BAC Information

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BAC

Clone NameB6Ng01-004L17
Chromosome1 (Build37)
Map Location 60,252,661 - 60,396,820
singlet/doubletdoublet
Overlap geneNbeal1
Upstream geneAls2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L17.bB6Ng01-004L17.g
ACCDH842064DH842065
length1,1601,109
definitionDH842064|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L17, 5' end.DH842065|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,252,661 - 60,253,822)(60,395,717 - 60,396,820)
sequence
gaattctacctgtctttgccttatgagtgctgggattaaaggtggtggtg
agacttcactctggcttgcttctaccttattattttgagggtttcttagt
agccttgctgaataggtgatgctggctgaaacacaggaaagcatggtgcg
agcttcttgggaagagtggtagaaactgagacgtacctaagtgtctcttc
attattgaataccatttcatggcaaggtaccacagtttgcttgcttattc
acttacattgaaggacagtgcttccagtttggggctgttatttataaaac
tgctataaatcttcatgaccaggttttcattgggtatttttcagcccatg
tagaaaatacccaggaacagtaatggtatatcatgtttgtaacattccca
caatcaatgaatgaggatttccattgttccccatttttctagtatttgat
atgctattctttcagattttggctattgcagtaggtgtgtagtatttcat
tgtttttccttaatgataaaaaatacttaacctctttttatctttgagac
tgttacaatgttttggtgaagcatctatataagttttgtccagttttttt
tttttttattttaaaaattatttatttacattccagccattgcccccctt
cccttttggtcccccctcccacagttcctcatcccatttctcctcccctt
gcctctgagagggtgcgtccccccacactccccagacattccaattccct
ggggccttaatttttctggtatatatgtatgtggggacttggaccagcct
gtgaaagctcccaggggtctgggttagttgagactgctggtcttcctgtt
gggttgccctcctcttcagcttcttgaatccttcccctaatccaaccata
gggatccctgacttcagtccaatggttagggtgtagtatctgtgtctgtc
tcagtcagctgctggtttggcatctcagaggacagtcatgctaggcttct
gtctgtaagcacacatagcatcagcaataggccatgtggccctcccaatg
aaataggtccaagttggggctgtctatggaacatctttcttcagtcctat
cttccatttttgtcccttcaggtttttttcccccacaggaataattctgg
tccgaaattt
gaattcactttgtagacaaggctgacctcaaactcaggaggatcctctac
ctcccaagtattgggattaaaggcctgcaccaccacgtccactgtcgatg
tcctttttatggagcccagatagactgttgtgctccctgttgagaagcta
taaggcctagttttctgatgtggctttaatacacacaagtaccttaggaa
ccttacctacttgggtaagtttatatgtgggaacttattacttgtaggaa
tagaatttatcaagttatttctcaaaaggctggtgctggacaggtgacag
tgtctacatgcacaaattagatagtcaattttgctactaattttatggga
atttgtctgaatgaaagttttttgttcttgaaaaacagttctcttaccat
tggtcaactgtcaatgcaaaacatagctcttaacttcaaagagaataaga
gatactttatttgagccaaatataggtgaacatggtccaggaatagagtt
gggttgccccaaataacatgaatcttttctatagacttttatagtcacag
aagaaaagaaagtgatgtcagggcattcaccaacatacacgagtacatca
agtaggcaagtgtggtggtttgaatgagaatggttccctataggccactg
tttgaacgttgtccaccagttggtggaattgtttgtaaaggattaggagg
tgtggccttgttgaaggacgtgtgtttcttggggtgagtcttgaggtttc
aaaggcagccaggcctcccatttctgagacatggtattattaaattgtct
gagtttgccttgaactaactctgtagtccacataagccttgaacttctga
tcctcctgccttagactctcaagtagtaaaggcttatagttttgtatcat
taggccaaacttccaaaggtttaaaaaaaattctcattcagttgattgat
gtgatttgaaattgacaataaaacataagcttttatcatcatttgaaaac
acttatctgatgtctgatatgggttttactgaccctgtgactgacctggc
ctttggatcacccattgatttagagacattgatgtagtaagtacagagac
ccagtgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60252661_60253822
seq2: B6Ng01-004L17.b_46_1205

seq1  GAATTCTACCTGTCTTTGCCTTATGAGTGCTGGGATTAAAGGTGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTGTCTTTGCCTTATGAGTGCTGGGATTAAAGGTGGTGGTG  50

seq1  AGACTTCACTCTGGCTTGCTTCTACCTTATTATTTTGAGGGTTTCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCACTCTGGCTTGCTTCTACCTTATTATTTTGAGGGTTTCTTAGT  100

seq1  AGCCTTGCTGAATAGGTGATGCTGGCTGAAACACAGGAAAGCATGGTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTGAATAGGTGATGCTGGCTGAAACACAGGAAAGCATGGTGCG  150

seq1  AGCTTCTTGGGAAGAGTGGTAGAAACTGAGACGTACCTAAGTGTCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTGGGAAGAGTGGTAGAAACTGAGACGTACCTAAGTGTCTCTTC  200

seq1  ATTATTGAATACCATTTCATGGCAAGGTACCACAGTTTGCTTGCTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGAATACCATTTCATGGCAAGGTACCACAGTTTGCTTGCTTATTC  250

seq1  ACTTACATTGAAGGACAGTGCTTCCAGTTTGGGGCTGTTATTTATAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATTGAAGGACAGTGCTTCCAGTTTGGGGCTGTTATTTATAAAAC  300

seq1  TGCTATAAATCTTCATGACCAGGTTTTCATTGGGTATTTTTCAGCCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAATCTTCATGACCAGGTTTTCATTGGGTATTTTTCAGCCCATG  350

seq1  TAGAAAATACCCAGGAACAGTAATGGTATATCATGTTTGTAACATTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATACCCAGGAACAGTAATGGTATATCATGTTTGTAACATTCCCA  400

seq1  CAATCAATGAATGAGGATTTCCATTGTTCCCCATTTTTCTAGTATTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATGAATGAGGATTTCCATTGTTCCCCATTTTTCTAGTATTTGAT  450

seq1  ATGCTATTCTTTCAGATTTTGGCTATTGCAGTAGGTGTGTAGTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTCTTTCAGATTTTGGCTATTGCAGTAGGTGTGTAGTATTTCAT  500

seq1  TGTTTTTCCTTAATGATAAAAAATACTTAACCTCTTTTTATCTTTGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCTTAATGATAAAAAATACTTAACCTCTTTTTATCTTTGAGAC  550

seq1  TGTTACAATGTTTTGGTGAAGCATCTATATAAGTTTTGTCCAGTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAATGTTTTGGTGAAGCATCTATATAAGTTTTGTCCAGTTTTTTT  600

seq1  TTTTTTTATTTTAAAAATTATTTATTTACATTCCAGCCATTGCCCCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTTTAAAAATTATTTATTTACATTCCAGCCATTGCCCCCCTT  650

seq1  CCCTTTTGGTCCCCCCTCCCACAGTTCCTCATCCCATTTCTCCTCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGGTCCCCCCTCCCACAGTTCCTCATCCCATTTCTCCTCCCCTT  700

seq1  GCCTCTGAGAGGGTGCGTCCCCCCACACTCCCCAGACATTCCAATTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAGAGGGTGCGTCCCCCCACACTCCCCAGACATTCCAATTCCCT  750

seq1  GGGGCCTTAATTTTTCTGGTATATATGTATGTGGGGACTTGGACCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTTAATTTTTCTGGTATATATGTATGTGGGGACTTGGACCAGCCT  800

seq1  GTGAAAGCTCCCAGGGGTCTGGGTTAGTTGAGACTGCTGGTCTTCCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCTCCCAGGGGTCTGGGTTAGTTGAGACTGCTGGTCTTCCTGTT  850

seq1  GGGTTGCCCTCCTCTTCAGCTTCTTGAATCCTTCCCCTAATCCAACCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCCCTCCTCTTCAGCTTCTTGAATCCTTCCCCTAATCCAACCATA  900

seq1  GGGATCCCTGACTTCAGTCCAATGG-TAGGGTGTAGTATCTGTGTCTGTC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGATCCCTGACTTCAGTCCAATGGTTAGGGTGTAGTATCTGTGTCTGTC  950

seq1  TCAGTCAGCTGCTGGTTTGGCATCTCAGAGGACAGTCATGCTAGGCTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGCTGCTGGTTTGGCATCTCAGAGGACAGTCATGCTAGGCTTCT  1000

seq1  GTCTGTAAGCACACCATAGCATCAGCAATAGGCCATGATGCCCTCCCCAT  1049
      ||||||||||||| |||||||||||||||||||||||  |||||||| ||
seq2  GTCTGTAAGCACA-CATAGCATCAGCAATAGGCCATGTGGCCCTCCCAAT  1049

seq1  GAAATAGGTCCCAAGTTGGGCCTGTCATTGGAACATCTTTCCTTCAGTCT  1099
      ||||||||| |||||||||| |||||  |||||||||||| |||||||| 
seq2  GAAATAGGT-CCAAGTTGGGGCTGTCTATGGAACATCTTT-CTTCAGTCC  1097

seq1  CATC-TCCATTTTTGTCCCTGCAGTTTTTTTCCCCCCACAGGAATAATTC  1148
       ||| ||||||||||||||| ||| |||||| ||||||||||||||||||
seq2  TATCTTCCATTTTTGTCCCTTCAGGTTTTTTTCCCCCACAGGAATAATTC  1147

seq1  TGGGTCAGAAATTT  1162
      | |||| |||||||
seq2  T-GGTCCGAAATTT  1160

seq1: chr1_60395717_60396820
seq2: B6Ng01-004L17.g_67_1175 (reverse)

seq1  CTTCACTGGAGTCTTCTGTACTACATACATCAATGTCTCTAAATCAATGG  50
      ||||||||| ||| ||||||||   |||||||||||||||||||||||||
seq2  CTTCACTGG-GTC-TCTGTACTTACTACATCAATGTCTCTAAATCAATGG  48

seq1  GTGATC--AAAGCCAGGTCAGTCACAGGGTCAGTTAAAACCATATCAGAC  98
      ||||||  || ||||||||||||||||||||||| ||| |||||||||||
seq2  GTGATCCAAAGGCCAGGTCAGTCACAGGGTCAGTAAAACCCATATCAGAC  98

seq1  ATCAGATAAGTGTTTTCAAATGATGAT-AAAGCTTATGTTTTATTGTC-A  146
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  ATCAGATAAGTGTTTTCAAATGATGATAAAAGCTTATGTTTTATTGTCAA  148

seq1  TTTCATATCACATCAATCAACTG-ATGAGAATTTTTTTTAAACCTTTGG-  194
      ||||| ||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TTTCAAATCACATCAATCAACTGAATGAGAATTTTTTTTAAACCTTTGGA  198

seq1  AGTTTGGCCTAATGATACAGAACTATAAGCC-TTACTACTTGAGAGTCTA  243
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  AGTTTGGCCTAATGATACAAAACTATAAGCCTTTACTACTTGAGAGTCTA  248

seq1  AGGCAGGAGGATCAGAAGTTCAAGGCTTATGTGGACTACAGAGTTAGTTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGGATCAGAAGTTCAAGGCTTATGTGGACTACAGAGTTAGTTC  298

seq1  AAGGCAAACTCAGACAATTTAATAATACCATGTCTCAGAAATGGGAGGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACTCAGACAATTTAATAATACCATGTCTCAGAAATGGGAGGCC  348

seq1  TGGCTGCCTTTGAAACCTCAAGACTCACCCCAAGAAACACACGTCCTTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTTTGAAACCTCAAGACTCACCCCAAGAAACACACGTCCTTCA  398

seq1  ACAAGGCCACACCTCCTAATCCTTTACAAACAATTCCACCAACTGGTGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCACACCTCCTAATCCTTTACAAACAATTCCACCAACTGGTGGA  448

seq1  CAACGTTCAAACAGTGGCCTATAGGGAACCATTCTCATTCAAACCACCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTCAAACAGTGGCCTATAGGGAACCATTCTCATTCAAACCACCAC  498

seq1  ACTTGCCTACTTGATGTACTCGTGTATGTTGGTGAATGCCCTGACATCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTACTTGATGTACTCGTGTATGTTGGTGAATGCCCTGACATCAC  548

seq1  TTTCTTTTCTTCTGTGACTATAAAAGTCTATAGAAAAGATTCATGTTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTCTGTGACTATAAAAGTCTATAGAAAAGATTCATGTTATT  598

seq1  TGGGGCAACCCAACTCTATTCCTGGACCATGTTCACCTATATTTGGCTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAACCCAACTCTATTCCTGGACCATGTTCACCTATATTTGGCTCA  648

seq1  AATAAAGTATCTCTTATTCTCTTTGAAGTTAAGAGCTATGTTTTGCATTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTATCTCTTATTCTCTTTGAAGTTAAGAGCTATGTTTTGCATTG  698

seq1  ACAGTTGACCAATGGTAAGAGAACTGTTTTTCAAGAACAAAAAACTTTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGACCAATGGTAAGAGAACTGTTTTTCAAGAACAAAAAACTTTCA  748

seq1  TTCAGACAAATTCCCATAAAATTAGTAGCAAAATTGACTATCTAATTTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAAATTCCCATAAAATTAGTAGCAAAATTGACTATCTAATTTGT  798

seq1  GCATGTAGACACTGTCACCTGTCCAGCACCAGCCTTTTGAGAAATAACTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAGACACTGTCACCTGTCCAGCACCAGCCTTTTGAGAAATAACTT  848

seq1  GATAAATTCTATTCCTACAAGTAATAAGTTCCCACATATAAACTTACCCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCTATTCCTACAAGTAATAAGTTCCCACATATAAACTTACCCA  898

seq1  AGTAGGTAAGGTTCCTAAGGTACTTGTGTGTATTAAAGCCACATCAGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTAAGGTTCCTAAGGTACTTGTGTGTATTAAAGCCACATCAGAAA  948

seq1  ACTAGGCCTTATAGCTTCTCAACAGGGAGCACAACAGTCTATCTGGGCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCTTATAGCTTCTCAACAGGGAGCACAACAGTCTATCTGGGCTC  998

seq1  CATAAAAAGGACATCGACAGTGGACGTGGTGGTGCAGGCCTTTAATCCCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAGGACATCGACAGTGGACGTGGTGGTGCAGGCCTTTAATCCCA  1048

seq1  ATACTTGGGAGGTAGAGGATCCTCCTGAGTTTGAGGTCAGCCTTGTCTAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGGGAGGTAGAGGATCCTCCTGAGTTTGAGGTCAGCCTTGTCTAC  1098

seq1  AAAGTGAATTC  1104
      |||||||||||
seq2  AAAGTGAATTC  1109