BAC Information

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BAC

Clone NameB6Ng01-006C03
Chromosome5 (Build37)1 (Build37)
Map Location 18,084,511 - 18,084,57587,402,752 - 87,403,794
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C03.bB6Ng01-006C03.g
ACCDH843078DH843079
length5221,033
definitionDH843078|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C03, 5' end.DH843079|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(87,402,752 - 87,403,794)
sequence
gaattcaagaacgtggacttacgatatacttgaaccccattactaatggg
gttttaactgaacaaagaattctcacctgaggaataccgaatggcgtaga
agcccctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatt
ttaactaccctgagattcctcctctctcctttcttaatggctaggttcaa
aaattcaggtgacagctgatgctggcgtggatgtggagaaacaggaacac
tcttccattgttggtgggattgcaggcttgtacaaccactctggaaatca
ggctggcggttcctcagaaaattggacatagtactaccagaggatccttc
gatacctctcctgggcatatatcctgaagatgccccaactggtaagaagg
acacatgctccactatgttcatagcagccttatttataatagccagaagc
tggaaagaacccacatgcccctcaacagaggaatggatacagaaaatgtg
gtacatctacacaatggagtac
gaattcccggctggccctattggtcattgttttgcgtgcagttctctttg
acaaaatacttggggtcatgcagggctactgttacggtcttctcttccac
tcgttgcgcattctgtgtatactttgtaattaagcatcacacagacgaga
aaataaggctgtgcttgggaaaagacactctgggtatctcaatggagacg
tgatggttgtaatgagaatccggactttctgacacacaccctgcatcacc
accaagcttaaactgtcctatcataacttgagaaactggcatgtgatgct
gactctgacacagaaatttccatagtccacacttctgagcttataaaact
gggagtcttgtaaaaatggaaagggatcttggattctgtttctctgggaa
ttctgttcttgcgtgcagagacacaaaataagagtcaactgcctcttgtt
gctatgaaatactgcacccaagtattaaggatggtttcatcggctgaaca
cttctagcttgtttgatacacccagactgagatgctcttagcatgctggg
gaaggtagaggtacaggcctttaaagtaattgttggacaggttatatcgt
agcttccttctagaaaatggagtgggcaaaacatcctggggattcagaat
tcaagcaagctagacaataatgccaaggacaaattatacgatagcctgga
gttcagatttttagtgagctttgaagccagagttcagtgatatgtggcct
gttgaagtctatgctaatagcatactaacttctccaacttaaagcagtca
acattcaagaggatgtagctcttcacacaatacaagagcatgggggaagg
aagacacaggctgaaaaccagaaaagaaggcagtagaggaggaaatgaga
ggtgatgttaaggataacaccaatttaggcgcatcataagatgtgtgtgt
aacctcacatggtgagcactcacctcttttcttttgcgaagtatcggtgg
aggattgggtagaaaagtttcctgccagataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-006C03.b_426_490 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65

seq1: chr1_87402752_87403794
seq2: B6Ng01-006C03.g_65_1097 (reverse)

seq1  TTTATCTTGCAGAGAAATTTTCTACCCAATCCTCCACGGATACATCTCAA  50
      ||||||| ||||  || |||||||||||||||||||| ||||| || |||
seq2  TTTATCTGGCAGGAAACTTTTCTACCCAATCCTCCACCGATACTTCGCAA  50

seq1  AAGAAAAGAGGTGAGTGCTCACCATGTGAGTTTTACACACAGCATCTTAC  100
      ||||||||||||||||||||||||||||||  ||||||||| ||||||| 
seq2  AAGAAAAGAGGTGAGTGCTCACCATGTGAG-GTTACACACA-CATCTTA-  97

seq1  TGATGGCGCCTAAATTGGGTTGTTATCCTTAACATCACCTCTCATTTCCT  150
      |||| |||||||||||||  ||||||||||||||||||||||||||||||
seq2  TGAT-GCGCCTAAATTGG--TGTTATCCTTAACATCACCTCTCATTTCCT  144

seq1  CCTCTACTGCCTTCTTTTCTGGTTTTCAGCCTGTGTCTTCCTTCCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTGCCTTCTTTTCTGGTTTTCAGCCTGTGTCTTCCTTCCCCCAT  194

seq1  GCTCTTGTATTGTGTGTAGAGCTACATCCTCCTTGAATGTTGACTGCTTT  250
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GCTCTTGTATTGTGTGAAGAGCTACATCCT-CTTGAATGTTGACTGCTTT  243

seq1  AAGTTGGAGAAGTTAGTATGCTATTAGCATAGACTTCAACAGGCCACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAGAAGTTAGTATGCTATTAGCATAGACTTCAACAGGCCACATA  293

seq1  TCACTGAACTCTGGCTTCAAAGCTCACTAAAAATCTGAACTCCAGGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAACTCTGGCTTCAAAGCTCACTAAAAATCTGAACTCCAGGCTAT  343

seq1  CGTATAATTTGTCCTTGGCATTATTGTCTAGCTTGCTTGAATTCTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATAATTTGTCCTTGGCATTATTGTCTAGCTTGCTTGAATTCTGAATC  393

seq1  CCCAGGATGTTTTGCCCACTCCATTTTCTAGAAGGAAGCTACGATATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATGTTTTGCCCACTCCATTTTCTAGAAGGAAGCTACGATATAAC  443

seq1  CTGTCCAACAATTACTTTAAAGGCCAGTACCTCTACCTTCCCCAGCATGC  500
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTCCAACAATTACTTTAAAGGCCTGTACCTCTACCTTCCCCAGCATGC  493

seq1  TAAGAGCATCTCAGTCTGGGTCTCTCAAACAAGCTAGAACTGTTCAGCCG  550
      ||||||||||||||||||||| | ||||||||||||||| ||||||||||
seq2  TAAGAGCATCTCAGTCTGGGTGTATCAAACAAGCTAGAAGTGTTCAGCCG  543

seq1  ATGAAACCATCCTTAATTCTTGGGTGCAGTATTTCATAGCAACAAGAGGC  600
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAAACCATCCTTAATACTTGGGTGCAGTATTTCATAGCAACAAGAGGC  593

seq1  AGTTGCCTCTTATTTTGTGTTTCTGTTTGTAAGAACAGAATTCCCAGAGA  650
      ||||| |||||||||||||| ||||   | ||||||||||||||||||||
seq2  AGTTGACTCTTATTTTGTGTCTCTGCACGCAAGAACAGAATTCCCAGAGA  643

seq1  AACAGAATCCAAGATCCATTTCCATTTTTACAAGTCCCCCAGCTTCATCT  700
      ||||||||||||||||| |||||||||||||||| | ||||| || ||  
seq2  AACAGAATCCAAGATCCCTTTCCATTTTTACAAGACTCCCAGTTTTATAA  693

seq1  GCTCAGAAGTGTGGACTCTGGAAATTTCTGTGTCACAGTCAGCATCACAT  750
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  GCTCAGAAGTGTGGACTATGGAAATTTCTGTGTCAGAGTCAGCATCACAT  743

seq1  GCCAGCTTCTCAACTTATGATAGGACTGTTTAAACTTGCTGGTGATGACT  800
      ||||| ||||||| |||||||||||| |||||| |||| ||||||||   
seq2  GCCAGTTTCTCAAGTTATGATAGGACAGTTTAAGCTTGGTGGTGATGCAG  793

seq1  GGTTTGTGTCAGAATGTCTTGGATTCTCATTACAACCATCACGTCTGCAT  850
      ||| |||||||||| |||  |||||||||||||||||||||||||| |||
seq2  GGTGTGTGTCAGAAAGTC-CGGATTCTCATTACAACCATCACGTCTCCAT  842

seq1  TGAGATACCCAGAGTCTCTTTTCCCAAGCAAAGCCTTATTTTCTCGTCTG  900
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TGAGATACCCAGAGTGTCTTTTCCCAAGCACAGCCTTATTTTCTCGTCTG  892

seq1  TGTGATGCTTAATTACAAAGTATACACAGAATGCCCAATGACTGGAAGAG  950
      |||||||||||||||||||||||||||||||||| ||| || ||||||||
seq2  TGTGATGCTTAATTACAAAGTATACACAGAATGCGCAACGAGTGGAAGAG  942

seq1  AAGATTGTAACAGTAGCCCTGACTGACCCCAAGTATTTTGTCAAAGTTGC  1000
      ||||  |||||||||||||||  |||||||||||||||||||||||  | 
seq2  AAGACCGTAACAGTAGCCCTGCATGACCCCAAGTATTTTGTCAAAG-AGA  991

seq1  TATCTACATTAAACAATGACCAATAGGGTGAAGTAGGGAATTC  1043
        |  ||   ||||||||||||||||||   ||  ||||||||
seq2  ACTGCACGCAAAACAATGACCAATAGGG-CCAGCCGGGAATTC  1033