BAC Information

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BAC

Clone NameB6Ng01-006K10
Chromosome12 (Build37)1 (Build37)
Map Location 110,829,400 - 110,829,506108,048,879 - 108,050,002
singlet/doubletsingletsinglet
Overlap geneRtl1
Upstream geneEvl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2
Downstream gene6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K10.bB6Ng01-006K10.g
ACCDH843450DH843451
length1051,113
definitionDH843450|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K10, 5' end.DH843451|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,829,400 - 110,829,506)(108,048,879 - 108,050,002)
sequence
gaattcaaggccagcctagctaacataatgagacttagtctcagaagaag
aagaaaaggaggaggaagaagaggaggaagaggaggaggaagaggaagag
gagga
gaattcagtgttctctgaagtgcttgaaaagtagcctttaaagaggaaac
ttaaacccagggacgaatatcacaggatgagatatgatttctctgacata
gaaagagttaacaacatccctgcataggtctcctgaaggaaggaagtggc
agagtacaaaagaaacacctacaatatgctagctgtcttagagttttact
gctgtgaagggacaccatgaccttggcagcccttataaaggaaaccattt
aactggggctggcttacagtttcagaggtttactaacatcatggcaggaa
acatggcaatatgcaggcaggcatgctggaaaaggctctgagagtctgca
tctttgatctgactgcagccaggagagcctgactagtggacagctaggag
gaggggctcttccacactgggtggagcttgagcataggaagagaactcaa
agcctacctccacagtgaagcacttcctcaacaagagcacacctactcca
aggccacacctcctaatagtgtcattccccatgggccaagaagttacaca
catgagtctacagggaccaaacctattcaaaccaccacactagccaaaga
aatcattgaaaatgaatgaaaagttagctttctatgctattttttatttc
taaaaatgatcccctgtggtcctactagttgttgaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagagaagaagagaaagagag
agagagatcttctgtagagacattaaatgaacaggcactggagttcttac
ctgagttctcctgatatcaagtctatgttcttttttaagatttatttatt
ttttttatgtatatatgagtacactgtaactgtacagatgattgtgagcc
ttcatgtgggttgtttggtaatggcattaggacctctgctcactccagtc
aacccagcttgttctggtcggtcccgctcgctccgaccaaaaatttactt
aatggtaaaatagtactgtagcttgtcttcgacgcaccagaagagggcgt
tctgatctcatacagatgtgggagccactatggggttgctggattgaact
caggacttcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_110829400_110829506
seq2: B6Ng01-006K10.b_85_146 (reverse)

seq1  TCCTCCTCTTCCTCTTCCTCCTCCTCTTCCTCCTCATCCTCTTCTTCCTC  50
      ||||||||||||||||||||||||||||||      ||||||||||||||
seq2  TCCTCCTCTTCCTCTTCCTCCTCCTCTTCC------TCCTCTTCTTCCTC  44

seq1  CTCTTCCTCCTCTCCTTCTTCCTCCTCCTCTCCCTCCTCCTCCCCTTCTT  100
      ||| |  || ||| ||||                                
seq2  CTCCTTTTCTTCTTCTTC--------------------------------  62

seq1  CTTCTTC  107
             
seq2  -------  62

seq1: chr1_108048879_108050002
seq2: B6Ng01-006K10.g_68_1180 (reverse)

seq1  TTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAAC  50
      ||||| |||||||||||||||   ||||||||| ||||||||||| ||  
seq2  TTCTG-AAGTCCTGAGTTCAA--TCCAGCAACCCCATAGTGGCTCCCA--  45

seq1  CATCTGTAATGAGATCAG-ACGCCCTCTTCTGGTGCGTCTGAAGAC-AGC  98
      ||||||| |||||||||| |||||||||||||||||||| |||||| |||
seq2  CATCTGT-ATGAGATCAGAACGCCCTCTTCTGGTGCGTC-GAAGACAAGC  93

seq1  TACAGTGTACTTATTTATAACAATAAGTAAATTTTTTGGGTCGGAGCGAG  148
      ||||  |||| ||||| || || |||||||||||||  ||||||||||||
seq2  TACA--GTAC-TATTT-TACCATTAAGTAAATTTTT--GGTCGGAGCGAG  137

seq1  CGGGACCGACCAGAACAAGCTGGGTTGACTGGAGTGAGCAGAGGTCCTAA  198
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CGGGACCGACCAGAACAAGCTGGGTTGACTGGAGTGAGCAGAGGTCCT-A  186

seq1  ATGCCATTACC-AACAA-CCACATGAAGGCTCACAATCATCTGTACAGTT  246
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  ATGCCATTACCAAACAACCCACATGAAGGCTCACAATCATCTGTACAGTT  236

seq1  ACAGTGTACTCATATATACATAAAATAAATAAATAAATCTTAAAAAAGAA  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGTGTACTCATATATACATAAAAAAAATAAATAAATCTTAAAAAAGAA  286

seq1  CATAGACTTGATATCAGGAG-ACTCAGGTAAGAACTCCAGTGCCTGTTCA  345
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATAGACTTGATATCAGGAGAACTCAGGTAAGAACTCCAGTGCCTGTTCA  336

seq1  TTTAATGTCTCTACAGAATGTCTCTCTCTCTCTTTCTTCTTCTTCTTCTT  395
      ||||||||||||||||||  |||||||||||||||| |||||||| ||||
seq2  TTTAATGTCTCTACAGAAGATCTCTCTCTCTCTTTC-TCTTCTTC-TCTT  384

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACA  434

seq1  ACTAGTAGGACCACAGGGGATCATTTTTAGAAATAAAAAATAGCATAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAGGACCACAGGGGATCATTTTTAGAAATAAAAAATAGCATAGAA  484

seq1  AGCTAACTTTTCATTCATTTTCAATGATTTCTTTGGCTAGTGTGGTGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACTTTTCATTCATTTTCAATGATTTCTTTGGCTAGTGTGGTGGTT  534

seq1  TGAATAGGTTTGGTCCCTGTAGACTCATGTGTGTAACTTCTTGGCCCATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTTTGGTCCCTGTAGACTCATGTGTGTAACTTCTTGGCCCATG  584

seq1  GGGAATGACACTATTAGGAGGTGTGGCCTTGGAGTAGGTGTGCTCTTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGACACTATTAGGAGGTGTGGCCTTGGAGTAGGTGTGCTCTTGTT  634

seq1  GAGGAAGTGCTTCACTGTGGAGGTAGGCTTTGAGTTCTCTTCCTATGCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGCTTCACTGTGGAGGTAGGCTTTGAGTTCTCTTCCTATGCTC  684

seq1  AAGCTCCACCCAGTGTGGAAGAGCCCCTCCTCCTAGCTGTCCACTAGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCACCCAGTGTGGAAGAGCCCCTCCTCCTAGCTGTCCACTAGTCA  734

seq1  GGCTCTCCTGGCTGCAGTCAGATCAAAGATGCAGACTCTCAGAGCCTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCTGGCTGCAGTCAGATCAAAGATGCAGACTCTCAGAGCCTTTT  784

seq1  CCAGCATGCCTGCCTGCATATTGCCATGTTTCCTGCCATGATGTTAGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGCCTGCCTGCATATTGCCATGTTTCCTGCCATGATGTTAGTAA  834

seq1  ACCTCTGAAACTGTAAGCCAGCCCCAGTTAAATGGTTTCCTTTATAAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAAACTGTAAGCCAGCCCCAGTTAAATGGTTTCCTTTATAAGGG  884

seq1  CTGCCAAGGTCATGGTGTCCCTTCACAGCAGTAAAACTCTAAGACAGCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGTCATGGTGTCCCTTCACAGCAGTAAAACTCTAAGACAGCTA  934

seq1  GCATATTGTAGGTGTTTCTTTTGTACTCTGCCACTTCCTTCCTTCAGGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTGTAGGTGTTTCTTTTGTACTCTGCCACTTCCTTCCTTCAGGAG  984

seq1  ACCTATGCAGGGATGTTGTTAACTCTTTCTATGTCAGAGAAATCATATCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGCAGGGATGTTGTTAACTCTTTCTATGTCAGAGAAATCATATCT  1034

seq1  CATCCTGTGATATTCGTCCCTGGGTTTAAGTTTCCTCTTTAAAGGCTACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTGATATTCGTCCCTGGGTTTAAGTTTCCTCTTTAAAGGCTACT  1084

seq1  TTTCAAGCACTTCAGAGAACACTGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  TTTCAAGCACTTCAGAGAACACTGAATTC  1113