BAC Information

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BAC

Clone NameB6Ng01-006F11
Chromosome1 (Build37)1 (Build37)
Map Location 176,122,819 - 176,123,647175,234,827 - 175,235,448
singlet/doubletsingletsinglet
Overlap geneSpna1
Upstream geneOlfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F11.bB6Ng01-006F11.g
ACCDH843230DH843231
length829987
definitionDH843230|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F11, 5' end.DH843231|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(176,122,819 - 176,123,647)(175,234,827 - 175,235,448)
sequence
gaattcttgtactgtgacctagattgaaaaaaattatagtgcagaaaagg
caatcatgtagccaagagtgtatattttaagttcaggtatatcggaaccc
ataagtaggatctaggccatctaaccttcaaagtgttgaagttgtacgtt
gatattgtttgttgtaaagagatactcaaactggggacactcattcagct
gttgctgaggaaaaaaatgttatttttttcagaccttggatgagactgca
accaagcttattgacaatgaccactatgactctgagaatatcgctgctat
tcgtgatggggtatgccaagggccagagcctctctctacctgtccgtcca
tctcggtggctgtaataaaacactgatgagaagcaacttgggggaggaaa
gggattatttatctttcgggtttgcaatctattataaaggaaagccaagt
caggaacctggtgtcaggaacggaagcagagaccatagaggaatcctgct
tactaacctgatcctcatggcttgcaccacctgatattgcccaccatgct
ccgtcttatatcagtcattaatcaagaaaatgttcccacaaacatcccca
caggtcaatcttatggaagcagttcttgaattgaagtttgatcctcccag
atgactctagtatttacaagtcaagtcatggcctgtgcaccagtatcagg
aaaagcattggggaaagacagccagggtgggcagtgatctcaactgtcta
tatttgcttttgatggccatgagtttatttacagttccatgggtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcctgaagactctacttctttaaatcaccaactctaacttttagtc
aactctcatatgtgccatatgagagaaacttaagacagaagagatgtaga
ttgcacaacaacaacaagaacacaaaatcataagcagggaattatatttg
gcataagaagcatctctaaatggaacgcagcagggaccagaggcaagtgt
aagagcacagacccctgacaactcaaaggcgtcatagagcaggactgggt
tttccattttcttttgaaatgagattgaatttattgaaaggaagataatc
acaactaaattctcagttacaccatgattagttgcccctaacaaatgtga
aatattaaaatatattaatggaatatgtttgtacaaatatatgaacatta
tgaactaaatgaaaatggcaaataaaatgtgttctaagtcttacctacat
aactgaattttcacagaagtcaagttacaattatgtgtatagttattgtt
ttaatttggttttaagttttcagtatataatagatgactaaagttactgt
tgtatatgtctagaccctttttatgggagcctatgtttgggtaaagataa
aatagatatgtatttctttttaaaaattttttttattacgtattttccta
aattacatttccaatgctatcccaaaagtcccccataccctccccaccac
tcccctatccacccattcacactttttggccctggcgttcccctgtattg
gggcatataaagtttgtgtgtccaatgggcctctctttccagtgatgggc
gactaggccatcttttgatacatatgcagctagagacatgagctctgggg
tactggttagttcgcaatgttgttgcacctacagggttgcagatctcttt
agctccttggattctttctctagctcctccattggggccctgtgatccat
ctaatagctgactgtgaacatccacttctgtgtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_176122819_176123647
seq2: B6Ng01-006F11.b_42_870

seq1  GAATTCTTGTACTGTGACCTAGATTGAAAAAAATTATAGTGCAGAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTACTGTGACCTAGATTGAAAAAAATTATAGTGCAGAAAAGG  50

seq1  CAATCATGTAGCCAAGAGTGTATATTTTAAGTTCAGGTATATCGGAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATGTAGCCAAGAGTGTATATTTTAAGTTCAGGTATATCGGAACCC  100

seq1  ATAAGTAGGATCTAGGCCATCTAACCTTCAAAGTGTTGAAGTTGTACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGGATCTAGGCCATCTAACCTTCAAAGTGTTGAAGTTGTACGTT  150

seq1  GATATTGTTTGTTGTAAAGAGATACTCAAACTGGGGACACTCATTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTTGTTGTAAAGAGATACTCAAACTGGGGACACTCATTCAGCT  200

seq1  GTTGCTGAGGAAAAAAATGTTATTTTTTTCAGACCTTGGATGAGACTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAGGAAAAAAATGTTATTTTTTTCAGACCTTGGATGAGACTGCA  250

seq1  ACCAAGCTTATTGACAATGACCACTATGACTCTGAGAATATCGCTGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTATTGACAATGACCACTATGACTCTGAGAATATCGCTGCTAT  300

seq1  TCGTGATGGGGTATGCCAAGGGCCAGAGCCTCTCTCTACCTGTCCGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATGGGGTATGCCAAGGGCCAGAGCCTCTCTCTACCTGTCCGTCCA  350

seq1  TCTCGGTGGCTGTAATAAAACACTGATGAGAAGCAACTTGGGGGAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTGGCTGTAATAAAACACTGATGAGAAGCAACTTGGGGGAGGAAA  400

seq1  GGGATTATTTATCTTTCGGGTTTGCAATCTATTATAAAGGAAAGCCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTATTTATCTTTCGGGTTTGCAATCTATTATAAAGGAAAGCCAAGT  450

seq1  CAGGAACCTGGTGTCAGGAACGGAAGCAGAGACCATAGAGGAATCCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCTGGTGTCAGGAACGGAAGCAGAGACCATAGAGGAATCCTGCT  500

seq1  TACTAACCTGATCCTCATGGCTTGCACCACCTGATATTGCCCACCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACCTGATCCTCATGGCTTGCACCACCTGATATTGCCCACCATGCT  550

seq1  CCGTCTTATATCAGTCATTAATCAAGAAAATGTTCCCACAAACATCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTATATCAGTCATTAATCAAGAAAATGTTCCCACAAACATCCCCA  600

seq1  CAGGTCAATCTTATGGAAGCAGTTCTTGAATTGAAGTTTGATCCTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAATCTTATGGAAGCAGTTCTTGAATTGAAGTTTGATCCTCCCAG  650

seq1  ATGACTCTAGTATTTACAAGTCAAGTCATGGCCTGTGCACCAGTATCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTAGTATTTACAAGTCAAGTCATGGCCTGTGCACCAGTATCAGG  700

seq1  AAAAGCATTGGGGAAAGACAGCCAGGGTGGGCAGTGATCTCAACTGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTGGGGAAAGACAGCCAGGGTGGGCAGTGATCTCAACTGTCTA  750

seq1  TATTTGCTTTTGATGGCCATGAGTTTATTTACAGTTCCATGGGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTTTGATGGCCATGAGTTTATTTACAGTTCCATGGGTGTGTGT  800

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  829
      |||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTG  829

seq1: chr1_175234827_175235448
seq2: B6Ng01-006F11.g_66_683

seq1  GAATTCCTGAAGACTCTACTTCTTTAAATCACCAACTCTAACTTTTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGACTCTACTTCTTTAAATCACCAACTCTAACTTTTAGTC  50

seq1  AACTCTCATATGTGCCATATGAGAGAAATTTTAGACAGAAGAAATGTAGA  100
      |||||||||||||||||||||||||||| || |||||||||| |||||||
seq2  AACTCTCATATGTGCCATATGAGAGAAACTTAAGACAGAAGAGATGTAGA  100

seq1  TTGCACAACAACAACAAGAACACAAAATCATAAGCAGGGAATTATATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAACAACAACAAGAACACAAAATCATAAGCAGGGAATTATATTTG  150

seq1  GCATAAGAAGCATCTCTAAATGGAACGCAGCAGGGACGAGAGGCAAGTGT  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCATAAGAAGCATCTCTAAATGGAACGCAGCAGGGACCAGAGGCAAGTGT  200

seq1  AAGAGCACAGACCCCTGACAACTCAAAGGCGTCATAGAGCAGGATTGGGT  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGAGCACAGACCCCTGACAACTCAAAGGCGTCATAGAGCAGGACTGGGT  250

seq1  TTTCCATTTTCTTTTGAAATGAGATTGAATTTATTGAAAGGAAGATTATC  300
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCCATTTTCTTTTGAAATGAGATTGAATTTATTGAAAGGAAGATAATC  300

seq1  ACAGCTAAATACTCAGTTACACTAACTGTGATTGGTTGCCCCTAACAAGT  350
      ||| |||||| ||||||||||| |    ||||| |||||||||||||| |
seq2  ACAACTAAATTCTCAGTTACACCA----TGATTAGTTGCCCCTAACAAAT  346

seq1  GTGAAATATTAAAATATATTAATGGAATATATTTGTACAAATATATAAAC  400
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GTGAAATATTAAAATATATTAATGGAATATGTTTGTACAAATATATGAAC  396

seq1  ATTATGAATTAAATGAAAATGGCAAATAAAATGTATTCAAAGTCTTACCT  450
      |||||||| ||||||||||||||||||||||||| ||| |||||||||||
seq2  ATTATGAACTAAATGAAAATGGCAAATAAAATGTGTTCTAAGTCTTACCT  446

seq1  CGATAACTGAATCTTTATATAAGTCAAGCTACAATTATGTGTATAGTTAT  500
        |||||||||| || | | |||||||| |||||||||||||||||||||
seq2  ACATAACTGAATTTTCACAGAAGTCAAGTTACAATTATGTGTATAGTTAT  496

seq1  TGTTTTAGTTTGGCCTCAAGTTTGCAGTATATATTGGATGAATAAAGTGA  550
      ||||||| |||||  | |||||| ||||||||| | ||||| |||||| |
seq2  TGTTTTAATTTGGTTTTAAGTTTTCAGTATATAATAGATGACTAAAGTTA  546

seq1  CTGTTGTATATGTCTAGATCCTTTTTATGGGTACCTATGTTTAGGTAAAA  600
      |||||||||||||||||| ||||||||||||  ||||||||| |||||| 
seq2  CTGTTGTATATGTCTAGACCCTTTTTATGGGAGCCTATGTTTGGGTAAAG  596

seq1  ATAAAATAGATATGTATTTCTT  622
      ||||||||||||||||||||||
seq2  ATAAAATAGATATGTATTTCTT  618