BAC Information

Click to search

BAC

Clone NameB6Ng01-006J24
Chromosome1 (Build37)
Map Location 168,295,019 - 168,296,049
singlet/doubletsinglet
Overlap genenone
Upstream geneIqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006J24.bB6Ng01-006J24.g
ACCDH843432DH843433
length1,1631,025
definitionDH843432|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J24, 5' end.DH843433|Mus musculus domesticus DNA, BAC clone: B6Ng01-006J24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcatatcaaaacaaccctgagat
tctatctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agattctggcgaggatgtggagaaagaggaacactcctccattgttggtg
agattgcaagctcgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatcatgcaatacctctcctgggc
atatatccagaaggtgtcccaaccggtaagaaggacacatgctccagtat
gttcatagcagccttatttataatagctagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaaaaatgaattacgaaattcctgggcaa
atggttggacctggagggcatcatcctgaatgaggtaacccaatcacaaa
agaactcaagtgaaatgtactcactgataagtggatatttgcccagaaac
ttagtatagcgagatataaggtaaaagatgcaaaacacatgaaacagaag
aagaacgaagaccaaagtgtggacacttttctccttcttagaattggaac
aatcacccatggaaggagtacagagacaaagtttggagctgagacaaaag
gatggaccatctagagactgccatatccagggatccatcccataattagc
ctccaaacgatgacaccatggcatacactagcaagcctttgttgcaagga
ccatgatatagctgtaccttgtgagactaggccggggcctagcaaacaca
gaagtggatgctcacagtcactattagatggatcacagggccccacggag
gagctagagaaagtatccaagagctaaatagaactgaaaccctaacggtg
gacacattatgaactaccagtactccagagcttctgactctagctgcata
tgtattcaagatggctagtcagcatcactgaatagagctcgttgatcagc
aactttatatgccctggtcagggaacgccaggccaaaaatgggaatgggt
gtggtgagggaaa
gaattctctggtttaccagctttttttgtgcaaaccttgttccttaattt
aaaactatttggttaaataaaattggctcagccaatttctggagggttta
gaggtcggcaggttttgagtttacctggtgggggtggcagaggcagagag
aagaaggattcaggggagagggggaaactaccctgaggggaggtggacca
tgagcaagcacatggccaggagaaacagcaaggatctggggcacaccgct
ggggaggtagccaggcgggcagttagaaaagtagattaggggctatctcc
agtgattgtcaaagccaagtaaaataaccgttgtcggagtctcacttatt
tgtaagcctgacgggcataagtttaaattggttcaagtacattttggcac
actttctgtggggcatagaatcaaactgagacaagttactgggtagagag
gcagctctttgaagctactgcaggacaaaaaaacagacgtgggtccagcc
aaccaaggaggtgtggtactcccaaaggttgcatggttccatagcattgg
aatccacactaaagagagcttccagaaggctccctcccagcacaagatgc
aaatgcatgctgggactcagccccaaaggcagggcaggggctggctttct
atgtaagtttctcactggtacagagatcccatctggacatccagagcttg
acccctcgctctccttccaatgtcccgacatccaggccggacaccgggca
accaatccccactctctcagccggccacactgaggaggctgaagccttga
atcggtatgcaagctgcagttgcagttcgggtccacaccctgcgcgagac
acatccgagcttggagctggatttagaccattttttccagtagagaaatg
cacaggtcacggcacaggagatagacgacaaaacagtctcaagagcataa
aagccaacagttattttttttttctataactaacgaataaagaacccaga
aacctgctgtggtttccgagttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168295019_168296049
seq2: B6Ng01-006J24.g_69_1093

seq1  GAATTCTCTGGTTTACCAGCTTTTTTTGTGCAAACCTTGTTCCTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTTTACCAGCTTTTTTTGTGCAAACCTTGTTCCTTAATTT  50

seq1  AAAACTATTTGGTTAAATAAAATTGGCTCAGCCAATTTCTGGAGGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTTGGTTAAATAAAATTGGCTCAGCCAATTTCTGGAGGGTTTA  100

seq1  GAGGTCGGCAGGTTTTGAGTTTACCTGGTGGGGGTGGCAGAGGCAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCGGCAGGTTTTGAGTTTACCTGGTGGGGGTGGCAGAGGCAGAGAG  150

seq1  AAGAAGGATTCAGGGGAGAGGGGGAAACTACCCTGAGGGGAGGTGGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGATTCAGGGGAGAGGGGGAAACTACCCTGAGGGGAGGTGGACCA  200

seq1  TGAGCAAGCACATGGCCAGGAGAAACAGCAAGGATCTGGGGCACACCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCACATGGCCAGGAGAAACAGCAAGGATCTGGGGCACACCGCT  250

seq1  GGGGAGGTAGCCAGGCGGGCAGTTAGAAAAGTAGATTAGGGGCTATCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTAGCCAGGCGGGCAGTTAGAAAAGTAGATTAGGGGCTATCTCC  300

seq1  AGTGATTGTCAAAGCCAAGTAAAATAACCGTTGTCGGAGTCTCACTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGTCAAAGCCAAGTAAAATAACCGTTGTCGGAGTCTCACTTATT  350

seq1  TGTAAGCCTGACGGGCATAAGTTTAAATTGGTTCAAGTACATTTTGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCTGACGGGCATAAGTTTAAATTGGTTCAAGTACATTTTGGCAC  400

seq1  ACTTTCTGTGGGGCATAGAATCAAACTGAGACAAGTTACTGGGTAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGTGGGGCATAGAATCAAACTGAGACAAGTTACTGGGTAGAGAG  450

seq1  GCAGCTCTTTGAAGCTACTGCAGGACAAAAAAACAGACGTGGGTCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTTTGAAGCTACTGCAGGACAAAAAAACAGACGTGGGTCCAGCC  500

seq1  AACCAAGGAGGTGTGGTACTCCCAAAGGTTGCATGGTTCCATAGCATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGAGGTGTGGTACTCCCAAAGGTTGCATGGTTCCATAGCATTGG  550

seq1  AATCCACACTAAAGAGAGCTTCCAGAAGGCTCCCTCCCAGCACAAGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACACTAAAGAGAGCTTCCAGAAGGCTCCCTCCCAGCACAAGATGC  600

seq1  AAATGCATGCTGGGACTCAGCCCCAAAGGCAGGGCAGGGGCTGGCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATGCTGGGACTCAGCCCCAAAGGCAGGGCAGGGGCTGGCTTTCT  650

seq1  ATGTAAGTTTCTCACTGGTACAGAGATCCCATCTGGACATCCAGAGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGTTTCTCACTGGTACAGAGATCCCATCTGGACATCCAGAGCTTG  700

seq1  ACCCCTCGCTCTCCTTCCAATGTCCCGACATCCAGGCCGGACACCGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCGCTCTCCTTCCAATGTCCCGACATCCAGGCCGGACACCGGGCA  750

seq1  ACCAATCCCCACTCTCTCAGCCGGCCACACTGAGGAGGCTGAAGCCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCCCCACTCTCTCAGCCGGCCACACTGAGGAGGCTGAAGCCTTGA  800

seq1  ATCGGTATGCAAGCTGCAGGTTGCAGTTCGGGTCCACACCCTGCGCGAGA  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCGGTATGCAAGCTGCA-GTTGCAGTTCGGGTCCACACCCTGCGCGAGA  849

seq1  CACATCCGAGGCTTGGAGCTGGATTTAGACCATTTTTTCCAGTAGAGAAA  900
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CACATCCGA-GCTTGGAGCTGGATTTAGACCATTTTTTCCAGTAGAG-AA  897

seq1  AGGCACAGGTCACGGCACAGGAGACAGACGACAAAACAGTCTCAGGAGCA  950
      | |||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  ATGCACAGGTCACGGCACAGGAGATAGACGACAAAACAGTCTCAAGAGCA  947

seq1  TAAAAGCC-ACAGTTTTTTTTTTTTTTTTTCTATAACCTACGAATAAAAG  999
      |||||||| ||||    || |||||||||||||||||  |||||||||  
seq2  TAAAAGCCAACAG----TTATTTTTTTTTTCTATAACTAACGAATAAAGA  993

seq1  AACCAGAAACC-GCTGTGGTGTTCCGAGTTGAA  1031
      | ||||||||| |||||||| ||||||||||||
seq2  ACCCAGAAACCTGCTGTGGT-TTCCGAGTTGAA  1025