BAC Information

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BAC

Clone NameB6Ng01-006E08
Chromosome1 (Build37)
Map Location 106,315,616 - 106,428,624
singlet/doubletdoublet
Overlap geneLOC383546
Upstream genenone
Downstream geneLOC100041134, Cdh20, Rnf152, LOC100041985, Pign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E08.bB6Ng01-006E08.g
ACCDH843177DH843178
length9571,050
definitionDH843177|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E08, 5' end.DH843178|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,427,666 - 106,428,624)(106,315,616 - 106,316,496)
sequence
gaattcatctttcaccttctccctgtgagtttgagccactgtgtgtcctc
ttctctggtcctggaagtagagtttttaccacttcttagtttttatatct
ttagagtccaactgaatcatattatcacttttcttgatcattcttgcagt
gagtagatgatgatgcttttcaacaattctaattttgttaaccaactcat
cataataaatctcttcccctactttccttcccaaacagtactggttctag
ttatctggggaactttgacgaatacaggtatggatcctgctttggggatt
ctgcctgccagttctactacccatcacagatgaactgagaataaatactt
ttgaatgatgcctaggaggagtgtttggtggcaagcttccagggactatg
ctgctatccttggccaaggccttgtgctgtcagcaaatacaacctgacta
ccattcagaaaagtagtgtttctattcattgttgcactgctactcaaaaa
gggttaataagcttgcataaggggcctaatttagaacctggccatagcag
agccactgaaagaaatatggctcatagcatgtcaggtgatataaattaaa
attaatgttatccataatgaaatgtcctcttagatattctgtgtaatttt
gaatattgggaagtttcagaaggctatttctgttttctttttcttagtaa
ggagtatataggattatcccctatattttattccctcaatttaataaaga
ttcaggaaaacattttacaaataatcatatttttagcattacaagcatac
taaacacaaaagaagttattaataataggctattaaaatatcaggcaagg
atggcatattatgtagaaaacccattctctgttaaaaaaaatatgtttaa
caataaaatgaaactgataggcaaattgtgtgtgtgagagagagaagaga
agggaga
gaattcactttaaactgaaatcattgtcaaaagtcatagataggaagcca
taatcttaggagagagcctattgattatacacacacacacacacacacac
acacacacagagagagagagagacatagacacatagacacacagacacac
aaacatatatatatatatatatatatatatatatatatatatatgctatt
gttttccaactaccttctaactagttatgttttcattaatagatttgtga
tgctttcaactttggtcagaagagcttcttagcacactgaggagtggtta
atgctgagaagtgtcactgctacaatgtacagagaattagtgactttgaa
tgttcagttgcagatggaatacctatataacatccttttcacaaggccta
aggaagattatagaagagagggaggcaagaacataagatagtgaaaggga
ggaaaggagtaggaaatgctttcctctaggcatgacatggctcctgaggc
ctcactcataactgaggacatttaagcagttgatcaatattgtagatgag
atgggaaagttacttttatttagagatgtgattacccataagttcctcat
gacccaatttatgacccaatgtctgcatgcacatgagcagaactatctgc
atacagaaggctaaaattcaatcattaattaaacaaataagcaaacttct
tctttttttaataaaaaggatacaaaaacaaaaggaagatgtaaaattgt
atcctgagaagtgttagaaaacaggaggaataaatgtatgcaaaatacat
tttaacataacgcaagaactttgcaataattattttctttttaagtttaa
aaaatatactaggggagactctttgtcctctttcagtgtttagtgggtcc
aaggtactctgggcttctggctacatcattctgaccttcgatctactttc
ttactttctttttatcaagtaatatcagcttgtaaacagttgacctcatc
ttggaaatcttaagtaattcattggagtgattctttgccaaattggtgaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106427666_106428624
seq2: B6Ng01-006E08.b_47_1003 (reverse)

seq1  TCTCCCTCTCT-TTCTCTCTCTCACACACACAATTTGCCTATCAGTTTCA  49
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCT-TCTCTTCTCTCTCTCACACACACAATTTGCCTATCAGTTTCA  49

seq1  TTTTATTTTGTTAAACATATTTTTTTTAACAGAGAATGGGTTTTCTACAT  99
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTA--TTGTTAAACATATTTTTTTTAACAGAGAATGGGTTTTCTACAT  97

seq1  AATATGCCATCCTTGCCTGATATTTTAATAGCCTATTATTAATAACTTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCATCCTTGCCTGATATTTTAATAGCCTATTATTAATAACTTCT  147

seq1  TTTGTGTTTAGTATGCTTGTAATGCTAAAAATATGATTATTTGTAAAATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTAGTATGCTTGTAATGCTAAAAATATGATTATTTGTAAAATG  197

seq1  TTTTCCTGAATCTTTATTAAATTGAGGGAATAAAATATAGGGGATAATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAATCTTTATTAAATTGAGGGAATAAAATATAGGGGATAATCC  247

seq1  TATATACTCCTTACTAAGAAAAAGAAAACAGAAATAGCCTTCTGAAACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTCCTTACTAAGAAAAAGAAAACAGAAATAGCCTTCTGAAACTT  297

seq1  CCCAATATTCAAAATTACACAGAATATCTAAGAGGACATTTCATTATGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATTCAAAATTACACAGAATATCTAAGAGGACATTTCATTATGGA  347

seq1  TAACATTAATTTTAATTTATATCACCTGACATGCTATGAGCCATATTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAATTTTAATTTATATCACCTGACATGCTATGAGCCATATTTCT  397

seq1  TTCAGTGGCTCTGCTATGGCCAGGTTCTAAATTAGGCCCCTTATGCAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCTCTGCTATGGCCAGGTTCTAAATTAGGCCCCTTATGCAAGC  447

seq1  TTATTAACCCTTTTTGAGTAGCAGTGCAACAATGAATAGAAACACTACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACCCTTTTTGAGTAGCAGTGCAACAATGAATAGAAACACTACTT  497

seq1  TTCTGAATGGTAGTCAGGTTGTATTTGCTGACAGCACAAGGCCTTGGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATGGTAGTCAGGTTGTATTTGCTGACAGCACAAGGCCTTGGCCA  547

seq1  AGGATAGCAGCATAGTCCCTGGAAGCTTGCCACCAAACACTCCTCCTAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCAGCATAGTCCCTGGAAGCTTGCCACCAAACACTCCTCCTAGG  597

seq1  CATCATTCAAAAGTATTTATTCTCAGTTCATCTGTGATGGGTAGTAGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCAAAAGTATTTATTCTCAGTTCATCTGTGATGGGTAGTAGAAC  647

seq1  TGGCAGGCAGAATCCCCAAAGCAGGATCCATACCTGTATTCGTCAAAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCAGAATCCCCAAAGCAGGATCCATACCTGTATTCGTCAAAGTT  697

seq1  CCCCAGATAACTAGAACCAGTACTGTTTGGGAAGGAAAGTAGGGGAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATAACTAGAACCAGTACTGTTTGGGAAGGAAAGTAGGGGAAGAG  747

seq1  ATTTATTATGATGAGTTGGTTAACAAAATTAGAATTGTTGAAAAGCATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATGATGAGTTGGTTAACAAAATTAGAATTGTTGAAAAGCATCA  797

seq1  TCATCTACTCACTGCAAGAATGATCAAGAAAAGTGATAATATGATTCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACTCACTGCAAGAATGATCAAGAAAAGTGATAATATGATTCAGT  847

seq1  TGGACTCTAAAGATATAAAAACTAAGAAGTGGTAAAAACTCTACTTCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTAAAGATATAAAAACTAAGAAGTGGTAAAAACTCTACTTCCAG  897

seq1  GACCAGAGAAGAGGACACACAGTGGCTCAAACTCACAGGGAGAAGGTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGAAGAGGACACACAGTGGCTCAAACTCACAGGGAGAAGGTGAA  947

seq1  AGATGAATTC  959
      ||||||||||
seq2  AGATGAATTC  957

seq1: chr1_106315616_106316496
seq2: B6Ng01-006E08.g_234_1116

seq1  TATATATATATATATATATATATATATGCTATTGTTTTCCAACTACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATGCTATTGTTTTCCAACTACCTTC  50

seq1  TAACTAGTTATGTTTTCATTAATAGATTTGTGATGCTTTCAACTTTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTTATGTTTTCATTAATAGATTTGTGATGCTTTCAACTTTGGTC  100

seq1  AGAAGAGCTTCTTAGCACACTGAGGAGTGGTTAATGCTGAGAAGTGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCTTCTTAGCACACTGAGGAGTGGTTAATGCTGAGAAGTGTCAC  150

seq1  TGCTACAATGTACAGAGAATTAGTGACTTTGAATGTTCAGTTGCAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAATGTACAGAGAATTAGTGACTTTGAATGTTCAGTTGCAGATGG  200

seq1  AATACCTATATAACATCCTTTTCACAAGGCCTAAGGAAGATTATAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTATATAACATCCTTTTCACAAGGCCTAAGGAAGATTATAGAAGA  250

seq1  GAGGGAGGCAAGAACATAAGATAGTGAAAGGGAGGAAAGGAGTAGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGCAAGAACATAAGATAGTGAAAGGGAGGAAAGGAGTAGGAAAT  300

seq1  GCTTTCCTCTAGGCATGACATGGCTCCTGAGGCCTCACTCATAACTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCTAGGCATGACATGGCTCCTGAGGCCTCACTCATAACTGAGG  350

seq1  ACATTTAAGCAGTTGATCAATATTGTAGATGAGATGGGAAAGTTACTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAGCAGTTGATCAATATTGTAGATGAGATGGGAAAGTTACTTTT  400

seq1  ATTTAGAGATGTGATTACCCATAAGTTCCTCATGACCCAATTTATGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGATGTGATTACCCATAAGTTCCTCATGACCCAATTTATGACCC  450

seq1  AATGTCTGCATGCACATGAGCAGAACTATCTGCATACAGAAGGCTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCATGCACATGAGCAGAACTATCTGCATACAGAAGGCTAAAAT  500

seq1  TCAATCATTAATTAAACAAATAAGCAAACTTCTTCTTTTTTTAATAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATTAATTAAACAAATAAGCAAACTTCTTCTTTTTTTAATAAAAA  550

seq1  GGATACAAAAACAAAAGGAAGATGT-AAATTGTATCCTGAGAAGTGTTAG  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGATACAAAAACAAAAGGAAGATGTAAAATTGTATCCTGAGAAGTGTTAG  600

seq1  AAAACAGGAGGAATAAATGTATGCAAAATACATTTTAACAT-ACGCAAGA  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAACAGGAGGAATAAATGTATGCAAAATACATTTTAACATAACGCAAGA  650

seq1  ACTTTGC-ATGAATATTTTCTTTTTAAGTTTAAAAAATATACTAGGGGAG  697
      ||||||| || | |||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAATAATTATTTTCTTTTTAAGTTTAAAAAATATACTAGGGGAG  700

seq1  ACTCTTTGTTCTCTTTCAGTGTTTAGT-GGTCCAAGGTACTCT-GGCTTC  745
      ||||||||| ||||||||||||||||| ||||||||||||||| ||||||
seq2  ACTCTTTGTCCTCTTTCAGTGTTTAGTGGGTCCAAGGTACTCTGGGCTTC  750

seq1  TGGCTACATCATTCTGACCTCAGTTCTAACTTTCTCACTTTC-TTTTATC  794
      ||||||||||||||||||||  | ||| ||||||| |||||| |||||||
seq2  TGGCTACATCATTCTGACCTTCGATCT-ACTTTCTTACTTTCTTTTTATC  799

seq1  AGGTAATATCAGC-TGTAAACCAGTTTGACCTCATCTT-GAAATCTTTAA  842
      | ||||||||||| |||||| ||| ||||||||||||| ||||||||  |
seq2  AAGTAATATCAGCTTGTAAA-CAG-TTGACCTCATCTTGGAAATCTT--A  845

seq1  TGTAATTACATTGATAGAATTTCTTTGCCAAATT-GTGAA  881
       |||||| |||||  ||   |||||||||||||| |||||
seq2  AGTAATT-CATTG-GAGTGATTCTTTGCCAAATTGGTGAA  883