BAC Information

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BAC

Clone NameB6Ng01-005K16
Chromosome1 (Build37)
Map Location 102,254,136 - 102,387,939
singlet/doubletdoublet
Overlap geneC230078M14Rik
Upstream geneLOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005K16.bB6Ng01-005K16.g
ACCDH842740DH842741
length1,0401,067
definitionDH842740|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K16, 5' end.DH842741|Mus musculus domesticus DNA, BAC clone: B6Ng01-005K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,254,136 - 102,255,120)(102,386,875 - 102,387,939)
sequence
gaattcactcggacaactggatccttctacggcaaagcttttattgcttc
aacataaggaagacccgaacctggaaaatggtgctgcttagatagcccgc
agcttgacgtttcagcacctgatgtggtgtgacagcacctgattagttgt
ttgcccatcaccccattactacgcccgagatggacagtgactgggcgtga
atttactcttgcacttgctcctaaggcttgtttactagttaggcgcagtg
gaagccagcgccatcttataatggcgattgctcacagcacggctctccac
aaatcagctgcagtatttggtaatctgttatcttagtggtttcatttatc
agcctttaactattttttttttagttaaatctctttttatatgcaaactc
gtatgtgtgcattaaatttccccctttttaatgaagggtatgtgaatgcc
cctttctttatattgaagtagaccatcttcgcattcaaaaagtatccaaa
ttctattattcttctgaggtagtggttatgaaagttcagttttcatttgg
gctggtacaatacgcaaacatgtctattctctgaatacacatgaggcact
ggcccacttaaagtgactttttaaaaattatttatgaaggaaggattttt
taaactgaaaagtttcccttttttctattaccctgcctaaaactatatca
aatcattctattatgcattatttaaactacaaattttgcattgatgcaca
taaaaataatgtatacacttaaaattgtttttagctgagtcaactcaatc
agctgcagtatttggtaatctgttatcaagttgagtgtctgtctttgact
cttaatgggtttcatttatcagcctttaactattttttttagtaaaatct
cttttatatgcaaactcgtatggtgtgcattaaaatatagagaaggtggg
aagggattattgaggaaagacagaataaatgcaaaagttggaaaagaaga
gttaggagggaaaagatgaaaaggagagactatttgtaca
gaattccctaaatgtcctctctggcagagttcattccattgtagggaatt
tgtttatttctttgtgtcgttgtttttatgagacaatcttgtatagctca
ggatagcctcaaaatcactatagccttggacatgtgattctcttcccttt
ccttcatgacgaatattggaattacatgtgtgtgctaccattcactgttt
atttgaagttgggaatgaaactaagggcatttgtacataccacaaagccc
tttaacatctgatgtacatcccaccccattaactcatatttttactaata
gtctatgtctacaatatgactcataaacacgtatccaaataaacactata
ggatgacaaatctcccccagagcaatgtgaatctgttctttgaaacatag
agctactgttatataacagtcttgtggaagacagaaatgtaggcaaaata
agacacaagttggacactgaaatactgaaatcaggatgattcaagaaact
tttaaccaaattactgagtttcttacatgttttttgtgtgtgtgtgtgtg
tgtgcttgacatgcaatttagaataagtcagttaagaagagaaccctaga
cagtactttgaaccaaactgcaatcaatgaacacaaagtgtaggtgtttt
tgttttttcatgggtcatgttggctaggtgttaattatctaagaaatcaa
agtgggtactgagagattaattacttgacactgcattaaccaaagaacaa
atcagcaagacatatttatattccacacaaaagatacaaaatctttcttt
tattaaatatacaatatttatgtgtaagtcttattttctgtacagcaaaa
aaccatagaaaaataaagaaatgaacgctaactttacattcactatacag
tgtattaagacacattacatggtctacaaagcatacatggtatgtgcaac
atcatatgggtctagggattctgttacaggacaaaccccaaaaaaacagt
agtcgcatgtttaccccaaaggaaataaatggtcttttttgcttctggtt
ggggctttaaatcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102254136_102255120
seq2: B6Ng01-005K16.b_96_1081

seq1  TAAGGAAGACCCGAACCTGGAAAATGGTGCTGCTTAGATAGCCCGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGACCCGAACCTGGAAAATGGTGCTGCTTAGATAGCCCGCAGCT  50

seq1  TGACGTTTCAGCACCTGATGTGGTGTGACAGCACCTGATTAGTTGTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTTCAGCACCTGATGTGGTGTGACAGCACCTGATTAGTTGTTTGC  100

seq1  CCATCACCCCATTACTACGCCCGAGATGGACAGTGACTGGGCGTGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACCCCATTACTACGCCCGAGATGGACAGTGACTGGGCGTGAATTT  150

seq1  ACTCTTGCACTTGCTCCTAAGGCTTGTTTACTAGTTAGGCGCAGTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCACTTGCTCCTAAGGCTTGTTTACTAGTTAGGCGCAGTGGAAG  200

seq1  CCAGCGCCATCTTATAATGGCGATTGCTCACAGCACGGCTCTCCACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCCATCTTATAATGGCGATTGCTCACAGCACGGCTCTCCACAAAT  250

seq1  CAGCTGCAGTATTTGGTAATCTGTTATCTTAGTGGTTTCATTTATCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGTATTTGGTAATCTGTTATCTTAGTGGTTTCATTTATCAGCC  300

seq1  TTTAACTATTTTTTTTTTAGTTAAATCTCTTTTTATATGCAAACTCGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTATTTTTTTTTTAGTTAAATCTCTTTTTATATGCAAACTCGTAT  350

seq1  GTGTGCATTAAATTTCCCCCTTTTTAATGAAGGGTATGTGAATGCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATTAAATTTCCCCCTTTTTAATGAAGGGTATGTGAATGCCCCTT  400

seq1  TCTTTATATTGAAGTAGACCATCTTCGCATTCAAAAAGTATCCAAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTGAAGTAGACCATCTTCGCATTCAAAAAGTATCCAAATTCT  450

seq1  ATTATTCTTCTGAGGTAGTGGTTATGAAAGTTCAGTTTTCATTTGGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTCTGAGGTAGTGGTTATGAAAGTTCAGTTTTCATTTGGGCTG  500

seq1  GTACAATACGCAAACATGTCTATTCTCTGAATACACATGAGGCACTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATACGCAAACATGTCTATTCTCTGAATACACATGAGGCACTGGCC  550

seq1  CACTTAAAGTGACTTTTTAAAAATTATTTATGAAGGAAGGATTTTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAGTGACTTTTTAAAAATTATTTATGAAGGAAGGATTTTTTAAA  600

seq1  CTGAAAAGTTTCCCTTTTTTCTATTACCCTGCCTAAAACTATATCAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTTTCCCTTTTTTCTATTACCCTGCCTAAAACTATATCAAATC  650

seq1  ATTCTATTATGCATTATTTAAACTACAAATTTTGCATTGATGCACATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTATGCATTATTTAAACTACAAATTTTGCATTGATGCACATAAA  700

seq1  AATAATGTATACACTTAAAATTGTTTTTAGCTGAGTCAACTCAATCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTATACACTTAAAATTGTTTTTAGCTGAGTCAACTCAATCAGCT  750

seq1  GCAGTATTTGGTAATCTGTTATCAAGTTGAGTGTCTGTCTTTGACTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTTGGTAATCTGTTATCAAGTTGAGTGTCTGTCTTTGACTCTTA  800

seq1  AT-GGTTTCATTTATCAGCCTTTAACTATTTTTTTTAGTAAAATCTCTTT  849
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGGTTTCATTTATCAGCCTTTAACTATTTTTTTTAGTAAAATCTC-TT  849

seq1  TTATATGCAAACTCGTAT-GTGTGCATTAAAATATAGAGAAAGTTGGAAG  898
      |||||||||||||||||| |||||||||||||||||||||| || |||||
seq2  TTATATGCAAACTCGTATGGTGTGCATTAAAATATAGAGAAGGTGGGAAG  899

seq1  GGATTAATGAGGAAAGACAGAATAAAATGCAGAAAGTTTGGAAAAG-AGA  947
      |||||| |||||||||||||||| ||||||| |||| ||||||||| |||
seq2  GGATTATTGAGGAAAGACAGAAT-AAATGCA-AAAG-TTGGAAAAGAAGA  946

seq1  GTTAGGAGGG-AGAGATGAGAA-GAGAGACTATATGTACA  985
      |||||||||| | |||||| || |||||||||| ||||||
seq2  GTTAGGAGGGAAAAGATGAAAAGGAGAGACTATTTGTACA  986

seq1: chr1_102386875_102387939
seq2: B6Ng01-005K16.g_69_1135 (reverse)

seq1  CTTTGA-TTAAAGCAC--AACAGAAGCAAAAAAAGACCATTTATTTCCTT  47
      |||||| ||||||| |  | ||||||| ||||||||||||||||||||||
seq2  CTTTGATTTAAAGCCCCAACCAGAAGC-AAAAAAGACCATTTATTTCCTT  49

seq1  TGGGGTTAACATGAGACTACTTGTTTTTTGGGGTTTGTTCCTGTAACAGA  97
      |||||| |||||| |||||||  |||||||||||||| ||||||||||||
seq2  TGGGGTAAACATGCGACTACTGTTTTTTTGGGGTTTG-TCCTGTAACAGA  98

seq1  ATCCCTAGACCCATATGATGTTGCCACATTCCATGTCTGCTTTGTAGACC  147
      ||||||||||||||||||||||| ||||| |||||| |||||||||||||
seq2  ATCCCTAGACCCATATGATGTTG-CACATACCATGTATGCTTTGTAGACC  147

seq1  ATGTAATATGTCTTAATACACTGTATAGTGAATGTTAAAGTTAGCCTTCA  197
      ||||||| |||||||||||||||||||||||||| |||||||||| ||| 
seq2  ATGTAATGTGTCTTAATACACTGTATAGTGAATG-TAAAGTTAGCGTTC-  195

seq1  ATTTCTTTA-TTTTCTATGGTTTTTTGCTGTACAG-AAATAAGACTTACA  245
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTCTTTATTTTTCTATGGTTTTTTGCTGTACAGAAAATAAGACTTACA  245

seq1  CATAAATATTGTATATTTAAT-AAAGAAAGATTTTGTATCTTTTGTGTGG  294
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATAAATATTGTATATTTAATAAAAGAAAGATTTTGTATCTTTTGTGTGG  295

seq1  AATATAAATATGTCTTGCTGATTTGTTCTTTGGTTAATGCAGTGTCAAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATGTCTTGCTGATTTGTTCTTTGGTTAATGCAGTGTCAAGT  345

seq1  AATTAATCTCTCAGTACCCACTTTGATTTCTTAGATAATTAACACCTAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCTCTCAGTACCCACTTTGATTTCTTAGATAATTAACACCTAGC  395

seq1  CAACATGACCCATGAAAAAAC-AAAACACCTACACTTTGTGTTCATTGAT  443
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAACATGACCCATGAAAAAACAAAAACACCTACACTTTGTGTTCATTGAT  445

seq1  TGCAGTTTGGTTCAAAGTACTGTCTAGGGTTCTCTTCTTAACTGACTTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTGGTTCAAAGTACTGTCTAGGGTTCTCTTCTTAACTGACTTAT  495

seq1  TCTAAATTGCATGTCAAGCACACACACACACACACAAAAAAAACATGTAA  543
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAAATTGCATGTCAAGCACACACACACACACACACAAAAAACATGTAA  545

seq1  GAAACTCAGTAATTTGGTTAAAAGTTTCTTGAATCATCCTGATTTCAGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGTAATTTGGTTAAAAGTTTCTTGAATCATCCTGATTTCAGTA  595

seq1  TTTCAGTGTCCAACTTGTGTCTTATTTTGCCTACATTTCTGTCTTCCACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTCCAACTTGTGTCTTATTTTGCCTACATTTCTGTCTTCCACA  645

seq1  AGACTGTTATATAACAGTAGCTCTATGTTTCAAAGAACAGATTCACATTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTATATAACAGTAGCTCTATGTTTCAAAGAACAGATTCACATTG  695

seq1  CTCTGGGGGAGATTTGTCATCCTATAGTGTTTATTTGGATACGTGTTTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGGAGATTTGTCATCCTATAGTGTTTATTTGGATACGTGTTTAT  745

seq1  GAGTCATATTGTAGACATAGACTATTAGTAAAAATATGAGTTAATGGGGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATATTGTAGACATAGACTATTAGTAAAAATATGAGTTAATGGGGT  795

seq1  GGGATGTACATCAGATGTTAAAGGGCTTTGTGGTATGTACAAATGCCCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTACATCAGATGTTAAAGGGCTTTGTGGTATGTACAAATGCCCTT  845

seq1  AGTTTCATTCCCAACTTCAAATAAACAGTGAATGGTAGCACACACATGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATTCCCAACTTCAAATAAACAGTGAATGGTAGCACACACATGTA  895

seq1  ATTCCAATATTCGTCATGAAGGAAAGGGAAGAGAATCACATGTCCAAGGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATATTCGTCATGAAGGAAAGGGAAGAGAATCACATGTCCAAGGC  945

seq1  TATAGTGATTTTGAGGCTATCCTGAGCTATACAAGATTGTCTCATAAAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGATTTTGAGGCTATCCTGAGCTATACAAGATTGTCTCATAAAAA  995

seq1  CAACGACACAAAGAAATAAACAAATTCCCTACAATGGAATGAACTCTGCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACACAAAGAAATAAACAAATTCCCTACAATGGAATGAACTCTGCC  1045

seq1  AGAGAGGACATTTAGGGAATTC  1065
      ||||||||||||||||||||||
seq2  AGAGAGGACATTTAGGGAATTC  1067