BAC Information

Click to search

BAC

Clone NameB6Ng01-005L02
Chromosome1 (Build37)
Map Location 20,813,826 - 20,917,605
singlet/doubletdoublet
Overlap genePaqr8
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream geneEfhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L02.bB6Ng01-005L02.g
ACCDH842760DH842761
length1,095973
definitionDH842760|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L02, 5' end.DH842761|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,916,516 - 20,917,605)(20,813,826 - 20,814,802)
sequence
gaattctccagcccaaatcactagttagcccaaaatcaagtgtagagtgg
agtgaagctcaaacaaatctctatggaacagactagtgtaggccagtcat
gaggaacatggattggtgttaggtctagaaggatacaaaggaacgaaata
tgaatggggggatgctgtggcttcttggtgggtccatagctgggggacta
tttgggagtaacacaagagagaatggggtaagtgcagtggtatcagtaag
agatgacgttcaatattatagaaggaaaatggagggtgtgccaggaggga
tggcacaggctaatagacccaggcagcatctggaaagcagaggggttgag
ggttcgagaacacacttgaccgcattgtgagacgtcgtctcacaacagca
agagaagtaagtgcaggaaggaagcagtactgtccccttccagcaggttc
caatgcttatctgccctgagtatcaaagattcccactgtcactctcggtt
cttttctctcaccatccccgccaactatgggagacccagaagccacctgg
aacatcttcatccctcctcccaccccgattctttttccaggcccttcagc
cactatctagaccaggagattcccaaacattcctttggccagagcgtccc
tgagattagggtttttttaaataaccgactgctctaaaagtgtccagctg
aatgtggcataggcagttcaaagtcactgtctttcaaacatcttcagtcc
agacttgctccttcccctgcatctcaggacatccaggcctacaggcttta
gcacatcatctctagaatccatgtgctctttctatttatgcgttctctct
ttaactcacaactctaacaataacttccactatagcaacatcagccccat
gagtatcctttctcctggttagtaacctcctctgcctcacaacccctcaa
ccttagtgtggtcttccacccactttcctggtgatagttaaaatggaact
ctgtcatcttgttcctccgcaaatgccactggctttacatgcaaactcta
tgccttgcctttagactgggtcttttctcttgttagaactagctt
gaattctttgatgagcctctcatatatataaaatcagaaaccaaactcaa
tggagaaaatcagaaaccaaactcaatggaaaaattccctgacctttgtt
cacccagctatccacctgttcattgccgtgctaacttaggacaaggctat
gagaagcccaaacactttggctgggagctttcagagttctgggaaggtga
ctttggaaataatcattctttatccatcatcacgcctctgtgccaccctc
attagttggaaataatttaaaattgaggaagctgggcctggtagcctggc
accattaacacccaagtaagctaagctctttagaattgcaaattctagtt
attgaaagagtaagtgaatggactgattagaagcaaggctaacacctttg
aaggaattaaactgggaatccagccgaggaaaatgcctacaatgaagctc
agtcagggagggaggctcaaacttggaaattactatttcttatctggggc
ttatagttatgttccagtgaatgcaaacaatgtagatctacacagttggc
aagctttagaataagcctaagaaaccattgagtctgagattctgtagtat
tgatgactaggatgggaatatgaattagatagaagtaactatcattagca
ttgtcaaatagcactttctccaataaatgaaaaatatctgctctgtccca
aatagaatagtcattcacctatgtggctactgagcgtttgaaatgtagct
atgtactgagcaaatcaatttcgtattactaaacatcgatggataaagta
tagacggccacatgcagagagcacctactatgtcggacagtacagattca
cagttccacagcgtgctaatgggcaattgacagggccatactgaatctgg
cactggaatgtctttggtgtccatgggctttgagctttgcttttggattt
ggtgttgtggggttgtttgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20916516_20917605
seq2: B6Ng01-005L02.b_46_1140 (reverse)

seq1  AAGCTAGTTCTA--CAGAG-AAAGACCCAGTCTTAAAGGCAAGGCATAGA  47
      ||||||||||||   |||| |||||||||||| |||||||||||||||||
seq2  AAGCTAGTTCTAACAAGAGAAAAGACCCAGTC-TAAAGGCAAGGCATAGA  49

seq1  GTTTGCATTGTAAGCAAGTGGGCATTTGCGGAGGAACAAGATGACAGAGT  97
      ||||||||   |||| ||| ||||||||||||||||||||||||||||||
seq2  GTTTGCATGTAAAGCCAGT-GGCATTTGCGGAGGAACAAGATGACAGAGT  98

seq1  TCCATTTTAACTATCACCAGG-AAGTGGGTGG-AGACCACACTGAAGGTT  145
      ||||||||||||||||||||| |||||||||| |||||||||| ||||||
seq2  TCCATTTTAACTATCACCAGGAAAGTGGGTGGAAGACCACACT-AAGGTT  147

seq1  GAGGG--TGTGAGGCAGGGGAGGTTTACTAA-CAGGAGAAAGGATACTCA  192
      |||||  |||||||||| ||||| ||||||| ||||||||||||||||||
seq2  GAGGGGTTGTGAGGCAGAGGAGG-TTACTAACCAGGAGAAAGGATACTCA  196

seq1  TGGGGCTGATGTTGCTATAGTGGAAGTTATTGTTAGAGTTGTGAGTTAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGATGTTGCTATAGTGGAAGTTATTGTTAGAGTTGTGAGTTAAA  246

seq1  GAGAGAACGCATAAATAGAAAGAGCACATGGATTCTAGAGATGATGTGCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACGCATAAATAGAAAGAGCACATGGATTCTAGAGATGATGTGCT  296

seq1  GAAGCCTGTAGGCCTGGATGTCCTGAGATGCAGGGGAAGGAGCAAGTCTG  342
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGTAGGCCTGGATGTCCTGAGATGCAGGGGAAGGAGCAAGTCTG  346

seq1  GACTGAAGATGTTTG-AAGACAGTGACTTTGAACTGCCTATGCCACATTC  391
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACTGAAGATGTTTGAAAGACAGTGACTTTGAACTGCCTATGCCACATTC  396

seq1  AGCTGGACACTTTTAGAGCAGTCGGTTATTTAAAAAAACCCTAATCTCAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACACTTTTAGAGCAGTCGGTTATTTAAAAAAACCCTAATCTCAG  446

seq1  GGACGCTCTGGCCAAAGGAATGTTTGGGAATCTCCTGGTCTAGATAGTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTCTGGCCAAAGGAATGTTTGGGAATCTCCTGGTCTAGATAGTGG  496

seq1  CTGAAGGGCCTGGAAAAAGAATCGGGGTGGGAGGAGGGATGAAGATGTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGCCTGGAAAAAGAATCGGGGTGGGAGGAGGGATGAAGATGTTC  546

seq1  CAGGTGGCTTCTGGGTCTCCCATAGTTGGCGGGGATGGTGAGAGAAAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCTTCTGGGTCTCCCATAGTTGGCGGGGATGGTGAGAGAAAAGA  596

seq1  ACCGAGAGTGACAGTGGGAATCTTTGATACTCAGGGCAGATAAGCATTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGAGTGACAGTGGGAATCTTTGATACTCAGGGCAGATAAGCATTGG  646

seq1  AACCTGCTGGAAGGGGACAGTACTGCTTCCTTCCTGCACTTACTTCTCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTGGAAGGGGACAGTACTGCTTCCTTCCTGCACTTACTTCTCTT  696

seq1  GCTGTTGTGAGACGACGTCTCACAATGCGGTCAAGTGTGTTCTCGAACCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTGAGACGACGTCTCACAATGCGGTCAAGTGTGTTCTCGAACCC  746

seq1  TCAACCCCTCTGCTTTCCAGATGCTGCCTGGGTCTATTAGCCTGTGCCAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCTCTGCTTTCCAGATGCTGCCTGGGTCTATTAGCCTGTGCCAT  796

seq1  CCCTCCTGGCACACCCTCCATTTTCCTTCTATAATATTGAACGTCATCTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGGCACACCCTCCATTTTCCTTCTATAATATTGAACGTCATCTC  846

seq1  TTACTGATACCACTGCACTTACCCCATTCTCTCTTGTGTTACTCCCAAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATACCACTGCACTTACCCCATTCTCTCTTGTGTTACTCCCAAAT  896

seq1  AGTCCCCCAGCTATGGACCCACCAAGAAGCCACAGCATCCCCCCATTCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCCAGCTATGGACCCACCAAGAAGCCACAGCATCCCCCCATTCAT  946

seq1  ATTTCGTTCCTTTGTATCCTTCTAGACCTAACACCAATCCATGTTCCTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTTCCTTTGTATCCTTCTAGACCTAACACCAATCCATGTTCCTCA  996

seq1  TGACTGGCCTACACTAGTCTGTTCCATAGAGATTTGTTTGAGCTTCACTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCCTACACTAGTCTGTTCCATAGAGATTTGTTTGAGCTTCACTC  1046

seq1  CACTCTACACTTGATTTTGGGCTAACTAGTGATTTGGGCTGGAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACACTTGATTTTGGGCTAACTAGTGATTTGGGCTGGAGAATTC  1095

seq1: chr1_20813826_20814802
seq2: B6Ng01-005L02.g_69_1041

seq1  GAATTCTTTGATGAGCCTCTCATATATATAAAATCAGAAACCAAACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATGAGCCTCTCATATATATAAAATCAGAAACCAAACTCAA  50

seq1  TGGAGAAAATCAGAAACCAAACTCAATGGAAAAATTCCCTGACCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAATCAGAAACCAAACTCAATGGAAAAATTCCCTGACCTTTGTT  100

seq1  CACCCAGCTATCCACCTGTTCATTGCCGTGCTAACTTAGGACAAGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCTATCCACCTGTTCATTGCCGTGCTAACTTAGGACAAGGCTAT  150

seq1  GAGAAGCCCAAACACTTTGGCTGGGAGCTTTCAGAGTTCTGGGAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCCAAACACTTTGGCTGGGAGCTTTCAGAGTTCTGGGAAGGTGA  200

seq1  CTTTGGAAATAATCATTCTTTATCCATCATCACGCCTCTGTGCCACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAATAATCATTCTTTATCCATCATCACGCCTCTGTGCCACCCTC  250

seq1  ATTAGTTGGAAATAATTTAAAATTGAGGAAGCTGGGCCTGGTAGCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGGAAATAATTTAAAATTGAGGAAGCTGGGCCTGGTAGCCTGGC  300

seq1  ACCATTAACACCCAAGTAAGCTAAGCTCTTTAGAATTGCAAATTCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAACACCCAAGTAAGCTAAGCTCTTTAGAATTGCAAATTCTAGTT  350

seq1  ATTGAAAGAGTAAGTGAATGGACTGATTAGAAGCAAGGCTAACACCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGAGTAAGTGAATGGACTGATTAGAAGCAAGGCTAACACCTTTG  400

seq1  AAGGAATTAAACTGGGAATCCAGCCGAGGAAAATGCCTACAATGAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTAAACTGGGAATCCAGCCGAGGAAAATGCCTACAATGAAGCTC  450

seq1  AGTCAGGGAGGGAGGCTCAAACTTGGAAATTACTATTTCTTATCTGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGAGGGAGGCTCAAACTTGGAAATTACTATTTCTTATCTGGGGC  500

seq1  TTATAGTTATGTTCCAGTGAATGCAAACAATGTAGATCTACACAGTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTATGTTCCAGTGAATGCAAACAATGTAGATCTACACAGTTGGC  550

seq1  AAGCTTTAGAATAAGCCTAAGAAACCATTGAGTCTGAGATTCTGTAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTAGAATAAGCCTAAGAAACCATTGAGTCTGAGATTCTGTAGTAT  600

seq1  TGATGACTAGGATGGGAATATGAATTAGATAGAAGTAACTATCA-TAGCA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATGACTAGGATGGGAATATGAATTAGATAGAAGTAACTATCATTAGCA  650

seq1  TTGTCAAATAGCACTTTCTCCAAT-AATGAAAAATATCTGCTCTGT-CCA  697
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  TTGTCAAATAGCACTTTCTCCAATAAATGAAAAATATCTGCTCTGTCCCA  700

seq1  AATAGAATAGTCATTCACCTATGTGGCTACTGAGCGTTTGAAATGTAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATAGTCATTCACCTATGTGGCTACTGAGCGTTTGAAATGTAGCT  750

seq1  ATGTAACTGAGCAAATCAATTTTCGTATTACTAAACATCGATGGATTAAA  797
      |||| |||||||||||||| ||||||||||||||||||||||||| ||||
seq2  ATGT-ACTGAGCAAATCAA-TTTCGTATTACTAAACATCGATGGA-TAAA  797

seq1  GTATAGACGGCCACATGCAGAGAGCAGCTACTATGTCGGACAGTACAGAT  847
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTATAGACGGCCACATGCAGAGAGCACCTACTATGTCGGACAGTACAGAT  847

seq1  TCACAGTTCCACAGCGTGCTAATGGGCAAATGACA-GGCCATAACTGAAG  896
      ||||||||||||||||||||||||||||| ||||| |||||| |||||| 
seq2  TCACAGTTCCACAGCGTGCTAATGGGCAATTGACAGGGCCAT-ACTGAA-  895

seq1  TCTGGCACTGGAATGTCTTTGGTTGTCCATGGGCTTTGGAGCTTTGCTTT  946
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TCTGGCACTGGAATGTCTTTGG-TGTCCATGGGCTTT-GAGCTTTGCTTT  943

seq1  TGGATTTGGTGTTGGTGGGTTGTTTTGAGAC  977
      ||||||||||||||  |||||| ||||||||
seq2  TGGATTTGGTGTTGTGGGGTTG-TTTGAGAC  973