BAC Information

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BAC

Clone NameB6Ng01-005E05
Chromosome11 (Build37)1 (Build37)
Map Location 119,912,752 - 119,913,84563,271,250 - 63,271,391
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk
Downstream geneAzi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E05.bB6Ng01-005E05.g
ACCDH842447DH842448
length1,086749
definitionDH842447|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E05, 5' end.DH842448|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,912,752 - 119,913,845)(63,271,250 - 63,271,391)
sequence
gaattccacactgagcaacaggaaacacgacacacgacacgctataggac
tctatttttaaataatgtccagaataggcaatcccacagggactgagcag
ggatcacagctgcttggggctcagcgagggggatgggccatgggtgtttc
ctggggacagtttccttctggaacgagaggactgctctgcagtgggcagt
ggtgatggtcacacagtggcctggatgtgtcaatactactggttcctccg
cctcaggttggtttatattatgttctgtggatttcaccacatggtatgca
cagtagggagggatgattttatttcccttatattagtttagtttaggctg
gcctgtacgcacaccatgcctgatttacaaggtcctcatgcgtgtgaggc
aagcactctaccaactaaatacaccccgtattttattaatttattcttga
ctacttgagatgggatcctactgtgtagctctgggtagtctgaaactcac
tctgtagaacaggctggcctcgaactggaagcaatcgttctggctctgtc
aacttagtgctgggattacaggtgtccaacaacacaccagacagatgttt
ttcagtaacataaaagccaaagaaataagtatctccaagagatgctgtag
ggtagtacctggcctggccaaggaagccagggaggggatagtctcaggga
ggggaggcaagagccagaagccaggccatgcttcaaggattctagacctg
gcacaaccctcgtggacactccctcatgggccctctgcttctgttggtgc
tgctgcttctctgccagctctgggccttggcttacgagagccagaggacc
cgtagctgtggcaacactcgcactatttatttccctgtcctcttggagag
actgtgaagaagctcatactgcccacttctctgcctggagcaacagcaag
tgcagcctgcctgcccaccccgtgtccccagcacctgcctgtacggatga
gcctgaaggaaacaagcttctttctaggagcaattttatgaaaagacggc
cctcaagcctcagcctcagcctggttgtcctttgcg
gaattctctaaggagagctactgaggccgggcaacatgtggcagggcagt
tcccacaggaaggccctgagaggccattgcacgaagcagaagtaaagcct
gggctgtcagagatcccaggtggtaggggtgtgagagtagaggtgcctgc
tgggaactgctggcaggaagtggaatcagcttaaaagatgtatctggcca
ggcatggtggtgcgcacctttaatcccagcactcgggaggcagaggcagg
cagatttctgagtttgaggccagtctagtctacaaagtgagttccaggaa
accctgtctcgaaaacaaacaaaaaaagatgtatctggaagtcagcaaag
ctggactggtggggccgcccaagtcttccgacaccagacatggtgttgtt
accctgctgagtttcagtcttgctctgggtatttcaccagagtccctttc
cctcccttttggaacagtaatgtgtagtagtctgtgccattatgtgttgg
aagaatgggatttgccttttgagttcacagttactgttaagggattggct
tgagtctcagaagtctttggacctttaaacagtgttgaaactgggagagt
gtggggactttctaagtgagactaaatgcagtgatatggccccatgcctg
gagggaggccagggggtagaatgtggtggtctgaatgagactggccctca
tggggtcaaatgtttgaattcttggatcccagttggtggaactgtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119912752_119913845
seq2: B6Ng01-005E05.b_45_1130 (reverse)

seq1  CGCAAAGGGCAAACCACGGGCTGAGGCTGGGGCTTGAGGGCCGTCTTTTC  50
      |||||||| | |||||  ||||||||||| ||||||||||||||||||||
seq2  CGCAAAGGAC-AACCA--GGCTGAGGCTGAGGCTTGAGGGCCGTCTTTTC  47

seq1  ATAAAAATGGCTCCCTAGGAAAGAGCTTGTTCTCCTTCAGGCTCCAATCC  100
      || ||||| ||| ||||| ||  |||||||| ||||||||||||  ||||
seq2  AT-AAAATTGCT-CCTAGAAAGAAGCTTGTT-TCCTTCAGGCTC--ATCC  92

seq1  GTGCAGGGCAGGCTGCTGGGGACACCGGGGTTGGGCAGGCAGGCTGCACC  150
      || || |||||| ||||||||||||  ||| |||||||||||||||||| 
seq2  GTACA-GGCAGG-TGCTGGGGACAC--GGGGTGGGCAGGCAGGCTGCACT  138

seq1  TGCTGCTGCTCCAGGCAAGAG-AGTGGGCAGTATGAGCTTCCTCACAGTC  199
      ||||| |||||||||| |||| ||||||||||||||||||| ||||||||
seq2  TGCTGTTGCTCCAGGC-AGAGAAGTGGGCAGTATGAGCTTCTTCACAGTC  187

seq1  TCTCCAAGGGGACAGGGAAAT-AATAGTGCG-GTGTTGCCACAGCTACGG  247
      |||||||| |||||||||||| ||||||||| ||||||||||||||||||
seq2  TCTCCAAGAGGACAGGGAAATAAATAGTGCGAGTGTTGCCACAGCTACGG  237

seq1  GTCCTCTGGCTCTCGTAAGCCAAGG-CCAGGGCTGGCAGAGAAGCAGCAG  296
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  GTCCTCTGGCTCTCGTAAGCCAAGGCCCAGAGCTGGCAGAGAAGCAGCAG  287

seq1  CACCAACAGAAGCAGAGGGCCCATGAGGGAGTGTCCACGAGGGTTGTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACAGAAGCAGAGGGCCCATGAGGGAGTGTCCACGAGGGTTGTGCC  337

seq1  AGGTCTAGAATCCTTGAAGCATGGCCTGGCTTCTGGCTCTTGCCTCCCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAGAATCCTTGAAGCATGGCCTGGCTTCTGGCTCTTGCCTCCCCT  387

seq1  CCCTGAGACTATCCCCTCCCTGGCTTCCTTGGCCAGGCCAGGTACTACCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACTATCCCCTCCCTGGCTTCCTTGGCCAGGCCAGGTACTACCC  437

seq1  TACAGCATCTCTTGGAGATACTTATTTCTTTGGCTTTTATGTTACTG-AA  495
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACAGCATCTCTTGGAGATACTTATTTCTTTGGCTTTTATGTTACTGAAA  487

seq1  AACATCTGTCTGGTGTGTTGTTGGACACCTGTAATCCCAGCACTAAGTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTCTGGTGTGTTGTTGGACACCTGTAATCCCAGCACTAAGTTG  537

seq1  ACAGAGCCAGAACGATTGCTTCCAGTTCGAGGCCAGCCTGTTCTACAGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCAGAACGATTGCTTCCAGTTCGAGGCCAGCCTGTTCTACAGAG  587

seq1  TGAGTTTCAGACTACCCAGAGCTACACAGTAGGATCCCATCTCAAGTAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAGACTACCCAGAGCTACACAGTAGGATCCCATCTCAAGTAGT  637

seq1  CAAGAATAAATTAATAAAATACGGGGTGTATTTAGTTGGTAGAGTGCTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATAAATTAATAAAATACGGGGTGTATTTAGTTGGTAGAGTGCTTG  687

seq1  CCTCACACGCATGAGGACCTTGTAAATCAGGCATGGTGTGCGTACAGGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACGCATGAGGACCTTGTAAATCAGGCATGGTGTGCGTACAGGCC  737

seq1  AGCCTAAACTAAACTAATATAAGGGAAATAAAATCATCCCTCCCTACTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAACTAAACTAATATAAGGGAAATAAAATCATCCCTCCCTACTGT  787

seq1  GCATACCATGTGGTGAAATCCACAGAACATAATATAAACCAACCTGAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCATGTGGTGAAATCCACAGAACATAATATAAACCAACCTGAGGC  837

seq1  GGAGGAACCAGTAGTATTGACACATCCAGGCCACTGTGTGACCATCACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACCAGTAGTATTGACACATCCAGGCCACTGTGTGACCATCACCA  887

seq1  CTGCCCACTGCAGAGCAGTCCTCTCGTTCCAGAAGGAAACTGTCCCCAGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTGCAGAGCAGTCCTCTCGTTCCAGAAGGAAACTGTCCCCAGG  937

seq1  AAACACCCATGGCCCATCCCCCTCGCTGAGCCCCAAGCAGCTGTGATCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCATGGCCCATCCCCCTCGCTGAGCCCCAAGCAGCTGTGATCCC  987

seq1  TGCTCAGTCCCTGTGGGATTGCCTATTCTGGACATTATTTAAAAATAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTCCCTGTGGGATTGCCTATTCTGGACATTATTTAAAAATAGAG  1037

seq1  TCCTATAGCGTGTCGTGTGTCGTGTTTCCTGTTGCTCAGTGTGGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAGCGTGTCGTGTGTCGTGTTTCCTGTTGCTCAGTGTGGAATTC  1086

seq1: chr1_63271250_63271391
seq2: B6Ng01-005E05.g_265_393

seq1  GCCAGGCGTGGTGGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGG  50
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCAGGCATGGTGGTGCGCACCTTTAATCCCAGCACTCGGGAGGCAGAGG  50

seq1  TAGGCAGATTTC------TGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  94
       |||||||||||      ||||||||| || ||||||| |||||||||||
seq2  CAGGCAGATTTCTGAGTTTGAGGCCAGTCTAGTCTACAAAGTGAGTTCCA  100

seq1  GGACAGCCAGGGCTATACAGAAAAACCCTGTCTTGAAAA-AACCAAAAA  142
      ||                    ||||||||||| ||||| || ||||||
seq2  GG--------------------AAACCCTGTCTCGAAAACAAACAAAAA  129