BAC Information

Click to search

BAC

Clone NameB6Ng01-005I13
Chromosome1 (Build37)
Map Location 192,727,931 - 192,833,909
singlet/doubletdoublet
Overlap geneRps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik
Upstream geneSmyd2, Prox1, LOC100039394, EG666975
Downstream gene1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I13.bB6Ng01-005I13.g
ACCDH842645DH842646
length1,0801,099
definitionDH842645|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I13, 5' end.DH842646|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,832,824 - 192,833,909)(192,727,931 - 192,729,040)
sequence
gaattccaagctcagtacttggctcaaggacttcctaggaccttggaaca
ctggtggagactaatctaacttagctatatgtcaaaatcaatccttaaag
gcacttataataaaacaatactgaaagagagcagacagatccatacacca
gactaacacggggacaggtttggtgcatacgtgctatgggaatgccaagg
tcccaggaggctaagtttccgtgaacttttcgcctcgggactgcgtccag
tttctagacctgtcattcgagtcactagtggagtggatgtagcaggttct
gtggggaaagtgtacttgctttaaaacagcaaactcaataacaattattt
catatcttttattttagatacttggaattttcttcacattggctcaagga
aagatcacaacagactataatagtccagaggcaggaaacattttcctttg
tgcctggatgtttgtaggcataattttaacaggtaagtgctgagtgtgtg
tgccatgttgtctgtattcaggtttgtgcattgctgcttcttggctttgt
gaactctgaggttaaaaattagataagaaggctgggcatagccgggggtg
gtggcccacacttttaatcccagcactcgggaggcagaggcaggcggatt
tctgagttcaaggccagcctggtctacaaagtgagtttcaggacagccag
ggctacacagagaaaccttgtctcgaaaaaccaaaaaaaaaaaaaaggct
gggcatgatggcgcacgcctttcatcacagcacttagaggcaaagacagg
tggatctctgtatctctgtgacttttgaggccagcctggtctacagagtg
agtcccgggacagcaagggcatcggatccctgtcttgaaaagcaataaac
aaaagagataagaatcagactcatttcctcagatgtgagtctatcctttc
attttggtggcctccaaactaatacaattgctatgcatataaaggcaaac
ctggggctatgatagatggaggcctgtaacaaggttcaatttctagctcc
aataagctcaacacccgctagttccgagga
gaattctaaagaatgttccatggcatcaactggcacataaggagaacaac
tgtgagacgcacatatgtcattctcttctgaaacaagagcattctaatcc
tccctactagggaagcaaagatgtctcaaaacccatgagggaaatactat
aaaatctttattttaaggtgtctttcactgtgattttgaattatgagaca
aaaacaaataaatacctagtcagacacatcaagagtctaatgaacttggg
ccaacagtatgaggcaatcaactcaaatacgtgaatcaagccaggtactc
ctgaccagagaggcacctgcagctaagcagatgtccacaccctatctaaa
gacactgagctggggacagccaacaccactgcagaatcaagactgttaaa
tttacagcatctgtttaaacacttggttgggggagaggcaggcaacatag
tgcgtgcgtctagtctcaaacctgagtgggaaccaatcagagtaaatgag
catgcagtgagggaagcttgaccagcgtccctaaatgaagcaaccaagcg
cagacaagccctagggagagagaaccctaccattctaagcaatacatgcc
aggccagtatcagcacagagagggcggcagacggaagcgcagacaactct
gcgaaagaactagctggtcaaaaacttcaaaactaagcagggacactgca
gcagctcatgacgtcagcagctcacgacatcagcgtgccgggccagcaca
cgagtggcactgtgcagagccctaatctattgctacagctgtatcgcttg
ggccttagcgaggtgagagaagtcttgactacagctgaggcaaggtgagg
caagtgagggcccctcagaggcttgctcacaccgccctgcatctctcagc
atgacgatgtgtaactgcggctactggcacgtgctgagagacagtataca
ggtccaacactcagacatgtacccggcagtttcttcacagggtaacgaat
gtttgccgtgaatagctgactaacctctgaacgtcctctggattctccgt
gaatactatctaaaccaaacacagcacgaatactcttatcaagcatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_192832824_192833909
seq2: B6Ng01-005I13.b_46_1125 (reverse)

seq1  TCCTCTGGAACTAGAGGGCTGTGAGCTATTTGGGAGCTGGAAATTGAACC  50
      ||||| |||||||| |||   |||||| | | |||||| |||||||||||
seq2  TCCTC-GGAACTAGCGGGTGTTGAGCT-TATTGGAGCTAGAAATTGAACC  48

seq1  TGGGTCCAGGGCTCCATCTATC-TAGCCCCAGTTTTGCCTTT-TATGCAT  98
      | | | |||| ||||||||||| ||||||||| ||||||||| |||||||
seq2  TTGTTACAGGCCTCCATCTATCATAGCCCCAGGTTTGCCTTTATATGCAT  98

seq1  AGCAATGGTATTAAGTTTGGA-GCCACCAAAATGAAAGGATAGACTCACA  147
      |||||| ||||| |||||||| ||||||||||||||||||||||||||||
seq2  AGCAATTGTATT-AGTTTGGAGGCCACCAAAATGAAAGGATAGACTCACA  147

seq1  TCCTGAGGAAACTGAGTCCTGATTCTTATCTCCTTTTGTTTATTTGCTTT  197
      | ||||||||| ||||| ||||||||||||| |||||||||| |||||||
seq2  T-CTGAGGAAA-TGAGT-CTGATTCTTATCT-CTTTTGTTTA-TTGCTTT  192

seq1  TCAAGACAGGGATCCGATGCCCTTGCTGTCCCGGAACTCACTCTGTAGAC  247
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAAGACAGGGATCCGATGCCCTTGCTGTCCCGGGACTCACTCTGTAGAC  242

seq1  CAGGCTGGCCTCAAAAGTCACAGAGATACAGAGATCCACCTGTCTTTGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCAAAAGTCACAGAGATACAGAGATCCACCTGTCTTTGCC  292

seq1  TCCTAAGTGCTGTGATGAAAGGCGTGCGCCATCATGCCCAGCCTTTTTTT  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTAAGTGCTGTGATGAAAGGCGTGCGCCATCATGCCCAGCCTTTTTTT  341

seq1  TTTTTTTGGTTTTTCGAGACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTTTTTCGAGACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCT  391

seq1  GAAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGC  441

seq1  CTCTGCCTCCCGAGTGCTGGGATTAAAAGTGTGGGCCACCACCCCCGGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCGAGTGCTGGGATTAAAAGTGTGGGCCACCACCCCCGGCT  491

seq1  ATGCCCAGCCTTCTTATCTAATTTTTAACCTCAGAGTTCACAAAGCCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGCCTTCTTATCTAATTTTTAACCTCAGAGTTCACAAAGCCAAG  541

seq1  AAGCAGCAATGCACAAACCTGAATACAGACAACATGGCACACACACTCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAATGCACAAACCTGAATACAGACAACATGGCACACACACTCAG  591

seq1  CACTTACCTGTTAAAATTATGCCTACAAACATCCAGGCACAAAGGAAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCTGTTAAAATTATGCCTACAAACATCCAGGCACAAAGGAAAAT  641

seq1  GTTTCCTGCCTCTGGACTATTATAGTCTGTTGTGATCTTTCCTTGAGCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGCCTCTGGACTATTATAGTCTGTTGTGATCTTTCCTTGAGCCA  691

seq1  ATGTGAAGAAAATTCCAAGTATCTAAAATAAAAGATATGAAATAATTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGAAAATTCCAAGTATCTAAAATAAAAGATATGAAATAATTGTT  741

seq1  ATTGAGTTTGCTGTTTTAAAGCAAGTACACTTTCCCCACAGAACCTGCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTTGCTGTTTTAAAGCAAGTACACTTTCCCCACAGAACCTGCTA  791

seq1  CATCCACTCCACTAGTGACTCGAATGACAGGTCTAGAAACTGGACGCAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTCCACTAGTGACTCGAATGACAGGTCTAGAAACTGGACGCAGT  841

seq1  CCCGAGGCGAAAAGTTCACGGAAACTTAGCCTCCTGGGACCTTGGCATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGGCGAAAAGTTCACGGAAACTTAGCCTCCTGGGACCTTGGCATTC  891

seq1  CCATAGCACGTATGCACCAAACCTGTCCCCGTGTTAGTCTGGTGTATGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCACGTATGCACCAAACCTGTCCCCGTGTTAGTCTGGTGTATGGA  941

seq1  TCTGTCTGCTCTCTTTCAGTATTGTTTTATTATAAGTGCCTTTAAGGATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGCTCTCTTTCAGTATTGTTTTATTATAAGTGCCTTTAAGGATT  991

seq1  GATTTTGACATATAGCTAAGTTAGATTAGTCTCCACCAGTGTTCCAAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGACATATAGCTAAGTTAGATTAGTCTCCACCAGTGTTCCAAGGT  1041

seq1  CCTAGGAAGTCCTTGAGCCAAGTACTGAGCTTGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAAGTCCTTGAGCCAAGTACTGAGCTTGGAATTC  1080

seq1: chr1_192727931_192729040
seq2: B6Ng01-005I13.g_71_1169

seq1  GAATTCTAAAGAATGTTCCATGGCATCAACTGGCACATAAGGAGAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGAATGTTCCATGGCATCAACTGGCACATAAGGAGAACAAC  50

seq1  TGTGAGACGCACATATGTCATTCTCTTCTGAAACAAGAGCATTCTAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACGCACATATGTCATTCTCTTCTGAAACAAGAGCATTCTAATCC  100

seq1  TCCCTACTAGGGAAGCAAAGATGTCTCAAAACCCATGAGGGAAATACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTAGGGAAGCAAAGATGTCTCAAAACCCATGAGGGAAATACTAT  150

seq1  AAAATCTTTATTTTAAGGTGTCTTTCACTGTGATTTTGAATTATGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTATTTTAAGGTGTCTTTCACTGTGATTTTGAATTATGAGACA  200

seq1  AAAACAAATAAATACCTAGTCAGACACATCAAGAGTCTAATGAACTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATAAATACCTAGTCAGACACATCAAGAGTCTAATGAACTTGGG  250

seq1  CCAACAGTATGAGGCAATCAACTCAAATACGTGAATCAAGCCAGGTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTATGAGGCAATCAACTCAAATACGTGAATCAAGCCAGGTACTC  300

seq1  CTGACCAGAGAGGCACCTGCAGCTAAGCAGATGTCCACACCCTATCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGAGAGGCACCTGCAGCTAAGCAGATGTCCACACCCTATCTAAA  350

seq1  GACACTGAGCTGGGGACAGCCAACACCACTGCAGAATCAAGACTGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGAGCTGGGGACAGCCAACACCACTGCAGAATCAAGACTGTTAAA  400

seq1  TTTACAGCATCTGTTTAAACACTTGGTTGGGGGAGAGGCAGGCAACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCATCTGTTTAAACACTTGGTTGGGGGAGAGGCAGGCAACATAG  450

seq1  TGCGTGCGTCTAGTCTCAAACCTGAGTGGGAACCAATCAGAGTAAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGCGTCTAGTCTCAAACCTGAGTGGGAACCAATCAGAGTAAATGAG  500

seq1  CATGCAGTGAGGGAAGCTTGACCAGCGTCCCTAAATGAAGCAACCAAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTGAGGGAAGCTTGACCAGCGTCCCTAAATGAAGCAACCAAGCG  550

seq1  CAGACAAGCCCTAGGGAGAGAGAACCCTACCATTCTAAGCAATACATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGCCCTAGGGAGAGAGAACCCTACCATTCTAAGCAATACATGCC  600

seq1  AGGCCAGTATCAGCACAGAGAGGGCGGCAGACGGAAGCGCAGACAACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTATCAGCACAGAGAGGGCGGCAGACGGAAGCGCAGACAACTCT  650

seq1  GCGAAAGAACTAGCTGGTCAAAAACTTCAAAACTAAGCAGGGACACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAAGAACTAGCTGGTCAAAAACTTCAAAACTAAGCAGGGACACTGCA  700

seq1  GCAGCTCATGACGTCAGCAGCTCACGACATCAGCGTGCCGGGCCAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCATGACGTCAGCAGCTCACGACATCAGCGTGCCGGGCCAGCACA  750

seq1  CGAGTGGCACTGTGCAGAGCCCTAATCTATTGCTACAGCTGTATCGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGCACTGTGCAGAGCCCTAATCTATTGCTACAGCTGTATCGCTTG  800

seq1  GGCCTTAGCGAGGTGAGAGAAGCCTTGACTACAGCTGAGGC-AGGTGAGG  849
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GGCCTTAGCGAGGTGAGAGAAGTCTTGACTACAGCTGAGGCAAGGTGAGG  850

seq1  CAGGTGAGGGCCCCTCAGAGGCTTGCTCACACCGCCCTGCACCTCTCAGC  899
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAGTGAGGGCCCCTCAGAGGCTTGCTCACACCGCCCTGCATCTCTCAGC  900

seq1  AGGACGATGTGTAACTGCGGCTACTGGCACGTAGCTGAAGAGACAGTTAT  949
      | |||||||||||||||||||||||||||||| |||| |||||||| |||
seq2  ATGACGATGTGTAACTGCGGCTACTGGCACGT-GCTG-AGAGACAG-TAT  947

seq1  ACAAGTACAAACACTCAGACAAGTAACCCGGGCAGTTTCTTCAACAGGGT  999
      ||| || | |||||||||||| |||  || |||||||||||| |||||||
seq2  ACAGGT-CCAACACTCAGACATGTA--CCCGGCAGTTTCTTC-ACAGGGT  993

seq1  AAACAGAATGTTCG-CGTGGATAAGCAGACTACCTCCTGGACGTCCTCTG  1048
      ||   ||||||| | |||| || ||| ||||| |  ||| ||||||||||
seq2  AA--CGAATGTTTGCCGTGAAT-AGCTGACTAACCTCTGAACGTCCTCTG  1040

seq1  GATTTCTCCGTGAA-ACAACCTAAAACCAAACACAGACAGAAATACTCGT  1097
      || ||||||||||| || | || ||||||||||||| ||  ||||||| |
seq2  GA-TTCTCCGTGAATACTATCT-AAACCAAACACAG-CACGAATACTC-T  1086

seq1  TATCAAGCAAGCT  1110
      ||||||||| |||
seq2  TATCAAGCATGCT  1099