BAC Information

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BAC

Clone NameB6Ng01-003H03
Chromosome1 (Build37)
Map Location 183,780,129 - 183,959,732
singlet/doubletdoublet
Overlap geneEG433384, Enah
Upstream geneBC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H03.bB6Ng01-003H03.g
ACCDH841155DH841156
length1,0141,062
definitionDH841155|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H03, 5' end.DH841156|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(183,958,718 - 183,959,732)(183,780,129 - 183,781,200)
sequence
gaattccctatgaaactcagcgatctaacccctgcctcccgagtgctggg
attaaaggctggttagggtcctccttcagatccttcattcctccctccat
gaatatgactctgagagggttctcaagctgtgtacacgacccaagtctgg
tgggttgaagcagtccgagtgtgcttcatcccgctggccagcgtcaggat
cagccatggttttcttaggtttcccatcgcctggttcactgcggggagag
cccagcccttctctggtagccaaggaagagtgaggcaggagttgcttggc
agctgtggtcacaactctgctaacctgacagaaataatccaatgcaaatt
cattaattaacggattaattaaaaacaaacaaatgagagcccccaaccat
atgacactagtcattcctgcggctcctgaggtctcagcacaagagaaaga
atctccttagttaaagctggccttttccactgaaacttcttttttaaatg
agtgattcatataggcttcttattgtctgccaaaatcacaatacagtcaa
catttccagagcagcagagtttggggctcctccagggaagaaacccaagt
ctccttggaagccagatttatcaggatatgccctgtcattgactcccagg
actcctcatagaccgctttcgcctcccatcagctctgagtcttccttctt
tcccacctaggcgtctgtttctattgagatcttcggctctccgtttcttg
gagctcgtgtaacctagcgtcagtgccgtgccgtcactccactggactgc
agcctagtacacgtggaggccgaggtctgaaccgtggctcagagatctcc
aggaatatctgcgtccttccttccttcttcccaagtctgagtgaactgga
ttccttgaactcttcctgagggatgacttcagtgtctgtcagaaggaaaa
gagcatggctctgcgctactcatgcttgccttccttagccacgacgcaca
agcaacagactcac
gaattctctatgtagactaggctggccttgaactcacagagatccaccgg
cctctgcttcccaaatgctgggattaaagttgaatagtgtaattttttaa
agatttatttatttaatttatgtatatgagtacactgtagctgtagagat
ggttgtgagccttcgtgtggttgttgggtattgaatttaagacctctgat
cactccattcagccttgctcgcttagtcccaagattgatttattattata
aataactacaaccttgctgtcttcagacacaccagaagagggcgtcagac
ctcattacaggtggttgtgatttgaactgggatttgaattcaggagctct
ggaagagcagtcagtgcttttacctgctgagccatctcaccagcccaata
attttctaaaagtaaacagataatgatagattcttcaaaaggataccccc
agcgagctacttcctccaaccaggctctgcctgttaatagcccagaaagt
tctaggctcattaaggctgcgttctcctcacatatagaggaatgggtcag
tagcagtgctgatcttattccctcctaatagcactaccaactgggagcca
aatctgtaacacatgggattcccctggggaaagactccattgccaaacca
gagcaaagagtagcaatgactggaagtaatttcctctccattcctggacg
ctatgactgcagagccggagggaccgtgattgatgatgctgcaagatgaa
aagaacgtgcactcaggaggcagggacacttgaaccctctgcttccattg
ggcacctcaagcaagatacttcacatgtatttcagagtatttccttatca
attaatagttctcactaaagatctttaatgctctcattttgtaaacacag
atggaatagtgaaaaaacttctaaactcgttttcaaatagaaaaaagtta
aacaaacatcatgcctggctatggtgatgtgcgttctcaatcagtgtacg
ctagtgatgaggcaataagcttggcttgggtgcacgcatgattaaacact
attgaggcgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183958718_183959732
seq2: B6Ng01-003H03.b_45_1058 (reverse)

seq1  GTGAGGCTGTTGCTTGTGCGTCGTGGCTAAGGAAGGCAAGCATGAGTAGG  50
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGAGTCTGTTGCTTGTGCGTCGTGGCTAAGGAAGGCAAGCATGAGTA-G  49

seq1  CGCAGAGCCATGCTCTTTTCCCTTCTGACAGACACTGATGTCATCCCTCA  100
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CGCAGAGCCATGCTCTTTT-CCTTCTGACAGACACTGAAGTCATCCCTCA  98

seq1  -GAAGAGTTCAAGGAATCCAGTTCACTCAGACTTGGGAAGAAGGAAGGAA  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGTTCAAGGAATCCAGTTCACTCAGACTTGGGAAGAAGGAAGGAA  148

seq1  GGAAGCAGATATTCCTGGAGATCTCTGAGCCACGGTTCAGACCTCGGCCT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCAGATATTCCTGGAGATCTCTGAGCCACGGTTCAGACCTCGGCCT  198

seq1  CCACGTGTACTAGGCTGCAGTCCAGTGGAGTGACGGCACGGCACTGACGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGTACTAGGCTGCAGTCCAGTGGAGTGACGGCACGGCACTGACGC  248

seq1  TAGGTTACACGAGCTCCAAGAAACGGAGAGCCGAAGATCTCAATAGAAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTACACGAGCTCCAAGAAACGGAGAGCCGAAGATCTCAATAGAAAC  298

seq1  AGACGCCTAGGTGGGAAAGAAGGAAGACTCAGAGCTGATGGGAGGGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACGCCTAGGTGGGAAAGAAGGAAGACTCAGAGCTGATGGGAGGCGAAA  348

seq1  GCGGTCTATGAGGAGTCCTGGGAGTCAATGACAGGGCATATCCTGATAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCTATGAGGAGTCCTGGGAGTCAATGACAGGGCATATCCTGATAAA  398

seq1  TCTGGCTTCCAAGGAGACTTGGGTTTCTTCCCTGGAGGAGCCCCAAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCCAAGGAGACTTGGGTTTCTTCCCTGGAGGAGCCCCAAACTC  448

seq1  TGCTGCTCTGGAAATGTTGACTGTATTGTGATTTTGGCAGACAATAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCTGGAAATGTTGACTGTATTGTGATTTTGGCAGACAATAAGAA  498

seq1  GCCTATATGAATCACTCATTTAAAAAAGAAGTTTCAGTGGAAAAGGCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATATGAATCACTCATTTAAAAAAGAAGTTTCAGTGGAAAAGGCCAG  548

seq1  CTTTAACTAAGGAGATTCTTTCTCTTGTGCTGAGACCTCAGGAGCCGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTAAGGAGATTCTTTCTCTTGTGCTGAGACCTCAGGAGCCGCAG  598

seq1  GAATGACTAGTGTCATATGGTTGGGGGCTCTCATTTGTTTGTTTTTAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTAGTGTCATATGGTTGGGGGCTCTCATTTGTTTGTTTTTAATT  648

seq1  AATCCGTTAATTAATGAATTTGCATTGGATTATTTCTGTCAGGTTAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGTTAATTAATGAATTTGCATTGGATTATTTCTGTCAGGTTAGCAG  698

seq1  AGTTGTGACCACAGCTGCCAAGCAACTCCTGCCTCACTCTTCCTTGGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGACCACAGCTGCCAAGCAACTCCTGCCTCACTCTTCCTTGGCTA  748

seq1  CCAGAGAAGGGCTGGGCTCTCCCCGCAGTGAACCAGGCGATGGGAAACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAGGGCTGGGCTCTCCCCGCAGTGAACCAGGCGATGGGAAACCT  798

seq1  AAGAAAACCATGGCTGATCCTGACGCTGGCCAGCGGGATGAAGCACACTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCATGGCTGATCCTGACGCTGGCCAGCGGGATGAAGCACACTC  848

seq1  GGACTGCTTCAACCCACCAGACTTGGGTCGTGTACACAGCTTGAGAACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTCAACCCACCAGACTTGGGTCGTGTACACAGCTTGAGAACCC  898

seq1  TCTCAGAGTCATATTCATGGAGGGAGGAATGAAGGATCTGAAGGAGGACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGTCATATTCATGGAGGGAGGAATGAAGGATCTGAAGGAGGACC  948

seq1  CTAACCAGCCTTTAATCCCAGCACTCGGGAGGCAGGGGTTAGATCGCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGCCTTTAATCCCAGCACTCGGGAGGCAGGGGTTAGATCGCTGA  998

seq1  GTTTCATAGGGAATTC  1015
      ||||||||||||||||
seq2  GTTTCATAGGGAATTC  1014

seq1: chr1_183780129_183781200
seq2: B6Ng01-003H03.g_65_1126

seq1  GAATTCTCTATGTAGACTAGGCTGGCCTTGAACTCACAGAGATCCACCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAGACTAGGCTGGCCTTGAACTCACAGAGATCCACCGG  50

seq1  CCTCTGCTTCCCAAATGCTGGGATTAAAGTTGAATAGTGTAATTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCCAAATGCTGGGATTAAAGTTGAATAGTGTAATTTTTTAA  100

seq1  AGATTTATTTATTTAATTTATGTATATGAGTACACTGTAGCTGTAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTATTTAATTTATGTATATGAGTACACTGTAGCTGTAGAGAT  150

seq1  GGTTGTGAGCCTTCGTGTGGTTGTTGGGTATTGAATTTAAGACCTCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCTTCGTGTGGTTGTTGGGTATTGAATTTAAGACCTCTGAT  200

seq1  CACTCCATTCAGCCTTGCTCGCTTAGTCCCAAGATTGATTTATTATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATTCAGCCTTGCTCGCTTAGTCCCAAGATTGATTTATTATTATA  250

seq1  AATAACTACAACCTTGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTACAACCTTGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGAC  300

seq1  CTCATTACAGGTGGTTGTGATTTGAACTGGGATTTGAATTCAGGAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACAGGTGGTTGTGATTTGAACTGGGATTTGAATTCAGGAGCTCT  350

seq1  GGAAGAGCAGTCAGTGCTTTTACCTGCTGAGCCATCTCACCAGCCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGTCAGTGCTTTTACCTGCTGAGCCATCTCACCAGCCCAATA  400

seq1  ATTTTCTAAAAGTAAACAGATAATGATAGATTCTTCAAAAGGATACCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAAAAGTAAACAGATAATGATAGATTCTTCAAAAGGATACCCCC  450

seq1  AGCGAGCTACTTCCTCCAACCAGGCTCTGCCTGTTAATAGCCCAGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCTACTTCCTCCAACCAGGCTCTGCCTGTTAATAGCCCAGAAAGT  500

seq1  TCTAGGCTCATTAAGGCTGCGTTCTCCTCACATATAGAGGAATGGGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTCATTAAGGCTGCGTTCTCCTCACATATAGAGGAATGGGTCAG  550

seq1  TAGCAGTGCTGATCTTATTCCCTCCTAATAGCACTACCAACTGGGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGCTGATCTTATTCCCTCCTAATAGCACTACCAACTGGGAGCCA  600

seq1  AAGCTGTAACACATGGGATTCCCCTGGGGAAAGACTCCATTGCCAAACCA  650
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTAACACATGGGATTCCCCTGGGGAAAGACTCCATTGCCAAACCA  650

seq1  GAGCAAAGAGTAGCAATGACTGGAAGTAATTTCCTCTCCATTCCTGGACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGAGTAGCAATGACTGGAAGTAATTTCCTCTCCATTCCTGGACG  700

seq1  CTATGACTGCAGAGCCGGAGGGACCATGATTGATGAAGCTGCAGGATGAA  750
      ||||||||||||||||||||||||| |||||||||| |||||| ||||||
seq2  CTATGACTGCAGAGCCGGAGGGACCGTGATTGATGATGCTGCAAGATGAA  750

seq1  AAGAAGGTGCACTCAGGAGGCAGGGACACTTGAACCCTCTGCTTCCATTG  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGTGCACTCAGGAGGCAGGGACACTTGAACCCTCTGCTTCCATTG  800

seq1  GGCACCTCAAGCAAGATACTTCAAATGTATTTCAGAGTATTTCCTTATCA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCACCTCAAGCAAGATACTTCACATGTATTTCAGAGTATTTCCTTATCA  850

seq1  ATTAATAGTTCTCACTAAAAGATCTTTAATGCACTCATTTTGTAAACACA  900
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  ATTAATAGTTCTCACT-AAAGATCTTTAATGCTCTCATTTTGTAAACACA  899

seq1  AATGGAATAGTGAAAAAAACTTCGAAAACACATTTCAAAAAAAAAAAAGT  950
       ||||||||||| |||||||||| |||     ||||||| | ||||||||
seq2  GATGGAATAGTG-AAAAAACTTCTAAACTCGTTTTCAAATAGAAAAAAGT  948

seq1  TAAAACAAACATCAGGCCGGGCTATGGTGGTTGTGCGTTTTTAAATCGGG  1000
      | |||||||||||| ||| ||||||||| | |||||| || | ||||  |
seq2  T-AAACAAACATCATGCCTGGCTATGGT-GATGTGCG-TTCTCAATC-AG  994

seq1  TGTAGGCTAGTGAGGGGGAAATAAGCGTGTGCTTGTGTGCACGCATGATT  1050
      |||| |||||||| | || ||||||| || ||||| ||||||||||||||
seq2  TGTACGCTAGTGATGAGGCAATAAGCTTG-GCTTGGGTGCACGCATGATT  1043

seq1  AAACACACACTTGAAGGCGTAC  1072
      ||  ||||  ||| ||||||||
seq2  AA--ACACTATTG-AGGCGTAC  1062