BAC Information

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BAC

Clone NameB6Ng01-005I22
Chromosome1 (Build37)
Map Location 112,350,321 - 112,390,833
singlet/doubletdoublet
Overlap geneLOC100041429
Upstream geneEG666508, Cdh7
Downstream geneEG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I22.bB6Ng01-005I22.g
ACCDH842662DH842663
length9781,078
definitionDH842662|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I22, 5' end.DH842663|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,389,850 - 112,390,833)(112,350,321 - 112,351,416)
sequence
gaattcatgaaatttttaggcaaatggatggacctggagagcatcattct
gagtgaggtaacgcagttacaaaagaacacacatgatatgtactcactga
taagtggatattagcccataaacttagaacatccaagacaaaatttgatt
taggggactttcaggatagtatttgaaatgcaaatgaagaaaatattaat
taaaaaaataaaatagttatgaaagaattaaaaaagaaaagaaagaatca
atttacctaagaaatttgacttttaaataggtatataaggaaagaataat
aaagtcttaattgcttagttttctgaatgtcatagctaccattctaagtg
tgctcttattattctgtattcaaatactggactctatttcaagatttagt
gttttcccactatagtgaaaagtttcaacctttttttatagcatgatctg
catcttctgtagtttatatcagaaaccaaattactaagtagatcaaaaag
agtttcacagtatgtttaatccctaattaatttaataataataacctcag
tgttatgaaagtcacaggtagtaaaatcaaatgttacattaaaatgcaac
taagaaacataatggaaaattttaaatcaatatagatgctctgattttat
gcctacttgtatataaattacacaagtaaaagatatcttccctaaaaaca
aatgattatgtgacttattaaaaatgttactctaagttggatcatttctt
ctacagttctcttacttttaaatcactttataattggctttaagaatgat
aacatctctcaaactgtataaaaactgggaatttaatagtaatttgattt
tattataaaattatatgaaaccatgaaagtatgcagagggctatggctta
tagagcatattctacgattgttttaaatattttacgtgtattataaatat
atactgtgtgatggaattagtttcataa
gaattcactcataggcaacaaaatcttcaggtataaaatttaccattaca
atacattgcaacaggcaatatattttatgattgagggttaccacaacatg
aggaacttcattaaaagatcactggattaggaagcttgtacacagttgct
tgatactaaagttttatattattcactataactaataaataattaatcag
gtgtttgtttagagaaataagtccatacaacagattaaagacagaagttg
agtatgcttataggcagactaggaaaaattaattttcagaattcaatgag
aaagatatccatcttctgttctcctggataagtccacatattactattaa
aatgctatagaaagaccatagaatttaaattgaaatatgcaaagaaaaac
tttgaagttttaacaaaattttagagtgaacacacacaaaatatggtaat
atgacattttacataaaagtgaaacatgtatcaactataattataggatg
attaaatgggacttgtcaaaattaaaggcttatgtgtactgaaacataac
attaagtgggggcaaatgccagctgaagactagaaaatttaggtgaaagt
atgtgtattaatgtctcatatgcataataaaaagcatggcacaggtaatg
ccactgatgattagcaaaatatgggagaatagtctttaaaaatatcaaca
tcaaatacaaatgaaatgtctcatttagtatattcattttgtgccatctt
taaatcacattaaaacatgaatccaataataaaaagaattcttaatgtct
ttctctgtcaaactaaaatgtcctacacagtctaaaacatagacatagca
tatacatttttattgttcttttattgaaactagtatttttcattcactgt
attctgattacaattttccctctctcatctcatttgaaatctttcacttt
cttctatataccgtttctctttaaaacttacaggtatctaagatgatcct
taaagaaatagataaacaaacagcaaaatacatatactttatcaaaatga
gaattattagagacaagaaagtactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112389850_112390833
seq2: B6Ng01-005I22.b_42_1019 (reverse)

seq1  TTATGAAAACTAATTTCAATCACACAGTATATATTTTATAATATATGTAA  50
      ||||| ||||||| ||| ||||||||||||||| ||||||||| | ||||
seq2  TTATG-AAACTAA-TTCCATCACACAGTATATA-TTTATAATACACGTAA  47

seq1  AAATTATTTTAAAACAAATCTTAG-ATATGCTCTTATAAGCCATAGCCCT  99
      ||  || |||||||| |||| ||| |||||||| ||||||||||||||||
seq2  AA--TA-TTTAAAAC-AATCGTAGAATATGCTC-TATAAGCCATAGCCCT  92

seq1  CTGCATACTTTCTTGGTTTCATAT-ATTTTATATTAAAATCAAATTACTA  148
      |||||||||||| ||||||||||| |||||||| ||||||||||||||||
seq2  CTGCATACTTTCATGGTTTCATATAATTTTATAATAAAATCAAATTACTA  142

seq1  TTTAATTCCCAGTTTTTATACAGTTTGAGAGATGTTATCATTCTTAAAGC  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCCCAGTTTTTATACAGTTTGAGAGATGTTATCATTCTTAAAGC  192

seq1  CAATTATAAAGTGATTTAAAAGTAAGAGAACTGTAGAAGAAATGATCCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAAAGTGATTTAAAAGTAAGAGAACTGTAGAAGAAATGATCCAA  242

seq1  CTTAGAGTAACATTTTTAATAAGTCACATAATCATTTGTTTTTAGGGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGTAACATTTTTAATAAGTCACATAATCATTTGTTTTTAGGGAAG  292

seq1  ATATCTTTTACTTGTGTAATTTATATACAAGTAGGCATAAAATCAGAGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTACTTGTGTAATTTATATACAAGTAGGCATAAAATCAGAGCA  342

seq1  TCTATATTGATTTAAAATTTTCCATTATGTTTCTTAGTTGCATTTTAATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGATTTAAAATTTTCCATTATGTTTCTTAGTTGCATTTTAATG  392

seq1  TAACATTTGATTTTACTACCTGTGACTTTCATAACACTGAGGTTATTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGATTTTACTACCTGTGACTTTCATAACACTGAGGTTATTATT  442

seq1  ATTAAATTAATTAGGGATTAAACATACTGTGAAACTCTTTTTGATCTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTAATTAGGGATTAAACATACTGTGAAACTCTTTTTGATCTACT  492

seq1  TAGTAATTTGGTTTCTGATATAAACTACAGAAGATGCAGATCATGCTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTTGGTTTCTGATATAAACTACAGAAGATGCAGATCATGCTATA  542

seq1  AAAAAAGGTTGAAACTTTTCACTATAGTGGGAAAACACTAAATCTTGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTTGAAACTTTTCACTATAGTGGGAAAACACTAAATCTTGAAA  592

seq1  TAGAGTCCAGTATTTGAATACAGAATAATAAGAGCACACTTAGAATGGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCAGTATTTGAATACAGAATAATAAGAGCACACTTAGAATGGTA  642

seq1  GCTATGACATTCAGAAAACTAAGCAATTAAGACTTTATTATTCTTTCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACATTCAGAAAACTAAGCAATTAAGACTTTATTATTCTTTCCTT  692

seq1  ATATACCTATTTAAAAGTCAAATTTCTTAGGTAAATTGATTCTTTCTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTATTTAAAAGTCAAATTTCTTAGGTAAATTGATTCTTTCTTTT  742

seq1  CTTTTTTAATTCTTTCATAACTATTTTATTTTTTTAATTAATATTTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAATTCTTTCATAACTATTTTATTTTTTTAATTAATATTTTCTT  792

seq1  CATTTGCATTTCAAATACTATCCTGAAAGTCCCCTAAATCAAATTTTGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATTTCAAATACTATCCTGAAAGTCCCCTAAATCAAATTTTGTC  842

seq1  TTGGATGTTCTAAGTTTATGGGCTAATATCCACTTATCAGTGAGTACATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTTCTAAGTTTATGGGCTAATATCCACTTATCAGTGAGTACATA  892

seq1  TCATGTGTGTTCTTTTGTAACTGCGTTACCTCACTCAGAATGATGCTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGTTCTTTTGTAACTGCGTTACCTCACTCAGAATGATGCTCTC  942

seq1  CAGGTCCATCCATTTGCCTAAAAATTTCATGAATTC  984
      ||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCATCCATTTGCCTAAAAATTTCATGAATTC  978

seq1: chr1_112350321_112351416
seq2: B6Ng01-005I22.g_68_1145

seq1  GAATTCACTCATAGGCAACAAAATCTTCAGGTATAAAATTTACCATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATAGGCAACAAAATCTTCAGGTATAAAATTTACCATTACA  50

seq1  ATACATTGCAACAGGCAATATATTTTATGATTGAGGGTTACCACAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGCAACAGGCAATATATTTTATGATTGAGGGTTACCACAACATG  100

seq1  AGGAACTTCATTAAAAGATCACTGGATTAGGAAGCTTGTACACAGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTCATTAAAAGATCACTGGATTAGGAAGCTTGTACACAGTTGCT  150

seq1  TGATACTAAAGTTTTATATTATTCACTATAACTAATAAATAATTAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTAAAGTTTTATATTATTCACTATAACTAATAAATAATTAATCAG  200

seq1  GTGTTTGTTTAGAGAAATAAGTCCATACAACAGATTAAAGACAGAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTTAGAGAAATAAGTCCATACAACAGATTAAAGACAGAAGTTG  250

seq1  AGTATGCTTATAGGCAGACTAGGAAAAATTAATTTTCAGAATTCAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTTATAGGCAGACTAGGAAAAATTAATTTTCAGAATTCAATGAG  300

seq1  AAAGATATCCATCTTCTGTTCTCCTGGATAAGTCCACATATTACTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATCCATCTTCTGTTCTCCTGGATAAGTCCACATATTACTATTAA  350

seq1  AATGCTATAGAAAGACCATAGAATTTAAATTGAAATATGCAAAGAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATAGAAAGACCATAGAATTTAAATTGAAATATGCAAAGAAAAAC  400

seq1  TTTGAAGTTTTAACAAAATTTTAGAGTGAACACACACAAAATATGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTTTTAACAAAATTTTAGAGTGAACACACACAAAATATGGTAAT  450

seq1  ATGACATTTTACATAAAAGTGAAACATGTATCAACTATAATTATAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTTTACATAAAAGTGAAACATGTATCAACTATAATTATAGGATG  500

seq1  ATTAAATGGGACTTGTCAAAATTAAAGGCTTATGTGTACTGAAACATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGGACTTGTCAAAATTAAAGGCTTATGTGTACTGAAACATAAC  550

seq1  ATTAAGTGGGGGCAAATGCCAGCTGAAGACTAGAAAATTTAGGTGAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGGGGGCAAATGCCAGCTGAAGACTAGAAAATTTAGGTGAAAGT  600

seq1  ATGTGTATTAATGTCTCATATGCATAATAAAAAGCATGGCACAGGTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATTAATGTCTCATATGCATAATAAAAAGCATGGCACAGGTAATG  650

seq1  CCACTGATGATTAGCAAAATATGGGAGAATAGTCTTTAAAAATATCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATGATTAGCAAAATATGGGAGAATAGTCTTTAAAAATATCAACA  700

seq1  TCAAATACAAATGAAATGTCTCATTTAGTATATTCATTTTGTGCCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACAAATGAAATGTCTCATTTAGTATATTCATTTTGTGCCATCTT  750

seq1  TAAATCACATTAAAACATGAATCCAATAATAAAAAGAATTCTTAATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACATTAAAACATGAATCCAATAATAAAAAGAATTCTTAATGTCT  800

seq1  TTCTCTGTCAAACTAAAATGTCCTACACAGTCTAAAACATAGACATAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCAAACTAAAATGTCCTACACAGTCTAAAACATAGACATAGCA  850

seq1  TATACATTTTTATTGTTCTTTTATTGAAACTAGTATTTTTCATTCACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTTATTGTTCTTTTATTGAAACTAGTATTTTTCATTCACTGT  900

seq1  ATTCTGATTACAATTTTCCCTCTCTCATCTCATTTGAAATCTTTTCACTT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCTGATTACAATTTTCCCTCTCTCATCTCATTTGAAATC-TTTCACTT  949

seq1  TCTTCTATATACCGTTTCTCCTTTAAAAACTTACAGGTATCTAAAGAATG  1000
      ||||||||||||||||||||  || |||||||||||||||||||   |||
seq2  TCTTCTATATACCGTTTCTC--TTTAAAACTTACAGGTATCTAA--GATG  995

seq1  ATCCTAAAAGAAAATAAGATAAAACAAACAAGCAAAAATACAATAATACT  1050
      ||||| |||||||   |||| |||||||| ||| ||||||||   |||||
seq2  ATCCTTAAAGAAA--TAGAT-AAACAAAC-AGC-AAAATACA--TATACT  1038

seq1  ATTAACCAAAAATGAGAATTATTAGAGACAAAGAAAAGTACATGAA  1096
       ||| |  |||||||||||||||||||||||   ||||||| ||||
seq2  -TTATC--AAAATGAGAATTATTAGAGACAA--GAAAGTAC-TGAA  1078