BAC Information

Click to search

BAC

Clone NameB6Ng01-005A03
Chromosome1 (Build37)
Map Location 118,801,103 - 118,802,226
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A03.bB6Ng01-005A03.g
ACCDH842264DH842265
length1,117941
definitionDH842264|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A03, 5' end.DH842265|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccaaagcttgctgcatcatatccatagaaaagagccaagaaaac
taaatgtataggcctttgcttgctagctttctccatgctagtaccaagtt
gtatcctgtctgcactatcttaggattccttatctagtgtttgacgctac
acacagtgttctgagcctttctacaacagtcaacaacaaaaatgatttca
tacagatgtgccaacatgctagttttatctaggcaatattttcaaatgag
actgaattccagtgcttctggattttttcccagaccacaatggaaaatta
atcaagaaaatcatgaaagccatctctctcattcttataacatgaatcat
ctgaacattcagttgggtcataagattcacagaacaagacctatttaccc
agaggaaaatggtgcagctgtagagtcatagtgagagaccaaatattttg
ggttcagaatttatcttagagaacctgacctaaggttgtactcaagttaa
ctaagaaactggcagctagcacctgtttataggttatctctgagcaaggc
ttatgtctagcaccagttttcaggttatttcccaacaaatctgcaactgc
aggttacaaacctgcctgcctctgacaatttacttcctaacaaccactaa
tcagaaggaaaacagaagttaagttagagcacagttttgctctcagcact
agccaattatgtaaaagacctccaattagatgtgtatcaggctagatact
gcctttttgcctctattaaatgcttgcctgaaactgggttctgggccctc
tcttgttctcttaaaaaaaaaaaaaacaattaatcttttttttattggat
atttctttatttatatttcaaatgttgtcccattttccggttacctccca
cccccacaaacccctatctcatctcccttcaccctacttttatgaggtgt
tcctccagtgatccactcctgactcctgactagaattcccctaccctggg
gtatcagccttcccatgatgcctggcaggccatcttctgctacatatgca
gctgagccatgtgtactcctggttggtggcctagtccctgagctatgggg
ggtggatctgctggttg

gaattccttgtttatctctgaacctcagtttccaaacgggttatttgatt
tcctggattccagcttcttgaatttttggtatatattggatattagtacc
ctatcagatttagaattggtaaaaatactttctcaatctgttggtggcct
ttttgtctttttgacagtgtcttttgccttacaaaagctttgcaattaat
gaggtcccatttcgtgatagttgatcttacagcacaaaccattgcttttc
tgttcacgaatttttcccctgtgccaatatctttgaggcttttcggactt
tctcctctataagttttagtttctctggttttatgtggagttccttaatc
cacttagacttgagcttcatacaagtagataagaatggatctagtcccat
tcttctacatgacaataaccagtgaaactaccaccatttgttgaacatgc
tgtcttttttccactggatggttttagctcctttgtcaaagatcaagtga
ctataggtatgtgggttcatttctgggtcttcaattctattccattgatc
tgcctgtctgtcgatataccagtaccatgcagttttttaacacaattgct
ctgtcgtatagcttgaggtcaggcatagtaattccccaagaggatgtttt
attgttgagaatagtttttgctatcctagatttttttgttattccagatg
aatttgaaattgccctaactcagtgaagagttgagttgggattttgatgg
ggattgcattgaatctgtaggattgcttttggtaggatagccattttgac
tatattaatactgccaaactatgagcatggggggatctttcatctattga
gatattcttgatttctttcttcagagacttgatgttcttcaacatagaga
tcttcacttcttagccaaattcacaggaagggaatttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118801103_118802226
seq2: B6Ng01-005A03.b_46_1162 (reverse)

seq1  CAACCAG-ACTCCCACCCCCCATAGCTCCCAGGGACTAAGCCACCAACCA  49
      ||||||| |   |||||||||||||||  ||||||||| |||||||||| 
seq2  CAACCAGCAGATCCACCCCCCATAGCT--CAGGGACTAGGCCACCAACC-  47

seq1  AGGAGTACACATGGCTCCAGCTGCATATGTAGCAGAAGATGGCCTTGCCA  99
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  AGGAGTACACATGGCT-CAGCTGCATATGTAGCAGAAGATGGCC-TGCCA  95

seq1  GGCATCAATGGGAAGGCTTGATACCCCAGGGTAGGGGAATTCTAGTTCAG  149
      |||||| |||||||||| ||||||||||||||||||||||||||| ||||
seq2  GGCATC-ATGGGAAGGC-TGATACCCCAGGGTAGGGGAATTCTAG-TCAG  142

seq1  GAAGTCAGGAGTGGATCACTGGAGGAACACCCTCATAAAAGTAGGGTGAA  199
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  G-AGTCAGGAGTGGATCACTGGAGGAACA-CCTCATAAAAGTAGGGTGAA  190

seq1  GGGAGATGAGATAGGGGTTTGTGGGGGTGGGAGGTAACCGGAAAATGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGAGATAGGGGTTTGTGGGGGTGGGAGGTAACCGGAAAATGGGA  240

seq1  CAACATTTGAAATATAAATAAAGAAATATCCAAT-AAAAAAAGATTAATT  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAACATTTGAAATATAAATAAAGAAATATCCAATAAAAAAAAGATTAATT  290

seq1  G-TTTTTTTTTTTTTAAGAGAACAAGAGAGGGCCCAGAACCCAGTTTCAG  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTAAGAGAACAAGAGAGGGCCCAGAACCCAGTTTCAG  340

seq1  GCAAGCATTTAATAGAGGCAAAAAGGCAGTATCTAGCCTGATACACATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTTAATAGAGGCAAAAAGGCAGTATCTAGCCTGATACACATCT  390

seq1  AATTGGAGGTCTTTTACATAATTGGCTAGTGCTGAGAGCAAAACTGTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGGTCTTTTACATAATTGGCTAGTGCTGAGAGCAAAACTGTGCT  440

seq1  CTAACTTAACTTCTGTTTTCCTTCTGATTAGTGGTTGTTAGGAAGTAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAACTTCTGTTTTCCTTCTGATTAGTGGTTGTTAGGAAGTAAAT  490

seq1  TGTCAGAGGCAGGCAGGTTTGTAACCTGCAGTTGCAGATTTGTTGGGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGGCAGGCAGGTTTGTAACCTGCAGTTGCAGATTTGTTGGGAAA  540

seq1  TAACCTGAAAACTGGTGCTAGACATAAGCCTTGCTCAGAGATAACCTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGAAAACTGGTGCTAGACATAAGCCTTGCTCAGAGATAACCTATA  590

seq1  AACAGGTGCTAGCTGCCAGTTTCTTAGTTAACTTGAGTACAACCTTAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGCTAGCTGCCAGTTTCTTAGTTAACTTGAGTACAACCTTAGGT  640

seq1  CAGGTTCTCTAAGATAAATTCTGAACCCAAAATATTTGGTCTCTCACTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCTCTAAGATAAATTCTGAACCCAAAATATTTGGTCTCTCACTAT  690

seq1  GACTCTACAGCTGCACCATTTTCCTCTGGGTAAATAGGTCTTGTTCTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACAGCTGCACCATTTTCCTCTGGGTAAATAGGTCTTGTTCTGTG  740

seq1  AATCTTATGACCCAACTGAATGTTCAGATGATTCATGTTATAAGAATGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGACCCAACTGAATGTTCAGATGATTCATGTTATAAGAATGAG  790

seq1  AGAGATGGCTTTCATGATTTTCTTGATTAATTTTCCATTGTGGTCTGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTTTCATGATTTTCTTGATTAATTTTCCATTGTGGTCTGGGA  840

seq1  AAAAATCCAGAAGCACTGGAATTCAGTCTCATTTGAAAATATTGCCTAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAGAAGCACTGGAATTCAGTCTCATTTGAAAATATTGCCTAGA  890

seq1  TAAAACTAGCATGTTGGCACATCTGTATGAAATCATTTTTGTTGTTGACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAGCATGTTGGCACATCTGTATGAAATCATTTTTGTTGTTGACT  940

seq1  GTTGTAGAAAGGCTCAGAACACTGTGTGTAGCGTCAAACACTAGATAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGAAAGGCTCAGAACACTGTGTGTAGCGTCAAACACTAGATAAGG  990

seq1  AATCCTAAGATAGTGCAGACAGGATACAACTTGGTACTAGCATGGAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAAGATAGTGCAGACAGGATACAACTTGGTACTAGCATGGAGAAA  1040

seq1  GCTAGCAAGCAAAGGCCTATACATTTAGTTTTCTTGGCTCTTTTCTATGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAAGCAAAGGCCTATACATTTAGTTTTCTTGGCTCTTTTCTATGG  1090

seq1  ATATGATGCAGCAAGCTTTGGGAATTC  1124
      |||||||||||||||||||||||||||
seq2  ATATGATGCAGCAAGCTTTGGGAATTC  1117


| Home | SequenceCutter | Blast | Download |