BAC Information

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BAC

Clone NameB6Ng01-005E21
Chromosome1 (Build37)
Map Location 73,382,877 - 73,541,240
singlet/doubletdoublet
Overlap genePinc, LOC672208
Upstream geneXrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
Downstream geneLOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E21.bB6Ng01-005E21.g
ACCDH842476DH842477
length1,0941,066
definitionDH842476|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E21, 5' end.DH842477|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,382,877 - 73,383,987)(73,540,167 - 73,541,240)
sequence
gaattcttgggcctagatctcaatgtgggactctgaagagtgagagtgta
acattgacctgaaaaatcagccattattgtatactacaagggtctttgta
ccagcttttggctaataattattgggtctgaaaccacttacagacctagt
ttaacagttcaaaatgataaacacctagaccttaataaatgaccaaacag
aatacaacattattggtacacaggacagtcacattccagggttctcctct
gtataggtttcaagtggaagtcagccccagggtgaagggggtgctctcca
gacctacatatcttcaccttcatgtaattaggggtccacaccagcttgtc
tgcacactaccaccagcctttgcgcttttgaaaaaggtgtttcacacatc
tttccagtcaggcaggttatggaccaaatatccaggttggatactagatg
aactcctttacagaggaatgagacttcagaatctgagttagcatcctttc
ttccaaacatgtggaacatcataaaactttaatgtcagcccattctactc
aaggagatggatgaataaatgtataaattgggttttgacatttgtttaat
caaaaccagatcattaaaattagaaacatttgcagcataattgtttcatg
ttgttgcctttggccccttcacagaaagatgagtatttcccttaacatgt
gacagtgacatatgacacagtgggtctattttagatggaaacacttggaa
cacatatacagtggttaaatcaatgggtcagctgtttctgaagcagggtt
gggaataggtcttggcaactttgcatttctatttcaaggtatgacccact
aaaatcatttaaaagttctaaagcaaggattgtaccccaggctgctatgt
tggggggagttcgttgcaattcacttgctgcatgtgagtctcctttattc
attctctacatttccctcttgctccctttctctgcttactttgtcacttc
tttctccagtgaaaaacaaaagcctatctttgtcatagttataagcagtg
gtggtgtaaataactttcacatgaatatggacactgtctatgta
gaattcctaatctaatagtggattttccccttctacattgtgtgtgtatg
tgtgtgtgtgttgctttttatctgcagattcgagggaatctgattggggg
ctggtagcatggcccaatcctggagcttaggtggggtaacaaaaactaca
tacaacacatctgatagttgaataaacagggtcagagccagaagcagaga
ctctgatgagtgaattcacacaggctgatgtattcctggttgtaacttcc
agctctgtgttctgctgatactgacacaaccaaacagttattgtttactc
cccacattctagtggggttagactaggttaccttctagataatgactgct
accaccatgtgtattccagaaggagaagataattccgttcatatttagat
gtcaatgtgaggggaaatggatagaagggcatgggtttaatctcatggca
gccatcaacttaaggatcctttccaaaggatgctgatgaattcagcttag
tgtgtctagaactaagtcctgagtaatagaagcagcatctcagatcaaag
aaattcctgtgtttgttgtccctctttgtgtgctgactgtcctataccag
gtctctgtgaggcctggcaatagtgagacaaaggaagtaaatgaggatgg
agtgcttgcttgactagatatttgtaggaggtggttctgatgctctgccc
aggaatctgtgtgtgaacactgaaagaaggtcctgttccccaactggttc
ttggttgatcaattaaaaaatgctagtggccaataagctggacagaatag
gtgggatttccagtttcccatatgcaggctggcagatgcaagagaggaga
acagatttgccatgctttggagggagaaagagtcaccagtcatgggagat
ctagggtgaagagccattggctgcttcccaactgggcctagggtagcagg
caggagattagaaacataattaagttgccggtagatttacaggcctgaac
aggaggattaagatcagaattatgatgtgaatgtgagtataaagaggtac
ccatacttgaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_73382877_73383987
seq2: B6Ng01-005E21.b_46_1139

seq1  GAATTCTTGGGCCTAGATCTCAATGTGGGACTCTGAAGAGTGAGAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCCTAGATCTCAATGTGGGACTCTGAAGAGTGAGAGTGTA  50

seq1  ACATTGACCTGAAAAATCAGCCATTATTGTATACTACAAGGGTCTTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGACCTGAAAAATCAGCCATTATTGTATACTACAAGGGTCTTTGTA  100

seq1  CCAGCTTTTGGCTAATAATTATTGGGTCTGAAACCACTTACAGACCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTTGGCTAATAATTATTGGGTCTGAAACCACTTACAGACCTAGT  150

seq1  TTAACAGTTCAAAATGATAAACACCTAGACCTTAATAAATGACCAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTTCAAAATGATAAACACCTAGACCTTAATAAATGACCAAACAG  200

seq1  AATACAACATTATTGGTACACAGGACAGTCACATTCCAGGGTTCTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACATTATTGGTACACAGGACAGTCACATTCCAGGGTTCTCCTCT  250

seq1  GTATAGGTTTCAAGTGGAAGTCAGCCCCAGGGTGAAGGGGGTGCTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGTTTCAAGTGGAAGTCAGCCCCAGGGTGAAGGGGGTGCTCTCCA  300

seq1  GACCTACATATCTTCACCTTCATGTAATTAGGGGTCCACACCAGCTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTACATATCTTCACCTTCATGTAATTAGGGGTCCACACCAGCTTGTC  350

seq1  TGCACACTACCACCAGCCTTTGCGCTTTTGAAAAAGGTGTTTCACACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTACCACCAGCCTTTGCGCTTTTGAAAAAGGTGTTTCACACATC  400

seq1  TTTCCAGTCAGGCAGGTTATGGACCAAATATCCAGGTTGGATACTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTCAGGCAGGTTATGGACCAAATATCCAGGTTGGATACTAGATG  450

seq1  AACTCCTTTACAGAGGAATGAGACTTCAGAATCTGAGTTAGCATCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTTTACAGAGGAATGAGACTTCAGAATCTGAGTTAGCATCCTTTC  500

seq1  TTCCAAACATGTGGAACATCATAAAACTTTAATGTCAGCCCATTCTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACATGTGGAACATCATAAAACTTTAATGTCAGCCCATTCTACTC  550

seq1  AAGGAGATGGATGAATAAATGTATAAATTGGGTTTTGACATTTGTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATGGATGAATAAATGTATAAATTGGGTTTTGACATTTGTTTAAT  600

seq1  CAAAACCAGATCATTAAAATTAGAAACATTTGCAGCATAATTGTTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAGATCATTAAAATTAGAAACATTTGCAGCATAATTGTTTCATG  650

seq1  TTGTTGCCTTTGGCCCCTTCACAGAAAGATGAGTATTTCCCTTAACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCTTTGGCCCCTTCACAGAAAGATGAGTATTTCCCTTAACATGT  700

seq1  GACAGTGACATATGACACAGTGGGTCTATTTTAGATGGAAACACTTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGACATATGACACAGTGGGTCTATTTTAGATGGAAACACTTGGAA  750

seq1  CACATATACAGTGGTTAAATCAATGGGTCAGCTGTTTCTGAAGCAGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACAGTGGTTAAATCAATGGGTCAGCTGTTTCTGAAGCAGGGTT  800

seq1  GGGAATAGGTCTTGGCAACTTTGCA-TTCTATTTCAAGGTATGACCCACT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGAATAGGTCTTGGCAACTTTGCATTTCTATTTCAAGGTATGACCCACT  850

seq1  AAAATCATTTAAAAGTTCTAAAGCAAGGATTGTACCCCAGGCTGCTATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTTAAAAGTTCTAAAGCAAGGATTGTACCCCAGGCTGCTATGT  900

seq1  T-GGGGGAGTTCGTTGCAATTCACTTGCTGCATGTGAGTCTCCTTTATTC  948
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGTTCGTTGCAATTCACTTGCTGCATGTGAGTCTCCTTTATTC  950

seq1  ATTCTCTACATTTCCCTCTTGCTCCCTTTCTCCTTGCTTAACTTTGTCAC  998
      ||||||||||||||||||||||||||||||||  ||||| ||||||||||
seq2  ATTCTCTACATTTCCCTCTTGCTCCCTTTCTC--TGCTT-ACTTTGTCAC  997

seq1  TTTCTTTTTCTCCCAGTTTGAAAAACAAAAGGCCTTATTCCTTTGTCATA  1048
      |   | ||||| ||||  |||||||||||||  | |||  ||||||||| 
seq2  T---TCTTTCT-CCAG--TGAAAAACAAAAG--CCTAT--CTTTGTCAT-  1036

seq1  AGTTATAAAGCAGTGGTGGTGTTAAATAAATTTTCACATTGATATGGAAC  1098
      |||||| |||||||||||||| ||||| || ||||||||  |||||| ||
seq2  AGTTAT-AAGCAGTGGTGGTG-TAAAT-AACTTTCACATGAATATGG-AC  1082

seq1  ACTGTCTAATGTA  1111
      ||||||| |||||
seq2  ACTGTCT-ATGTA  1094

seq1: chr1_73540167_73541240
seq2: B6Ng01-005E21.g_68_1133 (reverse)

seq1  CCTTCCTCAACTATTGCGTCCTTCTTTTTACTCCCATTCAACATCTATAA  50
      |||||||||| || || || | ||||| ||||| ||||| ||||| ||||
seq2  CCTTCCTCAAGTA-TGGGTACCTCTTTATACTCACATTC-ACATC-ATAA  47

seq1  TTCTGATCTTTACTTCTCCCTGTTCAGCCCTGTAAATCTACCCGCAACTT  100
      |||||||||| |  ||  ||||||||| |||||||||||||| |||||||
seq2  TTCTGATCTTAA--TCCTCCTGTTCAGGCCTGTAAATCTACCGGCAACTT  95

seq1  AATTATGTTTCTAATCTCCTGCCTGCTACCCTAGGCCCAGTTGGGGAAGC  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATTATGTTTCTAATCTCCTGCCTGCTACCCTAGGCCCAGTT-GGGAAGC  144

seq1  AGCCAATGGCTACTTCACCCTAGATCTCCCATGACTGGTGACTCTTTCTC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGGCT-CTTCACCCTAGATCTCCCATGACTGGTGACTCTTTCTC  193

seq1  CCTCCAAAGCATGGCAAATCTGTTCTCCTCTCTTGCATCTGCCAGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAGCATGGCAAATCTGTTCTCCTCTCTTGCATCTGCCAGCCTGC  243

seq1  ATATGGGAAAACTGGAAATCCCACCTATTCTGTCCAGCTTATTGGCCACT  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGG-AAACTGGAAATCCCACCTATTCTGTCCAGCTTATTGGCCACT  292

seq1  AGCATTTTTTAATTGATCAACCAAGAACCAGTTGGGGAACAGGACCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTTAATTGATCAACCAAGAACCAGTTGGGGAACAGGACCTTCT  342

seq1  TTCAGTGTTCACACACAGATTCCTGGGCAGAGCATCAGAACCACCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTTCACACACAGATTCCTGGGCAGAGCATCAGAACCACCTCCTA  392

seq1  CAAATATCTAGTCAAGCAAGCACTCCATCCTCATTTACTTCCTTTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTAGTCAAGCAAGCACTCCATCCTCATTTACTTCCTTTGTCTC  442

seq1  ACTATTGCCAGGCCTCACAGAGACCTGGTATAGGACAGTCAGCACACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCCAGGCCTCACAGAGACCTGGTATAGGACAGTCAGCACACAAA  492

seq1  GAGGGACAACAAACACAGGAATTTCTTTGATCTGAGATGCTGCTTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAACAAACACAGGAATTTCTTTGATCTGAGATGCTGCTTCTATT  542

seq1  ACTCAGGACTTAGTTCTAGACACACTAAGCTGAATTCATCAGCATCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACTTAGTTCTAGACACACTAAGCTGAATTCATCAGCATCCTTT  592

seq1  GGAAAGGATCCTTAAGTTGATGGCTGCCATGAGATTAAACCCATGCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATCCTTAAGTTGATGGCTGCCATGAGATTAAACCCATGCCCTT  642

seq1  CTATCCATTTCCCCTCACATTGACATCTAAATATGAACGGAATTATCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATTTCCCCTCACATTGACATCTAAATATGAACGGAATTATCTTC  692

seq1  TCCTTCTGGAATACACATGGTGGTAGCAGTCATTATCTAGAAGGTAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGAATACACATGGTGGTAGCAGTCATTATCTAGAAGGTAACCT  742

seq1  AGTCTAACCCCACTAGAATGTGGGGAGTAAACAATAACTGTTTGGTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACCCCACTAGAATGTGGGGAGTAAACAATAACTGTTTGGTTGTG  792

seq1  TCAGTATCAGCAGAACACAGAGCTGGAAGTTACAACCAGGAATACATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCAGCAGAACACAGAGCTGGAAGTTACAACCAGGAATACATCAG  842

seq1  CCTGTGTGAATTCACTCATCAGAGTCTCTGCTTCTGGCTCTGACCCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGAATTCACTCATCAGAGTCTCTGCTTCTGGCTCTGACCCTGTT  892

seq1  TATTCAACTATCAGATGTGTTGTATGTAGTTTTTGTTACCCCACCTAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACTATCAGATGTGTTGTATGTAGTTTTTGTTACCCCACCTAAGC  942

seq1  TCCAGGATTGGGCCATGCTACCAGCCCCCAATCAGATTCCCTCGAATCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATTGGGCCATGCTACCAGCCCCCAATCAGATTCCCTCGAATCTG  992

seq1  CAGATAAAAAGCAACACACACACACATACACACACAATGTAGAAGGGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAAGCAACACACACACACATACACACACAATGTAGAAGGGGAA  1042

seq1  AATCCACTATTAGATTAGGAATTC  1074
      ||||||||||||||||||||||||
seq2  AATCCACTATTAGATTAGGAATTC  1066