BAC Information

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BAC

Clone NameB6Ng01-006F02
Chromosome1 (Build37)
Map Location 175,691,031 - 175,692,104
singlet/doubletsinglet
Overlap geneIfi204
Upstream geneLOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
Downstream geneEG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F02.bB6Ng01-006F02.g
ACCDH843213DH843214
length1,2101,070
definitionDH843213|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F02, 5' end.DH843214|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttattcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt
ctgttcaggaattttcccctgtacccatatcttcaaagcttttccccact
ttctcctcaataagtttcagtgtctctggttttatgtgaagttccatgat
ccacttagatttgacctcagtacaaggagataattatggattgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattattgaaaatg
ctgtctttcttccactggatagttttagctccctttttgaagatcaagtg
accataggtgtcaacatccttaatcatcagggaaatgcaaatcaaaacaa
ccctgagattccacctcacaccagtcagaatggctaagatgaaaaattca
ggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctcca
ttgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggc
ggttcctcagaaaattggacatagtactaccggaggatccagcaatacct
ctcctgggcatatatccagaagatgacccaaccggtaagaaggacacatg
ctccactatgttcatagcagccttatttataaaagccagaagctggaaag
aacccagatgcgcctcaacagaggaatggatacagaaaatgtggtacatc
tacacaatggagtactactcagctattaaaagatgattttatgaaattcc
tagccaaatggatgacctggagggcatcatcctgagtgaggtaccattca
caagactcacacatatgtactcactgataagtgatatagcccaaactaga
taccaaaattaagatacattgctaaacatgaactccagaaaaatgagact
ggatgtgaaccatggccctcttgaatggaacaaatccatgcaggatcaga
gacgattgactgataagtgacctggaacgcttccggctccccttatacgc
gactgaacgt
gaattcagaaatctgcctgcctctgcctcccaagtgatgggattaaaggt
atgtgccaccaagcctggcaactcacaccttcttaaggatatatttaatc
aaagtttatccttatgtttgttaatacagaggatagattggtattcttaa
aataggtgacataatttgttaatttatatacttaaatataaatcttaact
ttgttctttagatttattacttttcaacttctaagttacatctggaacac
caatctttgatcaccttctatttttgtctgaaatatacacaccaaatata
ctccttaaattgcaagtatactagccgggcagtggtggtgcacaccttta
atcccagcacctgggaagcagaggcagaggcagaagcagaggcagaggca
gaggcagaggcaaaggcaggtggatttctgagttcaaggccagcctggtc
tacagagcgagttccaggatggccagggatacacagaaaaaccctgtctt
taaaaaaaaaaaacaaaaaaaagaataaattataagcaaccattggaaga
caaacgtcctcagtagctaatccaaagaaccaatatgctgatggtctttg
agatgcaaactggaaatatgacagctatctgtggacttcaaggttaagaa
gggagtggagataataagacacaggcagggacagggtcttctgtgttacc
ttctgatctctcttttttaagaatttcagctcgttttctaagagctggta
cttcttcacaaaacgcaatcagtttgcccaatccagaatcagctggaaat
ttctcttccatcatgttagcaatctgaatcgtggtgtattgctcttggtt
gtctctttccagatttaaatctctggccagcaatgacttaaataagctaa
atatgcttattgatacattcaagtcctctcagcagaacaattctcttgta
ttcattcaccatctttgaagttgtgctgagctggaagaaaaaaaaattgg
catattgtttgttgtgcatgtattcagaatttctgaagaaaggacatgaa
cttgggatgaatgaggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175691031_175692104
seq2: B6Ng01-006F02.g_63_1132

seq1  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGATGGGATTAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGATGGGATTAAAGGT  50

seq1  ATGTGCCACCAAGCCTGGCAACTCACACCTTCTTAAGGATATATTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACCAAGCCTGGCAACTCACACCTTCTTAAGGATATATTTAATC  100

seq1  AAAGTTTATCCTTATGTTTGTTAATACAGAGGATAGATTGGTATTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTATCCTTATGTTTGTTAATACAGAGGATAGATTGGTATTCTTAA  150

seq1  AATAGGTGACATAATTTGTTAATTTATATACTTAAATATAAATCTTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGACATAATTTGTTAATTTATATACTTAAATATAAATCTTAACT  200

seq1  TTGTTCTTTAGATTTATTACTTTTCAACTTCTAAGTTACATCTGGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTAGATTTATTACTTTTCAACTTCTAAGTTACATCTGGAACAC  250

seq1  CAATCTTTGATCACCTTCTATTTTTGTCTGAAATATACACACCAAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTGATCACCTTCTATTTTTGTCTGAAATATACACACCAAATATA  300

seq1  CTCCTTAAATTGCAAGTATACTAGCCGGGCAGTGGTGGTGCACACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAATTGCAAGTATACTAGCCGGGCAGTGGTGGTGCACACCTTTA  350

seq1  ATCCCAGCACCTGGGAAGCAGAGGCAGAGGCAGAAGCAGAGGCAGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACCTGGGAAGCAGAGGCAGAGGCAGAAGCAGAGGCAGAGGCA  400

seq1  GAGGCAGAGGCAAAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAAAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTC  450

seq1  TACAGAGCGAGTTCCAGGATGGCCAGGGATACACAGAAAAACCCTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCGAGTTCCAGGATGGCCAGGGATACACAGAAAAACCCTGTCTT  500

seq1  TAAAAAAAAAAAACAAAAAAAAGAATAAATTATAAGCAACCATTGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAACAAAAAAAAGAATAAATTATAAGCAACCATTGGAAGA  550

seq1  CAAACGTCCTCAGTAGCTAATCCAAAGAACCAATATGCTGATGGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGTCCTCAGTAGCTAATCCAAAGAACCAATATGCTGATGGTCTTTG  600

seq1  AGATGCAAACTGGAAATATGACAGCTATCTGTGGACTTCAAGGTTAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAACTGGAAATATGACAGCTATCTGTGGACTTCAAGGTTAAGAA  650

seq1  GGGAGTGGAGATAATAAGACACAGGCAGGGACAGGGTCTTCTGTGTTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGAGATAATAAGACACAGGCAGGGACAGGGTCTTCTGTGTTACC  700

seq1  TTCTGATCTCTCTTTTTTAAGAATTTCAGCTCGTTTTCTAAGAGCTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTCTCTTTTTTAAGAATTTCAGCTCGTTTTCTAAGAGCTGGTA  750

seq1  CTTCTTCACAAAACGCAATCAGTTTGCCCAATCCAGAATCAGCTGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCACAAAACGCAATCAGTTTGCCCAATCCAGAATCAGCTGGAAAT  800

seq1  TTCTCTTCCATCATGTTAGCAATCTGAATCGTGGTGTATTGCTCTTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCATCATGTTAGCAATCTGAATCGTGGTGTATTGCTCTTGGTT  850

seq1  GTCTCTTTCCAGATTTAAATCTCTGGCCAGCAATGACTTAAATAAGCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCCAGATTTAAATCTCTGGCCAGCAATGACTTAAATAAGCTAA  900

seq1  AATAATGCTTATTGATACATTCAAGTCCTCTCAGCAGAACAATTCTCTTG  950
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  A--TATGCTTATTGATACATTCAAGTCCTCTCAGCAGAACAATTCTCTTG  948

seq1  TATTCATTCACCATCTTTGAAGTTGTTGCTGAGCCTGGAAG-AAAAAAAA  999
      ||||||||||||||||||||||||| ||||||| ||||||| ||||||||
seq2  TATTCATTCACCATCTTTGAAGTTG-TGCTGAG-CTGGAAGAAAAAAAAA  996

seq1  TTGGCATA-TGTATGTTGTGCATGTATTCAGAAATTTCTGAAGAAA-GAC  1047
      |||||||| ||| |||||||||||||||||| |||||||||||||| |||
seq2  TTGGCATATTGTTTGTTGTGCATGTATTCAG-AATTTCTGAAGAAAGGAC  1045

seq1  ATGACTATGGGAATGAATGAGGTATGT  1074
      ||||   |||| |||||||||| ||||
seq2  ATGAACTTGGG-ATGAATGAGG-ATGT  1070