BAC Information

Click to search

BAC

Clone NameB6Ng01-006F15
Chromosome1 (Build37)
Map Location 107,597,178 - 107,598,241
singlet/doubletsinglet
Overlap gene2310035C23Rik
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249
Downstream geneLOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F15.bB6Ng01-006F15.g
ACCDH843236DH843237
length4711,043
definitionDH843236|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F15, 5' end.DH843237|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgtctcggaaaaccaaaatagatagatagatagatagatagatagatag
atagatagatagatagatagataaatgaaattcacacaaaaaatcatttt
gagtgcagtagcccaaacgccaagagacaaagtcatgttttctcttacat
gtagatgctagcttttaagcctctaatatgtgtgatgcatccaataattg
tagattatgtacctactaagagacctgcagagaaggtgaggatctcccaa
ggggaaatggaatatattattgtgaaagggaactaggataggaagattaa
atatggaggggcatgggagaagaggatggatctggggagggacagctacg
ctgaaagccatttgaaaaaccctatgaaagcctactgtgcatgctttaag
ctgcctaaatgtaagctatataaatatgaaaggaatctaattggagtctt
ttttttttaggaaagacaatg

gaattcacctccaggcgtctgggtacacacacacacacacacaaacacac
acaaacacacacacacacctccaaacatgttcattcagatgttcaaaagt
ttaaaaaaagtttttttgatctttaaaaaaaatatttaaggtttttgttt
ctttgcagtatgaatacaggattggaaagatggcttataagggaataatg
ttatttccgttataagcctgacaacctaatttatggtgcctagaaccaat
ttaaaaaccagacttagatctggtggtcctggctcatgcctttaatcccc
gcagcactcaggaagcagaagcaggcagatttctgcattcaaggtcagcc
tggtctacagactgagttctaggacagccagggctatacagagaaacctt
ctctctaacttcatgtagttggggggtcagggggaagatgctatagtaca
tgtgactataatctcatgcctatggagagataagaagtaaagacaggaaa
atcaccagaaacttatggctgcctgcaacagtgaatgagaccctgtcgca
tgggtgatgactaatatccgaagttgtcctctggcttccacacttgtgct
agggcaagtcacagacatacattcattctctctctctctctctctggctt
ccacacttgtgctagggcaagtcccccccacacacacacacacacactca
cacactcacaaagacagacagagaaaattaagtggaacgttattacctcg
tttgctttgagaaatttagctgtctttttttttttttttttttttttgaa
gataaaagcagtcagaaattacaatgaaagttttgaaagctagaattctt
gaattagaatgatgatgggaaaaagagaatactgatccagtttgtgagtg
aatatgtaagagtaaatgatggacagtagcctctgaggcattgatgtgtt
agtgctccaagactggagggattcacagtaaatgtgaaagagcacaggca
tgtgttatgattcgatttcaggatagtgtaactagaaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107597178_107598241
seq2: B6Ng01-006F15.g_65_1107

seq1  GAATTCACCTCCAGGCGTCTGGGTACACACACACACACACACAAACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCCAGGCGTCTGGGTACACACACACACACACACAAACACAC  50

seq1  ACAAACACACACACACACCTCCAAACATGTTCATTCAGATGTTCAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACACACACACCTCCAAACATGTTCATTCAGATGTTCAAAAGT  100

seq1  TTAAAAAAAGTTTTTTTGATCTTTAAAAAAAATATTTAAGGTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAGTTTTTTTGATCTTTAAAAAAAATATTTAAGGTTTTTGTTT  150

seq1  CTTTGCAGTATGAATACAGGATTGGAAAGATGGCTTATAAGGGAATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGTATGAATACAGGATTGGAAAGATGGCTTATAAGGGAATAATG  200

seq1  TTATTTCCGTTATAAGCCTGACAACCTAATTTATGGTGCCTAGAACCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCGTTATAAGCCTGACAACCTAATTTATGGTGCCTAGAACCAAT  250

seq1  TTAAAAACCAGACTTAGATCTGGTGGTCCTGGCTCATGCCTTTAATCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCAGACTTAGATCTGGTGGTCCTGGCTCATGCCTTTAATCCCC  300

seq1  GCAGCACTCAGGAAGCAGAAGCAGGCAGATTTCTGCATTCAAGGTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTCAGGAAGCAGAAGCAGGCAGATTTCTGCATTCAAGGTCAGCC  350

seq1  TGGTCTACAGACTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGACTGAGTTCTAGGACAGCCAGGGCTATACAGAGAAACCTT  400

seq1  CTCTCTAACTTCATGTAGTTGGGGGGTCAGGGGGAAGATGCTATAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAACTTCATGTAGTTGGGGGGTCAGGGGGAAGATGCTATAGTACA  450

seq1  TGTGACTATAATCTCATGCCTATGGAGAGATAAGAAGTAAAGACAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTATAATCTCATGCCTATGGAGAGATAAGAAGTAAAGACAGGAAA  500

seq1  ATCACCAGAAACTTATGGCTGCCTGCAACAGTGAATGAGACCCTGTCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGAAACTTATGGCTGCCTGCAACAGTGAATGAGACCCTGTCGCA  550

seq1  TGGGTGATGACTAATATCCGAAGTTGTCCTCTGGCTTCCACACTTGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGATGACTAATATCCGAAGTTGTCCTCTGGCTTCCACACTTGTGCT  600

seq1  AGGGCAAGTCACAGACATACATTCATTCTCTCTCTCTCTCTCTCTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGTCACAGACATACATTCATTCTCTCTCTCTCTCTCTCTGGCTT  650

seq1  CCACACTTGTGCTAGGGCAAGTCCCCCCCACACACACACACACACACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGTGCTAGGGCAAGTCCCCCCCACACACACACACACACACTCA  700

seq1  CACACTCACAAAGACAGACAGAG-AAATTAAGTGGAACGTTATTACCTCG  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACACTCACAAAGACAGACAGAGAAAATTAAGTGGAACGTTATTACCTCG  750

seq1  TTTGCTTTGAGAAATTTAGCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTT  799
      ||||||||||||||||||||||||       |||||||||||||||||||
seq2  TTTGCTTTGAGAAATTTAGCTGTC-------TTTTTTTTTTTTTTTTTTT  793

seq1  TTTTTTAGAT-AAAGCAGTCAG-AATTACAATGAAAGTTTTGAAAAGCTA  847
      ||||  |||| ||||||||||| ||||||||||||||||||| |||||||
seq2  TTTTGAAGATAAAAGCAGTCAGAAATTACAATGAAAGTTTTG-AAAGCTA  842

seq1  GAATTCTTGAATTAGAATGATGAT-GGAAAAAGAGAATACTGATCCAGTT  896
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAATTCTTGAATTAGAATGATGATGGGAAAAAGAGAATACTGATCCAGTT  892

seq1  TGTGAGTGAATATGTAAGGAGTAAAATGATGGACAGTAGCCTCTGAGGCA  946
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TGTGAGTGAATATGTAA-GAGT-AAATGATGGACAGTAGCCTCTGAGGCA  940

seq1  TTGATGTGTTAGTGCTTCAGAGACTTGGAGGGGAATTCACAGTAAATGTG  996
      |||||||||||||||| || |||| |||||||  ||||||||||||||||
seq2  TTGATGTGTTAGTGCTCCA-AGAC-TGGAGGG--ATTCACAGTAAATGTG  986

seq1  AAAAGAGCACAAAGGGCATGTGTTTATAGAATTCAGTATTTCAAGAGTAG  1046
       ||||||||||   |||||||||   ||  ||||   |||||| || |||
seq2  -AAAGAGCACA---GGCATGTGT---TATGATTC--GATTTCAGGA-TAG  1026

seq1  TGTAACTAGAAGGTGGGA  1064
      ||||||||||||| ||||
seq2  TGTAACTAGAAGG-GGGA  1043


| Home | SequenceCutter | Blast | Download |