BAC Information

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BAC

Clone NameB6Ng01-004J18
Chromosome1 (Build37)
Map Location 55,845,707 - 55,970,098
singlet/doubletdoublet
Overlap genenone
Upstream geneAnkrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream gene9130227L01Rik, Hsfy2, Satb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J18.bB6Ng01-004J18.g
ACCDH841970DH841971
length1,123952
definitionDH841970|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J18, 5' end.DH841971|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,968,946 - 55,970,098)(55,845,707 - 55,846,661)
sequence
gaattcatgtatcaaagttcagatttctactcattacttctcagccaata
gtgtggtaatgtatgcaaagctacattctcagggtatcatagtacatttc
tactttcaggtccaaattcacaacttgttatgccattatatgtgagcatt
atctttccagcaaatgaaggcattatgtgtccccaaatacatcttattca
aactgagaggagactttcttttcaagagttattatagtcccatcctatcg
taaagctctttcttacaaagagagttccagctaactcttctgttctatcc
acgtgttcgttttgtatacagcactacctattcccacaaaaaataaagtc
agaagtcagccaaaagcttgggacgagacagagaagtaaaaaaaaaaaaa
acaaaaaacaaaaaaaaacaatgctagagaattctttctcattactactg
cctaccaaatatttgaagtgactactagccttgtaataacgcaattttgt
gattatgcccatgcttttatgctatttttaggtgctgagagcaagcctgg
tccttttgcatactagggttacaactgtaccaccaaactatattcccaga
ccagttattttatttttctagccatgattttctatatttaaaattttcca
atttccaattctaataaatcagggtgggaagaaagaaagaaaaactatct
taaatgactccttgaagacagacactaatagtttcacaagaagtatcttg
gtcactaaacagaaacacagggcatctctgcttactagggacattgctca
tccttttcttacatgtgctttctatccatggccctgatctagaattattg
caagtgggcttcttaactcaagttaagttcctgatcatcatttcttggag
tgaagtcttttccacctttcttgagattcattaatttgctacagtcatct
ctccatgctctactgcttacccatacagtgtgatagatattactcatggg
gctgtgctagcataataattataataatcgcacacagactagtacaatgc
gagaaatatatatccaccagctataggtttgtagttgtctacatgtcata
gtactgttcatatggacctagca
gaattcccggggttccttaatctgctcaaccagatttttcagtttttctg
tctggtgacacagttcacttgccccacccatgggcagatctctaaagtcc
taaagaattctgtatgacaaacagaaccaaagaaacattttcccctccag
gcagctggtcacgtgaacagtaggatggtcacatgcacagtaggacagca
aggctctccctcctgtttgtacttgcttgctcaacaggaagtaatggcta
tttggtcttctcagccactcagtttcaccctgactaagtcctgcgcatcc
ttctccaccatggaaaacagtttggacaagaaaaatgagatttggaggcc
taaagagaaagccacaggctccctgttgaaggacttgattctggtgcgtg
cgttctgctgcaggtggaggtggaggtggagaaggaggaatttacaggag
gaccgccttgtgtgtcagctaacgaggctctcagtaaggaaacaatcagg
aagggggtgccacatttcatagttgtgagaagggttttccacaaaggatg
gctctgggccaccatgggaagaaatgaaaaccttgtttcctggaacatga
gagagatctgtttgctgtgtccagatggaagagccatttcttagtgatag
gtgtttgctagatgtcataacagtagaattgccttggctaattggaaaca
gcaagtctgacataagactgagagtccagcagacctatgaatttaacaag
gcatatctcactattgtctaagtacttttttatagagagccagtgtttta
tgcatgctcttgaagacctcagatgtgtaccagttatgccaggaccctgt
ggctctccccactttccaactggagacaactggatgtctatacatctgga
ccatgctcccaaagcttcttgcttatccttagaataacatggtttcaaat
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_55968946_55970098
seq2: B6Ng01-004J18.b_44_1166 (reverse)

seq1  TGCTAGCTCCATAATGAACAGTACTATTGACATGTAGACAAACTTACATA  50
      |||||| ||||| ||||||||||||| ||||||||||||||   |||| |
seq2  TGCTAGGTCCAT-ATGAACAGTACTA-TGACATGTAGACAA--CTACAAA  46

seq1  CTTAATAAGCTTGTGTTTGTATTTATTATATGTCTCGCATTTGTACTAAG  100
      | ||   |||| |||  |        ||||| ||||||| ||||||| ||
seq2  CCTA--TAGCTGGTGGAT-------ATATATTTCTCGCA-TTGTACT-AG  85

seq1  TCTTGTGTGCGAATTTATT-TAATTAATTTATTTAATGCTTAGCACAGCC  149
      || |||||||||  ||||| ||||||       | |||| ||||||||||
seq2  TC-TGTGTGCGA--TTATTATAATTA-------TTATGC-TAGCACAGCC  124

seq1  CCATGGGGTAATTATTCTTATTCACACTGTATGGGTAAGGCAGTAGAGCA  199
      |||| | |||||   |||   ||||||||||||||||| |||||||||||
seq2  CCAT-GAGTAAT--ATCT--ATCACACTGTATGGGTAA-GCAGTAGAGCA  168

seq1  TGGAGAGATGACTGTAGCAAATTAATGAATCTCAAGAAAGGTGGAAAAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGACTGTAGCAAATTAATGAATCTCAAGAAAGGTGGAAAAGA  218

seq1  CTTCACTCCAAG-AATGATGATCAGGAACTTAACTTGAGTTAAGAAGCCC  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTCACTCCAAGAAATGATGATCAGGAACTTAACTTGAGTTAAGAAGCCC  268

seq1  ACTTGCAATAATTCTAGATCAGGGCCATGGATAGAAAGCACATGTAAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAATAATTCTAGATCAGGGCCATGGATAGAAAGCACATGTAAGAA  318

seq1  AAGGATGAGCAATGTCCCTAGTAAGCAGAGATGCCCTGTGTTTCTGTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAGCAATGTCCCTAGTAAGCAGAGATGCCCTGTGTTTCTGTTTA  368

seq1  GTGACCAAGATACTTCTTGTGAAACTATTAGTGTCTGTCTTCAAGGAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAGATACTTCTTGTGAAACTATTAGTGTCTGTCTTCAAGGAGTC  418

seq1  ATTTAAGATAGTTTTTCTTTCTTTCTTCCCACCCTGATTTATTAGAATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATAGTTTTTCTTTCTTTCTTCCCACCCTGATTTATTAGAATTG  468

seq1  GAAATTGGAAAATTTTAAATATAGAAAATCATGGCTAGAAAAATAAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGAAAATTTTAAATATAGAAAATCATGGCTAGAAAAATAAAATA  518

seq1  ACTGGTCTGGGAATATAGTTTGGTGGTACAGTTGTAACCCTAGTATGCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTGGGAATATAGTTTGGTGGTACAGTTGTAACCCTAGTATGCAA  568

seq1  AAGGACCAGGCTTGCTCTCAGCACCTAAAAATAGCATAAAAGCATGGGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCAGGCTTGCTCTCAGCACCTAAAAATAGCATAAAAGCATGGGCA  618

seq1  TAATCACAAAATTGCGTTATTACAAGGCTAGTAGTCACTTCAAATATTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAAAATTGCGTTATTACAAGGCTAGTAGTCACTTCAAATATTTG  668

seq1  GTAGGCAGTAGTAATGAGAAAGAATTCTCTAGCATTGTTTTTTTTTGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGTAGTAATGAGAAAGAATTCTCTAGCATTGTTTTTTTTTGTTT  718

seq1  TTTGTTTTTTTTTTTTTTACTTCTCTGTCTCGTCCCAAGCTTTTGGCTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTTTTTACTTCTCTGTCTCGTCCCAAGCTTTTGGCTGA  768

seq1  CTTCTGACTTTATTTTTTGTGGGAATAGGTAGTGCTGTATACAAAACGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACTTTATTTTTTGTGGGAATAGGTAGTGCTGTATACAAAACGAA  818

seq1  CACGTGGATAGAACAGAAGAGTTAGCTGGAACTCTCTTTGTAAGAAAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGATAGAACAGAAGAGTTAGCTGGAACTCTCTTTGTAAGAAAGAG  868

seq1  CTTTACGATAGGATGGGACTATAATAACTCTTGAAAAGAAAGTCTCCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACGATAGGATGGGACTATAATAACTCTTGAAAAGAAAGTCTCCTCT  918

seq1  CAGTTTGAATAAGATGTATTTGGGGACACATAATGCCTTCATTTGCTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGAATAAGATGTATTTGGGGACACATAATGCCTTCATTTGCTGGA  968

seq1  AAGATAATGCTCACATATAATGGCATAACAAGTTGTGAATTTGGACCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGCTCACATATAATGGCATAACAAGTTGTGAATTTGGACCTGA  1018

seq1  AAGTAGAAATGTACTATGATACCCTGAGAATGTAGCTTTGCATACATTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAATGTACTATGATACCCTGAGAATGTAGCTTTGCATACATTAC  1068

seq1  CACACTATTGGCTGAGAAGTAATGAGTAGAAATCTGAACTTTGATACATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATTGGCTGAGAAGTAATGAGTAGAAATCTGAACTTTGATACATG  1118

seq1  AATTC  1153
      |||||
seq2  AATTC  1123

seq1: chr1_55845707_55846661
seq2: B6Ng01-004J18.g_68_1019

seq1  GAATTCCCGGGGTTCCTTAATCTGCTCAACCAGATTTTTCAGTTTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGGGTTCCTTAATCTGCTCAACCAGATTTTTCAGTTTTTCTG  50

seq1  TCTGGTGACACAGTTCACTTGCCCCACCCATGGGCAGATCTCTAAAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGACACAGTTCACTTGCCCCACCCATGGGCAGATCTCTAAAGTCC  100

seq1  TAAAGAATTCTGTATGACAAACAGAACCAAAGAAACATTTTCCCCTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATTCTGTATGACAAACAGAACCAAAGAAACATTTTCCCCTCCAG  150

seq1  GCAGCTGGTCACGTGAACAGTAGGATGGTCACATGCACAGTAGGACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGTCACGTGAACAGTAGGATGGTCACATGCACAGTAGGACAGCA  200

seq1  AGGCTCTCCCTCCTGTTTGTACTTGCTTGCTCAACAGGAAGTAATGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCCCTCCTGTTTGTACTTGCTTGCTCAACAGGAAGTAATGGCTA  250

seq1  TTTGGTCTTCTCAGCCACTCAGTTTCACCCTGACTAAGTCCTGCGCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTCTCAGCCACTCAGTTTCACCCTGACTAAGTCCTGCGCATCC  300

seq1  TTCTCCACCATGGAAAACAGTTTGGACAAGAAAAATGAGATTTGGAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACCATGGAAAACAGTTTGGACAAGAAAAATGAGATTTGGAGGCC  350

seq1  TAAAGAGAAAGCCACAGGCTCCCTGTTGAAGGACTTGATTCTGGTGCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAAAGCCACAGGCTCCCTGTTGAAGGACTTGATTCTGGTGCGTG  400

seq1  CGTTCTGCTGCAGGTGGAGGTGGAGGTGGAGAAGGAGGAATTTACAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGCTGCAGGTGGAGGTGGAGGTGGAGAAGGAGGAATTTACAGGAG  450

seq1  GACCGCCTTGTGTGTCAGCTAACGAGGCTCTCAGTAAGGAAACAATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGCCTTGTGTGTCAGCTAACGAGGCTCTCAGTAAGGAAACAATCAGG  500

seq1  AAGGGGGTGCCACATTTCATAGTTGTGAGAAGGGTTTTCCACAAAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTGCCACATTTCATAGTTGTGAGAAGGGTTTTCCACAAAGGATG  550

seq1  GCTCTGGGCCACCATGGGAAGAAATGAAAACCTTGTTTCCTGGAACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGCCACCATGGGAAGAAATGAAAACCTTGTTTCCTGGAACATGA  600

seq1  GAGAGATCTG-TTGCTGTGTCCAGATGGAAGAGCCATTTCTTAGTGATAG  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTGTTTGCTGTGTCCAGATGGAAGAGCCATTTCTTAGTGATAG  650

seq1  GTGTTTGCTAGATGTCATAACAGTAGAATTGCCTTGGCTAATTGGAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCTAGATGTCATAACAGTAGAATTGCCTTGGCTAATTGGAAACA  700

seq1  GCAAGTCTGACATAAGACTGAGAGTCCAGCAGACCTATGAATTTAACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTGACATAAGACTGAGAGTCCAGCAGACCTATGAATTTAACAAG  750

seq1  GCATAATCTCACTATTGTCTAAGTAC-TTTTTATAGAGAGCCAGTGTTTT  798
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAT-ATCTCACTATTGTCTAAGTACTTTTTTATAGAGAGCCAGTGTTTT  799

seq1  ATGCATGCTCTTGAAGACCTCAGATGTGTACCAGTTATGCCAGGACCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTCTTGAAGACCTCAGATGTGTACCAGTTATGCCAGGACCCTG  849

seq1  TGGCTCTTCCCCACTTCCCAACTGGAGACAACTGGATGTCTATACATCAG  898
      |||||| ||||||||| ||||||||||||||||||||||||||||||| |
seq2  TGGCTC-TCCCCACTTTCCAACTGGAGACAACTGGATGTCTATACATCTG  898

seq1  GAACCATGCTCCCAAAGCTTCTTGCTTATCCTTAAGATAAACATGGTTTA  948
      | ||||||||||||||||||||||||||||||| |||  |||||||||| 
seq2  G-ACCATGCTCCCAAAGCTTCTTGCTTATCCTT-AGAATAACATGGTTT-  945

seq1  CAAATGA  955
      |||||||
seq2  CAAATGA  952