BAC Information

Click to search

BAC

Clone NameB6Ng01-006J21
Chromosome4 (Build37)1 (Build37)
Map Location 79,221,267 - 79,221,612151,335,550 - 151,336,560
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J21.bB6Ng01-006J21.g
ACCDH843426DH843427
length7531,012
definitionDH843426|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J21, 5' end.DH843427|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,221,267 - 79,221,612)(151,335,550 - 151,336,560)
sequence
gaattctttctttaaaataaaattaaaattatatttatgttttctttatt
tatatgtagttagtgattacattctcaacttattttgttgtcattctctt
ccttctcctcctcctcctcttcctcttcctccttcctcttcttttccttc
ctcctcttcctcttttttcttcttcttctcttcctttccctctctctcct
actttttttccttttcctcctcgtcctatctatttaaaatatattttatt
ttattattttgtgtaattggtcattttacctctgtacatgtctgcatacc
atatatatgaaatgaccctggaggctagaagaatggtctgaccccctaga
actggaacagttgtgagccaccataggggtgctgaggatcaaacccaggt
cctttagaaaagaatccagtagattgcttttggcaagatagccattttta
caatgttaatcctgccaatccatgagcatgggagatctttccattttctg
agatctttaatttctttcttcagagacttgaagtttttatcatacagatc
tttcacttccttagttagagtcacgccaatatattttatattatttgtga
atattgagaagggtgttgtttccctaatttctttctcagcccgtttattc
ttggtgtagagaaaggccattgacttgtttgagttaattttatatacagc
tacttcactgaagctgttatctggtttaggagttctctggaggaattgta
ggg
gaattccagggtggggaggcaggagtgtgtgggtggggaacatcctcatc
gaagcagggggagggcaaataggataggggttttctggaggggaaaccag
gaaagggtataacattgaaatgtaaataaagaaaatattcaataaaagag
aaaatatgaaaaagagaaaaggaaaataggatgaatagatcaccaaatgg
tacagtataggtgaaaattggtaggtacagtgcttgaatacatgcaactt
aagaatgtaaacaggtaggggaatctgaacattcgatattaggatgtaga
gaaaacagtacagcaattaaatggaccttttcagctccctcaagaagagt
aaccatccccaatacagacatactataaattgttctgttgcattgtagtt
gtatgtcatagcacaggatacaaagttgtttttctggaaatcgtagttaa
aaccattttctgcccctattgaatttgataacaccactttatctaatata
caacagctgcttagaaacctactgctattttgttcagtatgagatcagta
ttgctctcttctttgctaaggcaatggctatatcccagtactttgttggc
attgctctttagattcaattttgattcttaggaaaagcccataggaggca
ttgatatcacaaactgaaacatgatctccattataggtcctacgccatag
cttatagagcttatagagcttatagggttttttaatttggtttaaagcta
gatatcacagtgacacattatactttgtgtctgtgaaaaggacatatggg
acacacatttatttatatattagttcttttttgtctatggtaataaggat
caaccctaattgtgaatagctcttgattccttgtagcatattgcttttga
tagaggtattcaaaataagctgtaaagttgcagattctaataaagtatat
aacttagttaacattaggacagttctccatgggctggttaatatgttttt
tccccataaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79221267_79221612
seq2: B6Ng01-006J21.b_455_796 (reverse)

seq1  CCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTG  50
      |||| | |||||| |||||||||||||||||| ||| ||||||||| |||
seq2  CCCT-ACAATTCCTCCAGAGAACTCCTAAACCAGAT-AACAGCTTCAGTG  48

seq1  AAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTAC  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGTATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTAC  98

seq1  ACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTC  150
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAATAAACGGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTC  148

seq1  AATAGTCACAAATAATATAAAATATCTCGGTGTGACTCTAACTAAGGAAG  200
      |||| |||||||||||||||||||| | || |||||||||||||||||||
seq2  AATATTCACAAATAATATAAAATATATTGGCGTGACTCTAACTAAGGAAG  198

seq1  TGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTA--  246

seq1  GAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGAT  300
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -AAGATCTCAGAAAATGGAAAGATCTCCCATGCTCATGGATTGGCAGGAT  295

seq1  CAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC-AGATTC  346
       |||||||||||||||||||||||||||||||||||||||  |||||
seq2  TAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACTGGATTC  342

seq1: chr1_151335550_151336560
seq2: B6Ng01-006J21.g_66_1077

seq1  GAATTCCAGGGTGGGGAGGCAGGAGTGTGTGGGTGGGGAACATCCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTGGGGAGGCAGGAGTGTGTGGGTGGGGAACATCCTCATC  50

seq1  GAAGCAGGGGGAGGGCAAATAGGATAGGGGTTTTCTGGAGGGGAAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGGGAGGGCAAATAGGATAGGGGTTTTCTGGAGGGGAAACCAG  100

seq1  GAAAGGGTATAACATTGAAATGTAAATAAAGAAAATATTCAATAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTATAACATTGAAATGTAAATAAAGAAAATATTCAATAAAAGAG  150

seq1  AAAATATGAAAAAGAGAAAAGGAAAATAGGATGAATAGATCACCAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAAAAAGAGAAAAGGAAAATAGGATGAATAGATCACCAAATGG  200

seq1  TACAGTATAGGTGAAAATTGGTAGGTACAGTGCTTGAATACATGCAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATAGGTGAAAATTGGTAGGTACAGTGCTTGAATACATGCAACTT  250

seq1  AAGAATGTAAACAGGTAGGGGAATCTGAACATTCGATATTAGGATGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTAAACAGGTAGGGGAATCTGAACATTCGATATTAGGATGTAGA  300

seq1  GAAAACAGTACAGCAATTAAATGGACCTTTTCAGCTCCCTCAAGAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGTACAGCAATTAAATGGACCTTTTCAGCTCCCTCAAGAAGAGT  350

seq1  AACCATCCCCAATACAGACATACTATAAATTGTTCTGTTGCATTGTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCCCAATACAGACATACTATAAATTGTTCTGTTGCATTGTAGTT  400

seq1  GTATGTCATAGCACAGGATACAAAGTTGTTTTTCTGGAAATCGTAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCATAGCACAGGATACAAAGTTGTTTTTCTGGAAATCGTAGTTAA  450

seq1  AACCATTTTCTGCCCCTATTGAATTTGATAACACCACTTTATCTAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTCTGCCCCTATTGAATTTGATAACACCACTTTATCTAATATA  500

seq1  CAACAGCTGCTTAGAAACCTACTGCTATTTTGTTCAGTATGAGATCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTGCTTAGAAACCTACTGCTATTTTGTTCAGTATGAGATCAGTA  550

seq1  TTGCTCTCTTCTTTGCTAAGGCAATGGCTATATCCCAGTACTTTGTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTTCTTTGCTAAGGCAATGGCTATATCCCAGTACTTTGTTGGC  600

seq1  ATTGCTCTTTAGATTCAATTTTGATTCTTAGGAAAAGCCCATAGGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTTAGATTCAATTTTGATTCTTAGGAAAAGCCCATAGGAGGCA  650

seq1  TTGATATCACAAACTGAAACATGATCTCCATTATAGGTCCTACGCCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATCACAAACTGAAACATGATCTCCATTATAGGTCCTACGCCATAG  700

seq1  CTTATAGAGCTTATAGAGCTTATAGGG-TTTTTAATTTGGTTTAAAGCTA  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTATAGAGCTTATAGAGCTTATAGGGTTTTTTAATTTGGTTTAAAGCTA  750

seq1  GATATCACAGTGACACATTATACTTTGTGTCTGTG-AAAGGACATATGGG  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATATCACAGTGACACATTATACTTTGTGTCTGTGAAAAGGACATATGGG  800

seq1  ACACACATTTATTTATATATTAGTTCTTTTTTGTCTATGGTTAATAAGGA  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACACATTTATTTATATATTAGTTCTTTTTTGTCTATGG-TAATAAGGA  849

seq1  TCAACCCTAATTGTGAATAGCTCTTTGATTCCTTGTAGCATATTGC-TTT  897
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TCAACCCTAATTGTGAATAGCTC-TTGATTCCTTGTAGCATATTGCTTTT  898

seq1  GATAGAGTTATTCAAAATAAGCTGTAAAGATGCAGATCCTAATAAAGTAT  947
      ||||||| ||||||||||||||||||||| ||||||| ||||||||||||
seq2  GATAGAGGTATTCAAAATAAGCTGTAAAGTTGCAGATTCTAATAAAGTAT  948

seq1  ATAACTTAGTTAAACATTAGGACAGTTCTCCATTGGCT-GTTAATATGTT  996
      ||||||||||| ||||||||||||||||||||| |||| |||||||||||
seq2  ATAACTTAGTT-AACATTAGGACAGTTCTCCATGGGCTGGTTAATATGTT  997

seq1  TTTACTCTATAAAGA  1011
      ||| | | |||||||
seq2  TTTTCCCCATAAAGA  1012