BAC Information

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BAC

Clone NameB6Ng01-005G11
Chromosome1 (Build37)
Map Location 40,900,411 - 41,077,246
singlet/doubletdoublet
Overlap geneTmem182, Ppia-ps1_352.1
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9
Downstream geneLOC100041441, LOC383634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G11.bB6Ng01-005G11.g
ACCDH842549DH842550
length2591,080
definitionDH842549|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G11, 5' end.DH842550|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,900,411 - 40,900,670)(41,076,166 - 41,077,246)
sequence
tctgtttatatctatatcccagttttaaattgggttatttggtttgttga
tgtctaatttcttgagttctttatatgttttggatatcagccctctgttg
gatgtagggttggtgaagatctttgcccagtctgtaggctgtggttttgg
tctttggacagtgccatctgcaaagatttttattttaaaaatatttaaaa
gttacaaccttcccccaggtgcttctctctctctctctctctctctctct
ctctctctc
gaattcctatactagagaagcagaaaaataggtagcctaccatcaaactg
ttcacctttgaaaacaagagtggccagcagaaattaaattataaataagc
agaaaaaaaagaaatataaattagaaggaaatcgactgatttaaaaacag
taaattcaatagagaaaaataatcaatgagataaaacaaacaaacaaaaa
aaatccagttctttgaaaaaaaaatctctaaggtcaataatccctgacca
agctaagaataattatgaaaggacagaaatgactaaaaacagaaatgaag
atgggcctccctgcatggccaaggcacatagagtgataagggaagaaaaa
ttgatatatactccaaaaaatatcatggcaaaatatcagcacagttgttt
aatcccgcataaaagtaatcagtaaataaaaaagtccaattgcgtgagtt
tattatcccaagtattcatagccagttcaccattcagaaagatctagaac
actgtgttatccttatgataaaaaaacaaaacaaaacaaaaaaaaaaaaa
catgatttcccccccccccatggtagttttaaaagcaggtgacaagaccc
tgcacccgtttgtgacttaaaagaaaaagctgtgcaaactaggaactgaa
ggaaacttagacattttaacactgacaaaaatgtagagttactgccatac
ttaataatatgatgtgatacatttgtttatatctaagtctattttattga
aaagttaaaaaaaaaagaaactcaaaactcttctgataaaatctcagata
atgcaaggatgtctcttctcacttttttatatatatattgtactgactaa
tgtaataggcaaggaaaaataaatataaaatagggttggggggagaggaa
agttgcttttattgagatatgatatgtagaaaatgaaactactagcaaaa
ctactctaaaacaaataaataatgattacaaggcaggctgaagggatgac
aagttaacatttttaaagtgtcatctctatataccaggcagtaacagggt
aaaactctaataagaatactatactattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40900411_40900670
seq2: B6Ng01-005G11.b_48_306

seq1  TCTGTTTATATCTATATCCCAGTTTTAAATTGGGTTATTTGGTTTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTATATCTATATCCCAGTTTTAAATTGGGTTATTTGGTTTGTTGA  50

seq1  TGTCTAATTTCTTGAGTTCTTTATATGTTTTGGATATCAGCCCTCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTTCTTGAGTTCTTTATATGTTTTGGATATCAGCCCTCTGTTG  100

seq1  GATGTAGGGTTGGTGAAGATCTTTGCCCAGTCTGTAGGCTGTGGTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGGTTGGTGAAGATCTTTGCCCAGTCTGTAGGCTGTGGTTTTGG  150

seq1  TCTTTGGACAGTGCCATCTGCAAAGATTTTTTATTTTAAAAATATTTAAA  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTTGGACAGTGCCATCTGCAAAGA-TTTTTATTTTAAAAATATTTAAA  199

seq1  AGTTACAACCTTCCCCCAGGTGCTTCTCTCTCTCTCTCTCTCTCTCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAACCTTCCCCCAGGTGCTTCTCTCTCTCTCTCTCTCTCTCTCTC  249

seq1  TCTCTCTCTC  260
      ||||||||||
seq2  TCTCTCTCTC  259

seq1: chr1_41076166_41077246
seq2: B6Ng01-005G11.g_70_1149 (reverse)

seq1  TTAATAGTAATATGTATTTTTATTTGAGTTTCTACCTGTTAACTG-CTGG  49
      |||||||| ||| ||||| ||||| ||||||   |||||| |||| ||||
seq2  TTAATAGT-ATA-GTATTCTTATTAGAGTTTTACCCTGTT-ACTGCCTGG  47

seq1  TATATAGAGATGACACTCTTAAAATGTTAACTTGTCAT-CCTTCAGCCTT  98
      ||||||||||||||||| | |||||||||||||||||| |||||||||| 
seq2  TATATAGAGATGACACTTTAAAAATGTTAACTTGTCATCCCTTCAGCCTG  97

seq1  GCTTGTAATCATTATTTATTTGTTTTAGAGTAGTTTTGCTAGTGGTTTCA  148
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTTGTAATCATTATTTATTTGTTTTAGAGTAGTTTTGCTAGTAGTTTCA  147

seq1  TTTTCTACATATCATATCTCAATAAAGGCAACTTTTCCTCTCCCCC--AA  196
      |||||||||||||||||||||||||| ||||| |||||||||||||  | 
seq2  TTTTCTACATATCATATCTCAATAAAAGCAAC-TTTCCTCTCCCCCCAAC  196

seq1  CCTATTTTATATTTATTTTT-CTTGCCTTATTACATTAGTCAGTACAATA  245
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  CCTATTTTATATTTATTTTTCCTTGCC-TATTACATTAGTCAGTACAATA  245

seq1  TATATATAAAAAAAGTGAGAAGAGACATCCTTGCATTATCTGAGATTTTA  295
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAT-AAAAAAGTGAGAAGAGACATCCTTGCATTATCTGAGATTTTA  294

seq1  TCAGAAGAGTTTTGAGTTTCTTTTTTTTTTAACTTTTCAATAAAATAGAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGTTTTGAGTTTCTTTTTTTTTTAACTTTTCAATAAAATAGAC  344

seq1  TTAGATATAAACAAATGTATCACATCATATTATTAAGTATGGCAGTAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATAAACAAATGTATCACATCATATTATTAAGTATGGCAGTAACT  394

seq1  CTACATTTTTGTCAGTGTTAAAATGTCTAAGTTTCCTTCAGTTCCTAGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTTGTCAGTGTTAAAATGTCTAAGTTTCCTTCAGTTCCTAGTT  444

seq1  TGCACAGCTTTTTCTTTTAAGTCACAAACGGGTGCAGGGTCTTGTCACCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCTTTTTCTTTTAAGTCACAAACGGGTGCAGGGTCTTGTCACCT  494

seq1  GCTTTTAAAACTACCATGGGGGGGGGGGAAATCATGTTTTTTTTTTTTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAAACTACCATGGGGGGGGGGGAAATCATGTTTTTTTTTTTTTG  544

seq1  TTTTGTTTTGTTTTTTTATCATAAGGATAACACAGTGTTCTAGATCTTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTTTTATCATAAGGATAACACAGTGTTCTAGATCTTTC  594

seq1  TGAATGGTGAACTGGCTATGAATACTTGGGATAATAAACTCACGCAATTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTGAACTGGCTATGAATACTTGGGATAATAAACTCACGCAATTG  644

seq1  GACTTTTTTATTTACTGATTACTTTTATGCGGGATTAAACAACTGTGCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTATTTACTGATTACTTTTATGCGGGATTAAACAACTGTGCTG  694

seq1  ATATTTTGCCATGATATTTTTTGGAGTATATATCAATTTTTCTTCCCTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCCATGATATTTTTTGGAGTATATATCAATTTTTCTTCCCTTA  744

seq1  TCACTCTATGTGCCTTGGCCATGCAGGGAGGCCCATCTTCATTTCTGTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTATGTGCCTTGGCCATGCAGGGAGGCCCATCTTCATTTCTGTTT  794

seq1  TTAGTCATTTCTGTCCTTTCATAATTATTCTTAGCTTGGTCAGGGATTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTTCTGTCCTTTCATAATTATTCTTAGCTTGGTCAGGGATTAT  844

seq1  TGACCTTAGAGATTTTTTTTTCAAAGAACTGGATTTTTTTTGTTTGTTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTAGAGATTTTTTTTTCAAAGAACTGGATTTTTTTTGTTTGTTTG  894

seq1  TTTTATCTCATTGATTATTTTTCTCTATTGAATTTACTGTTTTTAAATCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTCATTGATTATTTTTCTCTATTGAATTTACTGTTTTTAAATCA  944

seq1  GTCGATTTCCTTCTAATTTATATTTCTTTTTTTTCTGCTTATTTATAATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATTTCCTTCTAATTTATATTTCTTTTTTTTCTGCTTATTTATAATT  994

seq1  TAATTTCTGCTGGCCACTCTTGTTTTCAAAGGTGAACAGTTTGATGGTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTGCTGGCCACTCTTGTTTTCAAAGGTGAACAGTTTGATGGTAG  1044

seq1  GCTACCTATTTTTCTGCTTCTCTAGTATAGGAATTC  1081
      ||||||||||||||||||||||||||||||||||||
seq2  GCTACCTATTTTTCTGCTTCTCTAGTATAGGAATTC  1080