BAC Information

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BAC

Clone NameB6Ng01-004H19
Chromosome1 (Build37)
Map Location 115,789,247 - 115,790,331
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H19.bB6Ng01-004H19.g
ACCDH841884DH841885
length1,2451,153
definitionDH841884|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H19, 5' end.DH841885|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttcactctgtatcccattttttttcatttttattaaata
ttttctttatttacatttcaaatggtatcccctttcctcatttcccctcc
aaatcacctcctatcctatcaccatcccccagcccactaacctaccctct
caatctcccctgtcctggtattcccctacactggggcatcaagttttcac
aagacctctccactcattgatgtcccacaaggccatcctttgctacatat
gcagctggagtcatggatccttccatgtgtactcattggttgttggttta
gtccctgggagctccggggtttctagttggttcatattgttgttcctcct
atggagctgcaaaacccttcagctcctttgtttttttctctggctcctcc
attggagaccctgtgctcagtccaatgaatggatgacccacctacctatg
gccacctgatctttgacaaaagagataaaaccatcctgtggattaaagac
agcaatttcaacaaatggtgttagttcaactggcaactgcatgtggaagc
atgtggaagaactcaaatcaatctattcttatctctttgtacaaagctca
agttcaagtggatcaaggacctccacataaaaacacttctctatttgtca
gtcactggcagatcctctcaggagggagctttatcaggctcctgtcagca
agcacttgttggcatccaaaatagtgtcagggtttgagaactctatatgg
gatggatccccaggtgaggtagtctctggttgacctttcttcagattctg
ctccatattttttctctgtaggttctcccatgggtattttgatctcactt
ctaagaaagggctaaagaataaacacattgatcttccttcatcttgagct
tcatgtagtctgtgaatagtatcgtgggtattccaaacttctgggctact
attcatttatcagtgagtgcatgccatgtgtgttcttttgtgattaggtt
acctcactcagatgatattttctagttccatccatttgcctagaatttaa
taaatttccatatttttaatagctgagtagtactctttgttaaatttcac
atttcctggtttcattctctgttggaggacatcagagtctttcagcttct
agatataaataaggctgtcattgacatatgacagtgttcctatattactg
ttggagcacctctcttaggtatattgacccagtgaagaggtggat
gaattctttagatttacaattcaagggtacaatccattaaggtggggaag
acaaggtggtagaaatagaaagcatctagtcacatgtaactgtcagaaat
aagagagaaggaaatggggcttgttcaaagccaacctctagcaacccatt
ttaaagagctttcaattcctaacactttgcaattttctcaaatagtgaca
ccagctagagactgtttagagactaaagttctaaaacataggagctcatg
agggcatttcacattcaccccacaattgtggccataatgggagcagttgc
cactcctacatgttctctgcccctgcactcactgtagactccaagctcac
atttgccccatgggagaatagacctctaaatggtaagttgaaaggagcat
atttgttttgtaagttaattaccattgacaattcattatagtaatgtcaa
catgcaaagtaaggaattcagagctaggctgatggttttaattagaaatg
gcccccatagacttatatatttaaaaccatggttcccaactggtggaact
acatggaaagatttggaattttggtgagggaagatttgcaagaggaagta
tgtcaacaggggcaagcttttaggtaaatatattggcactgtttctgttt
ttcgatttttgctttctgagtgtaggcaaatgtgaacagccaagttcctg
cttctgcagccatgcctttgttgtcatgtgtttcctgttatgatgaaatc
tattcctgtggacccataagcctacaacttctttattttcctcatgatta
ttctttccataacattttttgttataccaacagaaaagaaatcaaatatt
caatgaatgttttcacaattcccactgcaacacccacaaaaggacaagaa
tgtatggtgtgcagtctctgtatcacataatctccagaattttgggcaac
tcagattatagtgctatttaaactagaaatatctggatgattatctggga
aaaacaaaacaaaacaaaacaacaacaagagaaaagaaaagcctctccat
gagaactttaagaacagagaaactcagtctgaagtaacaataagaagcac
cagtggtattccatgatgccgagatgggagaccccaactcaagaactcta
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115789247_115790331
seq2: B6Ng01-004H19.g_68_1220

seq1  GAATTCTTTAGATTTACAATTCAAGGGTACAATCCATTAAGGTGGGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGATTTACAATTCAAGGGTACAATCCATTAAGGTGGGGAAG  50

seq1  ACAAGGTGGTAGAAATAGAAAGCATCTAGTCACATGTAACTGTCAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGGTAGAAATAGAAAGCATCTAGTCACATGTAACTGTCAGAAAT  100

seq1  AAGAGAGAAGGAAATGGGGCTTGTTCAAAGCCAACCTCTAGCAACCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAGGAAATGGGGCTTGTTCAAAGCCAACCTCTAGCAACCCATT  150

seq1  TTAAAGAGCTTTCAATTCCTAACACTTTGCAATTTTCTCAAATAGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGCTTTCAATTCCTAACACTTTGCAATTTTCTCAAATAGTGACA  200

seq1  CCAGCTAGAGACTGTTTAGAGACTAAAGTTCTAAAACATAGGAGCTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGAGACTGTTTAGAGACTAAAGTTCTAAAACATAGGAGCTCATG  250

seq1  AGGGCATTTCACATTCACCCCACAATTGTGGCCATAATGGGAGCAGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTCACATTCACCCCACAATTGTGGCCATAATGGGAGCAGTTGC  300

seq1  CACTCCTACATGTTCTCTGCCCCTGCACTCACTGTAGACTCCAAGCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTACATGTTCTCTGCCCCTGCACTCACTGTAGACTCCAAGCTCAC  350

seq1  ATTTGCCCCATGGGAGAATAGACCTCTAAATGGTAAGTTGAAAGGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCCCATGGGAGAATAGACCTCTAAATGGTAAGTTGAAAGGAGCAT  400

seq1  ATTTGTTTTGTAAGTTAATTACCATTGACAATTCATTATAGTAATGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTGTAAGTTAATTACCATTGACAATTCATTATAGTAATGTCAA  450

seq1  CATGCAAAGTAAGGAATTCAGAGCTAGGCTGATGGTTTTAATTAGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAGTAAGGAATTCAGAGCTAGGCTGATGGTTTTAATTAGAAATG  500

seq1  GCCCCCATAGACTTATATATTTAAAACCATGGTTCCCAACTGGTGGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCATAGACTTATATATTTAAAACCATGGTTCCCAACTGGTGGAACT  550

seq1  ACATGGAAAGATTTGGAATTTTGGTGAGGGAAGATTTGCAAGAGGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAAGATTTGGAATTTTGGTGAGGGAAGATTTGCAAGAGGAAGTA  600

seq1  TGTCAACAGGGGCAAGCTTTTAGGTAAATATATTGGCACTGTTTCTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAGGGGCAAGCTTTTAGGTAAATATATTGGCACTGTTTCTGTTT  650

seq1  TTCGATTTTTGCTTTCTGAGTGTAGGCAAATGTGAACAGCCAAGTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTTTTGCTTTCTGAGTGTAGGCAAATGTGAACAGCCAAGTTCCTG  700

seq1  CTTCTGCAGCCATGCCTTTGTTGTCATGTGTTTCCTGTTATGATGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAGCCATGCCTTTGTTGTCATGTGTTTCCTGTTATGATGAAATC  750

seq1  TATTCCTGTGGACCCATAAGCCTACAACTTCTTTATTTTCCTCATGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGTGGACCCATAAGCCTACAACTTCTTTATTTTCCTCATGATTA  800

seq1  TTCTTTCCATAACATTTTTTGTTATACCAACAGAAAAGAAATCAAATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCATAACATTTTTTGTTATACCAACAGAAAAGAAATCAAATATT  850

seq1  CAATGAATGTTTTCACAATTCCCACTGCAACACCCACAAAAGGACAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATGTTTTCACAATTCCCACTGCAACACCCACAAAAGGACAAGAA  900

seq1  TGTATGGTGTGCAGTCTCTGTATCACATAATCTCCAGAATTTTGGGCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTATGGTGTGCAGTCTCTGTATCACATAATCTCCAGAATTTTGGGC-AA  949

seq1  CTCAGATTATAGTGCTATTTAAACTAGAAATATCCTGGATGATTATCTGG  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAGATTATAGTGCTATTTAAACTAGAAATAT-CTGGATGATTATCTGG  998

seq1  GAAAAAACAAAAACAAAAACCAAAAACAAACAAACCAAAAAAAAAAAAAA  1050
      ||||||              ||     ||||||| ||||| || || || 
seq2  GAAAAA--------------CA-----AAACAAAACAAAACAACAACAAG  1029

seq1  AAAAAAAAAAACCTTCTCACATGAGAACTCTAAGA---------------  1085
      | |||| |||| | |||| |||||||||| |||||               
seq2  AGAAAAGAAAAGCCTCTC-CATGAGAACTTTAAGAACAGAGAAACTCAGT  1078

seq1  --------------------------------------------------  1085
                                                        
seq2  CTGAAGTAACAATAAGAAGCACCAGTGGTATTCCATGATGCCGAGATGGG  1128

seq1  -------------------------  1085
                               
seq2  AGACCCCAACTCAAGAACTCTAAGA  1153