BAC Information

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BAC

Clone NameB6Ng01-006D07
Chromosome1 (Build37)
Map Location 180,488,968 - 180,638,244
singlet/doubletdoublet
Overlap geneD230039L06Rik
Upstream geneLOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
Downstream geneKif26b, Smyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006D07.bB6Ng01-006D07.g
ACCDH843131DH843132
length937663
definitionDH843131|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D07, 5' end.DH843132|Mus musculus domesticus DNA, BAC clone: B6Ng01-006D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,637,716 - 180,638,244)(180,488,968 - 180,489,630)
sequence
gaattccacaacgggagtctacacgaagtctacgagggcagctttttctt
tcccttaatttatagccttacctccttcacagtcttctctgtgtggggag
actctgcaaacggaggaggaggctcaagtcatgatagccgttatcagggc
ttacatctggcccctcagcacctgggaactgtttacttttattctttgtg
ttgccagaaggtaaaggggcagggccacctgcctgcttcctgaaggaccc
ccggggagcacgataaagcacagggccagctgtgctgctagtttggaatc
ttctcttaaatttcatactcccaacatgtgccggctaagacaccggagtt
cagtgcctttccaaaggactctttttttttttttttccattttttattag
gtatttcgctcatttacatttgcaatgctataccaaaagtcccccatagc
cacccaccccctctcccctacccacccactccccttttatggccctggcg
ttcccctgtactggggcatataaagtttgcgtgtccaatgggcctctctt
tccagtgatggccgactaggccatcttttgatgcatatgcagctagagtc
aagagctccggggtactggttagttcataatgttgttccacctatagggt
tgcagatccctttagcttctttggtactttctctagctccttcattgggg
gccatgtgatccatccaatagccgactgtgagcatccacttctatgtttg
ctaggcccaggcatactctgacaagagacagctatatcagggtcctttca
gcataatcttgctagtgtatgcaatggtgtcagcatttggaagctgatta
tgggatggatccccggatatgctagtgtctacatggtccatccttttatc
tcagcttcaaactttgtctctgtaactcctttcaagg
gaattctttatccatatgagatgcaggaaaaccttttctctctggggtac
agactgtgataaacactaggacctttcctagctactgtggctgctggtgg
cttcctcctcttctaagatggttggtggaggtttgctattgatgcagctc
atagagatagactgctcagaccactcattccaatacctctctaggtttcc
agtctgccaaggcagaaccaggagatttcagtttggaatccaagatgttc
aaacctatagtttttcagagctgaactttttattgcttccctgagattat
gttaattgttcaactcaaaatttattcaacccatgctattaagactccgt
tgcttgtgtgggtggtagagatactgtctcagacatggttccaggtcctg
agactatcaaataaggaaagagggtggacagaatccaaaaatgcacatat
tgttactaagtgaagctagcacctgacatggggctgtttaatcactctga
aggtttgtcttggtcaggcagcaagcaccgttctctctcttgtcccctcc
ttgaagtggggttggaaatggtaggtgctgaagtaggaatccaggggagg
atttaaaacaccagaagagagatatggctggagaagcaaggtgaggtgat
gggaggtggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_180637716_180638244
seq2: B6Ng01-006D07.b_44_572 (reverse)

seq1  CAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCATAAAAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCATAAAAGGGGA  50

seq1  GTGGGTGGGTAGGGGAGAGGGGGTGGGTGGCTATGGGGGACTTTTGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGGTAGGGGAGAGGGGGTGGGTGGCTATGGGGGACTTTTGGTAT  100

seq1  AGCATTGCAAATGTAAATGAGCGAAATACCTAATAAAAAATGGAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCAAATGTAAATGAGCGAAATACCTAATAAAAAATGGAAAAAAA  150

seq1  AAAAAAAAGAGTCCTTTGGAAAGGCACTGAACTCCGGTGTCTTAGCCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAGTCCTTTGGAAAGGCACTGAACTCCGGTGTCTTAGCCGGC  200

seq1  ACATGTTGGGAGTATGAAATTTAAGAGAAGATTCCAAACTAGCAGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTGGGAGTATGAAATTTAAGAGAAGATTCCAAACTAGCAGCACAG  250

seq1  CTGGCCCTGTGCTTTATCGTGCTCCCCGGGGGTCCTTCAGGAAGCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTGTGCTTTATCGTGCTCCCCGGGGGTCCTTCAGGAAGCAGGCA  300

seq1  GGTGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGAATAAAAGTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCTGCCCCTTTACCTTCTGGCAACACAAAGAATAAAAGTAAACA  350

seq1  GTTCCCAGGTGCTGAGGGGCCAGATGTAAGCCCTGATAACGGCTATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGGTGCTGAGGGGCCAGATGTAAGCCCTGATAACGGCTATCATG  400

seq1  ACTTGAGCCTCCTCCTCCGTTTGCAGAGTCTCCCCACACAGAGAAGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCCTCCTCCTCCGTTTGCAGAGTCTCCCCACACAGAGAAGACTG  450

seq1  TGAAGGAGGTAAGGCTATAAATTAAGGGAAAGAAAAAGCTGCCCTCGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGGTAAGGCTATAAATTAAGGGAAAGAAAAAGCTGCCCTCGTAG  500

seq1  ACTTCGTGTAGACTCCCGTTGTGGAATTC  529
      |||||||||||||||||||||||||||||
seq2  ACTTCGTGTAGACTCCCGTTGTGGAATTC  529

seq1: chr1_180488968_180489630
seq2: B6Ng01-006D07.g_67_729

seq1  GAATTCTTTATCCATATGAGATGCAGGAAAACCTTTTCTCTCTGGGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCCATATGAGATGCAGGAAAACCTTTTCTCTCTGGGGTAC  50

seq1  AGACTGTGATAAACACTAGGACCTTTCCTAGCTACTGTGGCTGCTGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGATAAACACTAGGACCTTTCCTAGCTACTGTGGCTGCTGGTGG  100

seq1  CTTCCTCCTCTTCTAAGATGGTTGGTGGAGGTTTGCTATTGATGCAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTCTTCTAAGATGGTTGGTGGAGGTTTGCTATTGATGCAGCTC  150

seq1  ATAGAGATAGACTGCTCAGACCACTCATTCCAATACCTCTCTAGGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATAGACTGCTCAGACCACTCATTCCAATACCTCTCTAGGTTTCC  200

seq1  AGTCTGCCAAGGCAGAACCAGGAGATTTCAGTTTGGAATCCAAGATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCAAGGCAGAACCAGGAGATTTCAGTTTGGAATCCAAGATGTTC  250

seq1  AAACCTATAGTTTTTCAGAGCTGAACTTTTTATTGCTTCCCTGAGATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATAGTTTTTCAGAGCTGAACTTTTTATTGCTTCCCTGAGATTAT  300

seq1  GTTAATTGTTCAACTCAAAATTTATTCAACCCATGCTATTAAGACTCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTGTTCAACTCAAAATTTATTCAACCCATGCTATTAAGACTCCGT  350

seq1  TGCTTGTGTGGGTGGTAGAGATACTGTCTCAGACATGGTTCCAGGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTGGGTGGTAGAGATACTGTCTCAGACATGGTTCCAGGTCCTG  400

seq1  AGACTATCAAATAAGGAAAGAGGGTGGACAGAATCCAAAAATGCACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCAAATAAGGAAAGAGGGTGGACAGAATCCAAAAATGCACATAT  450

seq1  TGTTACTAAGTGAAGCTAGCACCTGACATGGGGCTGTTTAATCACTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTAAGTGAAGCTAGCACCTGACATGGGGCTGTTTAATCACTCTGA  500

seq1  AGGTTTGTCTTGGTCAGGCAGCAAGCACCGTTCTCTCTCTTGTCCCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTCTTGGTCAGGCAGCAAGCACCGTTCTCTCTCTTGTCCCCTCC  550

seq1  TTGAAGTGGGGTTGGAAATGGTAGGTGCTGAAGTAGGAATCCAGGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGGGGTTGGAAATGGTAGGTGCTGAAGTAGGAATCCAGGGGAGG  600

seq1  ATTTAAAACACCAGAAGAGAGATATGGCTGGAGAAGCAAGGTGAGGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACACCAGAAGAGAGATATGGCTGGAGAAGCAAGGTGAGGTGAT  650

seq1  GGGAGGTGGAGCC  663
      |||||||||||||
seq2  GGGAGGTGGAGCC  663