BAC Information

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BAC

Clone NameB6Ng01-003P21
Chromosome1 (Build37)
Map Location 154,010,329 - 154,116,880
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
Downstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003P21.bB6Ng01-003P21.g
ACCDH841528DH841529
length1,1211,102
definitionDH841528|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P21, 5' end.DH841529|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,115,737 - 154,116,880)(154,010,329 - 154,011,447)
sequence
gaattcagtggttgcacttgcatgggaatggacagctatttaaggaagag
agttagccagtgtctgattcctaccaagtctgtgtcttctaggaagttct
cctagattactcaggtgtatatttttagtgggaactcaatctataaaaat
ccaagttcatcaaattgataaattgtggagacgaacttttataaaatttt
tatttaattaatatatatgtgtgagtgccagcgtgtctgtctgtctacca
cactcatgcagtgttggcagaggccagatgagagggttggatcccctgga
actggtgctatcaatggttatgggttatcatgtgtgtgctgggaatcgaa
cccaggtcctctggaagatcagtcagtgctcttacctgctgagccatctc
tccagccctgaggtgggttctgtttaactacaaaaggatcttcttaccaa
cttcagggtacccttataatagctaatcatcctcctagtgactatgatat
catatttatggatttcttttttcagacctactgatcttagctacaatgta
ctgccatggtgactaaaagcccaggcttcgactccagccaagagcaagct
tgaaaaatgggctctgttatctatttgcaatgtgtttggattagttctga
tcttctcaaaaatacagaaagtttcatcaaggactaagcaacacacctct
gataggtaacacccagtgagacttgatgtgaatatcaattgatgagcggt
tcctactcttgtgttattagagtgttcatgtgaaggcgaagggtgtctca
cccacattcagagacaccttgttgtttactctgtttaatgccatggtcta
ttttcattgctgtgtggcccctccctttatctatggcttctgtgtcttct
ggaccttctctaaccccctgcctcccaagatggtaaataaatggttaagt
accagatcacactggctctagggagattctgaaactaaaaagaaataccc
taaaatgatgtttctcaaatagtctgtgaactctgtcaaatctgctccta
ttgaaaatgcgatgttagtgataattctaatggataaaatgccgatttca
gcaccgatggagtcaggggag
gaattctatctgcttgtccacaggagacattcatcacttctcgctccctt
ttattccagaaatttactttgagtcttaaatttattgtaagaatgaattt
ttaatgcattttgtgacttacataagatctagcccttgttgactgtccta
attactccaagaagctctcagaatgcagccaactttcctgaagtgaactt
gcatcaggacagtatttgcttctgcgtgtattgcctattttacctgcatg
gagtctggtaactctggtctacgttgttaaccctggatgcttttaggtga
ctgcttttatattatactcagcttttcaataagataagtaatctagataa
ctttgcgtgttactccctaaaatgggacgtctaggacagcaaataacttc
accatgtccacacagtctcaccaagctgagcgttcaagtagtaatgtata
ttttgcttcctgaaattgctctacattgtcattttgattattgtttaaaa
aaatcaggggaaagaaacccagatttcctgtcctagctaccatcatccat
gagtgttaaacattactcagacagagaaaatatattgtaactttatattt
aaaagttgttgacacataatgaataaaatctcaagtgttgtctaatttat
acatgaagttttattgaaacattattatttttttaaactgacactcattt
tttaaatgtgtggtctatgtactgttgctttgtgctattgagcaggagct
gaatagctgtcatgacgcctgtgtggccacagaatcgacaatactcaccg
gtacttccggttaccaagaggtgttgcctggttgatttagcttctataag
caagtcaaattatttccacatcatttccatatagttctagatcctggaaa
ctttgtctctctgttgagtcacatggagaaacagagaaagggatagctat
aaaatgcagacttccaagtagcaatgtgctgtgacagattctttccctgc
acaggactagctatctagcgtttctcttcccttccagagtgcatttcatt
ctgaaacagctctctgtttcatttaactatggttcaggctggacagtgga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154115737_154116880
seq2: B6Ng01-003P21.b_48_1168 (reverse)

seq1  CTCCCCTTGACTCCATCTGGTGCCCTGAAATCTGCATTTTTTTAATTCCA  50
      |||||| |||||||||| ||||  |||||||| |||||||      ||||
seq2  CTCCCC-TGACTCCATC-GGTG--CTGAAATCGGCATTTT-----ATCCA  41

seq1  TTAATGTATTTATTCACTTTACATCTGCATTTTCAAATAGGAGCAGATTT  100
      |||  | |||   |||| | ||||| |||||||| |||||||||||| ||
seq2  TTA--GAATT--ATCAC-TAACATC-GCATTTTC-AATAGGAGCAGA-TT  83

seq1  TGACAGAGGTTCACAGACTATTTGAGAAACATCATTTTAGGGTATTTCTT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGA-GTTCACAGACTATTTGAGAAACATCATTTTAGGGTATTTCTT  132

seq1  TTTAGTTTCAGAATCTTCCCTAGAGCCAGTGTGATCTGGTACTTAACCCA  200
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TTTAGTTTCAGAATC-TCCCTAGAGCCAGTGTGATCTGGTACTTAA-CCA  180

seq1  TTTATTTACCATCCTTGGGAGGCAGGGGGTTAGAGAAAGGTCCAGAAGAC  250
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TTTATTTACCAT-CTTGGGAGGCAGGGGGTTAGAG-AAGGTCCAGAAGAC  228

seq1  AACAGAAGCCATAGATAAAGGGAGGGGCCACACAGCAATGAAAATAGACC  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACAGAAGCCATAGATAAAGGGAGGGGCCACACAGCAATGAAAATAGACC  277

seq1  ATGGCATTAAACAGAGTAAACAACAAGGTGTCTCTGAATGTGGGTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTAAACAGAGTAAACAACAAGGTGTCTCTGAATGTGGGTGAGAC  327

seq1  ACCCTTCGCCTTCACATGAACACTCTAATAACACAAGAGTAGGAACCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCGCCTTCACATGAACACTCTAATAACACAAGAGTAGGAACCGCT  377

seq1  CATCAATTGATATTCACATCAAGTCTCACTGGGTGTTACCTATCAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTGATATTCACATCAAGTCTCACTGGGTGTTACCTATCAGAGGT  427

seq1  GTGTTGCTTAGTCCTTGATGAAACTTTCTGTATTTTTGAGAAGATCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTTAGTCCTTGATGAAACTTTCTGTATTTTTGAGAAGATCAGAA  477

seq1  CTAATCCAAACACATTGCAAATAGATAACAGAGCCCATTTTTCAAGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCAAACACATTGCAAATAGATAACAGAGCCCATTTTTCAAGCTTG  527

seq1  CTCTTGGCTGGAGTCGAAGCCTGGGCTTTTAGTCACCATGGCAGTACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGCTGGAGTCGAAGCCTGGGCTTTTAGTCACCATGGCAGTACATT  577

seq1  GTAGCTAAGATCAGTAGGTCTGAAAAAAGAAATCCATAAATATGATATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAAGATCAGTAGGTCTGAAAAAAGAAATCCATAAATATGATATCA  627

seq1  TAGTCACTAGGAGGATGATTAGCTATTATAAGGGTACCCTGAAGTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTAGGAGGATGATTAGCTATTATAAGGGTACCCTGAAGTTGGTA  677

seq1  AGAAGATCCTTTTGTAGTTAAACAGAACCCACCTCAGGGCTGGAGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCCTTTTGTAGTTAAACAGAACCCACCTCAGGGCTGGAGAGATG  727

seq1  GCTCAGCAGGTAAGAGCACTGACTGATCTTCCAGAGGACCTGGGTTCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGGTAAGAGCACTGACTGATCTTCCAGAGGACCTGGGTTCGAT  777

seq1  TCCCAGCACACACATGATAACCCATAACCATTGATAGCACCAGTTCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACACACATGATAACCCATAACCATTGATAGCACCAGTTCCAGG  827

seq1  GGATCCAACCCTCTCATCTGGCCTCTGCCAACACTGCATGAGTGTGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAACCCTCTCATCTGGCCTCTGCCAACACTGCATGAGTGTGGTAG  877

seq1  ACAGACAGACACGCTGGCACTCACACATATATATTAATTAAATAAAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACACGCTGGCACTCACACATATATATTAATTAAATAAAAATT  927

seq1  TTATAAAAGTTCGTCTCCACAATTTATCAATTTGATGAACTTGGATTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGTTCGTCTCCACAATTTATCAATTTGATGAACTTGGATTTTT  977

seq1  ATAGATTGAGTTCCCACTAAAAATATACACCTGAGTAATCTAGGAGAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGAGTTCCCACTAAAAATATACACCTGAGTAATCTAGGAGAACT  1027

seq1  TCCTAGAAGACACAGACTTGGTAGGAATCAGACACTGGCTAACTCTCTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAAGACACAGACTTGGTAGGAATCAGACACTGGCTAACTCTCTTC  1077

seq1  CTTAAATAGCTGTCCATTCCCATGCAAGTGCAACCACTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAGCTGTCCATTCCCATGCAAGTGCAACCACTGAATTC  1121

seq1: chr1_154010329_154011447
seq2: B6Ng01-003P21.g_68_1169

seq1  GAATTCTATCTGCTTGTCCACAGGAGACATTCATCACTTCTCGCTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTGCTTGTCCACAGGAGACATTCATCACTTCTCGCTCCCTT  50

seq1  TTATTCCAGAAATTTACTTTGAGTCTTAAATTTATTGTAAGAATGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAGAAATTTACTTTGAGTCTTAAATTTATTGTAAGAATGAATTT  100

seq1  TTAATGCATTTTGTGACTTACATAAGATCTAGCCCTTGTTGACTGTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCATTTTGTGACTTACATAAGATCTAGCCCTTGTTGACTGTCCTA  150

seq1  ATTACTCCAAGAAGCTCTCAGAATGCAGCCAACTTTCCTGAAGTGAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCAAGAAGCTCTCAGAATGCAGCCAACTTTCCTGAAGTGAACTT  200

seq1  GCATCAGGACAGTATTTGCTTCTGCGTGTATTGCCTATTTTACCTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGACAGTATTTGCTTCTGCGTGTATTGCCTATTTTACCTGCATG  250

seq1  GAGTCTGGTAACTCTGGTCTACGTTGTTAACCCTGGATGCTTTTAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGGTAACTCTGGTCTACGTTGTTAACCCTGGATGCTTTTAGGTGA  300

seq1  CTGCTTTTATATTATACTCAGCTTTTCAATAAGATAAGTAATCTAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTATATTATACTCAGCTTTTCAATAAGATAAGTAATCTAGATAA  350

seq1  CTTTGCGTGTTACTCCCTAAAATGGGACGTCTAGGACAGCAAATAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCGTGTTACTCCCTAAAATGGGACGTCTAGGACAGCAAATAACTTC  400

seq1  ACCATGTCCACACAGTCTCACCAAGCTGAGCGTTCAAGTAGTAATGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCCACACAGTCTCACCAAGCTGAGCGTTCAAGTAGTAATGTATA  450

seq1  TTTTGCTTCCTGAAATTGCTCTACATTGTCATTTTGATTATTGTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCCTGAAATTGCTCTACATTGTCATTTTGATTATTGTTTAAAA  500

seq1  AAATCAGGGGAAAGAAACCCAGATTTCCTGTCCTAGCTACCATCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGGGAAAGAAACCCAGATTTCCTGTCCTAGCTACCATCATCCAT  550

seq1  GAGTGTTAAACATTACTCAGACAGAGAAAATATATTGTAACTTTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAAACATTACTCAGACAGAGAAAATATATTGTAACTTTATATTT  600

seq1  AAAAGTTGTTGACACATAATGAATAAAATCTCAAGTGTTGTCTAATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTTGACACATAATGAATAAAATCTCAAGTGTTGTCTAATTTAT  650

seq1  ACATGAAGTTTTATTGAAACATTATTATTTTTTTAAACTGACACTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGTTTTATTGAAACATTATTATTTTTTTAAACTGACACTCATTT  700

seq1  TTTAAATGTGTGGTCTATGTACTGTTGCTTTGTGCTATTGAGCAGGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTGTGGTCTATGTACTGTTGCTTTGTGCTATTGAGCAGGAGCT  750

seq1  GAATAGCTGTCATGACGCCTGTGTGGCCACAGAATCGACAATACTCACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCTGTCATGACGCCTGTGTGGCCACAGAATCGACAATACTCACCG  800

seq1  GTACTTCCGGTTACCAAGAGGTGTTGCCTGGTTGATTTAGCTTCTATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCCGGTTACCAAGAGGTGTTGCCTGGTTGATTTAGCTTCTATAAG  850

seq1  CAAGTCAAATTATTTCCACATCATTTCCATATAGTTCTAGATCCTGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAAATTATTTCCACATCATTTCCATATAGTTCTAGATCCTGGAAA  900

seq1  CTTTGTCTCTCTGTTGAGTCACATGGAGAAACAGAAGAAAGGGATAGCTA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTGTCTCTCTGTTGAGTCACATGGAGAAACAG-AGAAAGGGATAGCTA  949

seq1  TAAAATGCAGACTTCCAAGTAGCAATGTGGCTGTTGGACAAGGATTCTTT  1000
      |||||||||||||||||||||||||||| |||||  ||||  ||||||||
seq2  TAAAATGCAGACTTCCAAGTAGCAATGT-GCTGT--GACA--GATTCTTT  994

seq1  CCCTGCACAGGACTTAGCTATCTTAGCGTTTCTCTTCCCTTCCAGAGTGC  1050
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  CCCTGCACAGGAC-TAGCTATC-TAGCGTTTCTCTTCCCTTCCAGAGTGC  1042

seq1  ATTTCATTTCTGAAACCAAGCTCCTCTGTTTCATTTACCTATGTTTCCAG  1100
      |||||| |||||||||  |||| |||||||||||||| ||||| || |||
seq2  ATTTCA-TTCTGAAAC--AGCT-CTCTGTTTCATTTAACTATGGTT-CAG  1087

seq1  GGGCCTGGACAGTGAGAGA  1119
      |   |||||||||| ||||
seq2  G---CTGGACAGTG-GAGA  1102