATACATTAATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCTCTCCTCCTGGAGTCTAGCATTCTCTACCCATACATTAATTT  947

seq1  TCCATTCCCGCGTTAGTCTAGTGTATGGATCCACGTGCTCTCTTTCAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCCGCGTTAGTCTAGTGTATGGATCCACGTGCTCTCTTTCAGTA  997

seq1  TTTTCCTATTATAAGTGCTTTA  1020
      ||||||||||||||||||||||
seq2  TTTTCCTATTATAAGTGCTTTA  1019