BAC Information

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BAC

Clone NameB6Ng01-005L22
Chromosome1 (Build37)
Map Location 5,979,900 - 5,981,001
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs20, Atp6v1h, EG636659, Oprk1, Npbwr1
Downstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L22.bB6Ng01-005L22.g
ACCDH842798DH842799
length1,2321,114
definitionDH842798|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L22, 5' end.DH842799|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcatctgattcagagctaccaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatatttcctctttgttcctactctctctccc
cactttacttctgatagcttgtcctgaatttcatctagaatccgccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttctaacatta
gaaaaaattcaaggccaaacatattccactttacttctgatagactgtct
tgaatttccttagaaagttcaaggccaggcttacctcgtaaagctatact
cactggtactctcgttccccagctgaaaagttctgaattcatgcagttga
atccttcttaacagtctgctttacgggaacctttattaccgcgacccgca
gttctggttctggaatgagggatcttccttgcgccagtcccgagtttttt
ctcgtcccggaatttctcgtcccggaattcggcaccaattgttattaacg
cgttctcacgcccggccaggaagaacacagcacaccagaatcttctgcgg
caaaactttattgcttacatcttcaggagcaagagtgtaagaagcaagag
agagagaaaacgaaaccccgtccctattaaggagaattatccttcgccta
gaacgtgtcactccctgattggctgcagcccatcggccgagttgacgtca
cggggaaaggcagagcacatggagtggaggaccaccctcggcacatgcgc
agattatttgtttaccacttagaacacagctgtcagcgccatcttgtaac
ggcgaatgtgggcgcggctcccaacagacctatatcaattcactcaaggt
atttcccactttcccttcgatgagattagtgggtctagtttatttgagtc
ctatgaacttggacttgagtttgtgtaggtgataaattgctctagttcat
tcttctacatgtagacatccagtgaagatgctttcaatattcattgttga
tttgacttctttcaaatcaggttatgtcctgagagtaatcctgggtcgtt
acatgaatcccactgtgattagtatagactgt
gaattcacctcttcatatatgtaccctttcctttactgatctatcttgtc
agccccagaaagtatatttttaaaaagagagatttatttaattttaattt
atttttgacatcagagtttgttgtgcagcatacacagcattagttttcaa
tatgtcaggttcatcatctcatgtacagctattgtagacattcatctgat
tgtagtttattctaaacaatgctattatgtgactatgtgtgtgtgtgtat
tggaatgactgccagataatccagataatccagataatccaacaatggct
gcctatgagtggaagaaccaatgatccagtagttcagtccatgaggctgg
atgtctcagctggtcttgagtataagttagaatactgaaaaaaaaaaaaa
ggttctactgccagtgaataaatggagcttctagtgaggagaaagaaagc
aggtaaagagagcaaaaatttccttcttccatgttcttatataggtttac
agcagaaggtatgacccagatcactcttccatataataagaggaaaaatg
ttttttttttttttaaactggtgcatttgaacaattctatgatgtttgga
cacgctaaattctcatttattttaatttaattaactaaatatagtaggaa
atgtgggcagagttgaacattttattttagctctgttttgtatttttctg
tatacattcaagttgctatttagataataaaaagaacccatactgagggt
cattgctttctaatcactgttggaaggtgcataagcaattgaattcataa
tgatttgggaagtaactccagtaacacatagggtgttgatgaaggggttt
tatctcagaccttttatccaccaccacttcagaccttctccatacatgga
cttaataagagactataatattacaccactttttctattttgttcattgt
gatggaaaaatagtcaaaaatatatcttttaaaattgtttctcagtttta
gataattttttggcaactttaattatggtgtttctttaagtaccacaagg
ttttttacttattaacgtgagttaattattttgttttagggaatccgatt
ccccttagggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_5979900_5981001
seq2: B6Ng01-005L22.g_68_1181 (reverse)

seq1  CAAAACCTAAGGGGGACTGGA-TCCATAAAACAAAATATTTACCT--CGT  47
      |||| ||||||||| |  ||| ||| |||||||||||| ||| ||  |||
seq2  CAAACCCTAAGGGGAATCGGATTCCCTAAAACAAAATAATTAACTCACGT  50

seq1  TATATAGT-AAAAACCTTGT-GTACTTAAAGAAACA-CATTATTAAAGTT  94
      ||   ||| ||||||||||| ||||||||||||||| ||| |||||||||
seq2  TAATAAGTAAAAAACCTTGTGGTACTTAAAGAAACACCATAATTAAAGTT  100

seq1  G-CAAAAATATATCTAAATATTGAGGAACAATATCTAAAGATATATTTTT  143
      | ||||||  |||||||| | |||| |||||| |  ||||||||||||||
seq2  GCCAAAAAATTATCTAAA-ACTGAGAAACAATTTTAAAAGATATATTTTT  149

seq1  GACTATTTTTCAATCAC-ATGAACAAATTAG-AAAAGTGGTGT-ATA-TA  189
      ||||||||||| ||||| ||||||||| ||| ||||||||||| ||| ||
seq2  GACTATTTTTCCATCACAATGAACAAAATAGAAAAAGTGGTGTAATATTA  199

seq1  TAGTCTTCTAATAAGTCCATGTATGGAG-AGGTCTGAAGTGGTGGTGG--  236
      ||||||  || ||||||||||||||||| |||||||||||||||||||  
seq2  TAGTCTCTTATTAAGTCCATGTATGGAGAAGGTCTGAAGTGGTGGTGGAT  249

seq1  TAAAGGTCTTGAGATTAAACCCCTTCATCAACACCCTATGTGTTACTGGA  286
       ||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAGGTC-TGAGATAAAACCCCTTCATCAACACCCTATGTGTTACTGGA  298

seq1  GTTACTTCCCAATTCATTATGAATTCAATTGCTTATGCACCTTCCAACAG  336
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTACTTCCCAAATCATTATGAATTCAATTGCTTATGCACCTTCCAACAG  348

seq1  TGATTAGAAAGCAATGACCCTCAGTATGGGTTCTTTTTATTATCTAAATA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGAAAGCAATGACCCTCAGTATGGGTTCTTTTTATTATCTAAATA  398

seq1  GCAACTTGAATGTATACAGAAAAATACAAAACAGAGCTAAAATAAAATGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGAATGTATACAGAAAAATACAAAACAGAGCTAAAATAAAATGT  448

seq1  TCAACTCTGCCCACATTTCCTACTATATTTAGTTAATTAAATTAAAATAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTGCCCACATTTCCTACTATATTTAGTTAATTAAATTAAAATAA  498

seq1  ATGAGAATTTAGCGTGTCCAAACATCATAGAATTGTTCAAATGCACCAGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTTAGCGTGTCCAAACATCATAGAATTGTTCAAATGCACCAGT  548

seq1  TTAAAAAAAAAAAAAACATTTTTCCTCTTATTATATGGAAGAGTGATCTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAACATTTTTCCTCTTATTATATGGAAGAGTGATCTG  598

seq1  GGTCATACCTTCTGCTGTAAACCTATATAAGAACATGGAAGAAGGAAATT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATACCTTCTGCTGTAAACCTATATAAGAACATGGAAGAAGGAAATT  648

seq1  TTTGCTCTCTTTACCTGCTTTCTTTCTCCTCACTAGAAGCTCCATTTATT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCTTTACCTGCTTTCTTTCTCCTCACTAGAAGCTCCATTTATT  698

seq1  CACTGGCAGTAGAACCTTTTTTTTTTTTTCAGTATTCTAACTTATACTCA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGTAGAACCTTTTTTTTTTTTTCAGTATTCTAACTTATACTCA  748

seq1  AGACCAGCTGAGACATCCAGCCTCATGGACTGAACTACTGGATCATTGGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTGAGACATCCAGCCTCATGGACTGAACTACTGGATCATTGGT  798

seq1  TCTTCCACTCATAGGCAGCCATTGTTGGATTATCTGGATTATCTGGATTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTCATAGGCAGCCATTGTTGGATTATCTGGATTATCTGGATTA  848

seq1  TCTGGCAGTCATTCCAATACACACACACACATAGTCACATAATAGCATTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAGTCATTCCAATACACACACACACATAGTCACATAATAGCATTG  898

seq1  TTTAGAATAAACTACAATCAGATGAATGTCTACAATAGCTGTACATGAGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATAAACTACAATCAGATGAATGTCTACAATAGCTGTACATGAGA  948

seq1  TGATGAACCTGACATATTGAAAACTAATGCTGTGTATGCTGCACAACAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACCTGACATATTGAAAACTAATGCTGTGTATGCTGCACAACAAA  998

seq1  CTCTGATGTCAAAAATAAATTAAAATTAAATAAATCTCTCTTTTTAAAAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGTCAAAAATAAATTAAAATTAAATAAATCTCTCTTTTTAAAAA  1048

seq1  TATACTTTCTGGGGCTGACAAGATAGATCAGTAAAGGAAAGGGTACATAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTCTGGGGCTGACAAGATAGATCAGTAAAGGAAAGGGTACATAT  1098

seq1  ATGAAGAGGTGAATTC  1102
      ||||||||||||||||
seq2  ATGAAGAGGTGAATTC  1114