BAC Information

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BAC

Clone NameB6Ng01-007F23
Chromosome1 (Build37)
Map Location 175,258,871 - 175,313,182
singlet/doubletdoublet
Overlap geneDarc, Cadm3
Upstream geneKcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007F23.bB6Ng01-007F23.g
ACCDH843963DH843964
length818181
definitionDH843963|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F23, 5' end.DH843964|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,312,365 - 175,313,182)(175,258,871 - 175,259,054)
sequence
gaattcagcctggtgaacacaggctgcctttgactcagagatatctcaac
tgcaaaatatggaaacctgaattccatgaatctgcttgctcctcacaatc
catttagttaatggtaggatcatttcattcattaattaccaccgaataat
gtatttatttgttctataaatccataagtaacttatgtctaccaagaaat
gtgccggaatttgaatatagaaggatactagtgatatcacaggtaatatt
attcattgaaattattctcatacaattttgatattgcttccctggccttg
aaatctttctagatcctcttcacaccattacctatccttacccattttcc
ttctctctctctcttctgaagggagggggcaccataaaagcaaacaaaaa
actttttgaagacttggaaacagaaaatttaccagaatcataaaaatgtt
gtctaactctacagctacatccagtgatgtacaaaaacaaaatgggccaa
gtaatcaccaagtctgatgagtctgtgagttttctagagctgcagaccta
agctgatatttaaaatgagaacagtttttaaccagagcacaaaacgaagt
tggattttcaaagcaagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
aactgtgcctgagtgtgtacatgtgcatgtgtgtgagcatgtgtgcattt
ttgtgtgtgtgtatctgtgtctgagtgtgtgcatatatgtgtatgatcat
gctcatgtccctttatcttctctgtgtgtgtatatgtgtgtgtgtgttca
agaagtgttcttggttgt
ctcgggggctacggaagaaaggtgttgggatacagagaaggagggtatag
gtatgaagggggatgacgctttgcgaacagacatttgtttcctaaatcct
ggagggtatggtgctcattcagaaataaattaattataaacatcaatgtg
ttattcaaactttcctctagaaaaaaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175312365_175313182
seq2: B6Ng01-007F23.b_42_859 (reverse)

seq1  ACAACCATGAAACAC-TCTTGAACACACACACACATATACACACACAGAG  49
      ||||||| | ||||| ||||||||||||||||||||||||||||||||||
seq2  ACAACCAAG-AACACTTCTTGAACACACACACACATATACACACACAGAG  49

seq1  AAGATAAAGGGACATGAGCATGATCATACACATATATGCACACACTCAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGGGACATGAGCATGATCATACACATATATGCACACACTCAGA  99

seq1  CACAGATACACACACACAAAAATGCACACATGCTCACACACATGCACATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATACACACACACAAAAATGCACACATGCTCACACACATGCACATG  149

seq1  TACACACTCAGGCACAGTTACACACACACACACACACACACACACACACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTCAGGCACAGTTACACACACACACACACACACACACACACACA  199

seq1  AACTTGCTTTGAAAATCCAACTTCGTTTTGTGCTCTGGTTAAAAACTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTTGAAAATCCAACTTCGTTTTGTGCTCTGGTTAAAAACTGTT  249

seq1  CTCATTTTAAATATCAGCTTAGGTCTGCAGCTCTAGAAAACTCACAGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTAAATATCAGCTTAGGTCTGCAGCTCTAGAAAACTCACAGACT  299

seq1  CATCAGACTTGGTGATTACTTGGCCCATTTTGTTTTTGTACATCACTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACTTGGTGATTACTTGGCCCATTTTGTTTTTGTACATCACTGGA  349

seq1  TGTAGCTGTAGAGTTAGACAACATTTTTATGATTCTGGTAAATTTTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGTAGAGTTAGACAACATTTTTATGATTCTGGTAAATTTTCTGT  399

seq1  TTCCAAGTCTTCAAAAAGTTTTTTGTTTGCTTTTATGGTGCCCCCTCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTCTTCAAAAAGTTTTTTGTTTGCTTTTATGGTGCCCCCTCCCT  449

seq1  TCAGAAGAGAGAGAGAGAAGGAAAATGGGTAAGGATAGGTAATGGTGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGAGAGAGAGAAGGAAAATGGGTAAGGATAGGTAATGGTGTGA  499

seq1  AGAGGATCTAGAAAGATTTCAAGGCCAGGGAAGCAATATCAAAATTGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCTAGAAAGATTTCAAGGCCAGGGAAGCAATATCAAAATTGTAT  549

seq1  GAGAATAATTTCAATGAATAATATTACCTGTGATATCACTAGTATCCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATTTCAATGAATAATATTACCTGTGATATCACTAGTATCCTTC  599

seq1  TATATTCAAATTCCGGCACATTTCTTGGTAGACATAAGTTACTTATGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAAATTCCGGCACATTTCTTGGTAGACATAAGTTACTTATGGAT  649

seq1  TTATAGAACAAATAAATACATTATTCGGTGGTAATTAATGAATGAAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACAAATAAATACATTATTCGGTGGTAATTAATGAATGAAATGA  699

seq1  TCCTACCATTAACTAAATGGATTGTGAGGAGCAAGCAGATTCATGGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCATTAACTAAATGGATTGTGAGGAGCAAGCAGATTCATGGAATT  749

seq1  CAGGTTTCCATATTTTGCAGTTGAGATATCTCTGAGTCAAAGGCAGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCCATATTTTGCAGTTGAGATATCTCTGAGTCAAAGGCAGCCTG  799

seq1  TGTTCACCAGGCTGAATTC  818
      |||||||||||||||||||
seq2  TGTTCACCAGGCTGAATTC  818

seq1: chr1_175258871_175259054
seq2: B6Ng01-007F23.g_71_251

seq1  CTCGGGGGCTACGGAAGAAAGGTGTTGGGATACAGAGAAGGAGGGTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGGCTACGGAAGAAAGGTGTTGGGATACAGAGAAGGAGGGTATAG  50

seq1  GTATGAAGGGGGATGAAAGGATTTGCGAAACAGACATTTGTTTCCTAAAT  100
      |||||||||||||||  | | |||||| ||||||||||||||||||||||
seq2  GTATGAAGGGGGATG--ACGCTTTGCG-AACAGACATTTGTTTCCTAAAT  97

seq1  CCTGGAGGGTATGGGGCTCAGTCAGAAATAAATTAATTATAAACATCAAT  150
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CCTGGAGGGTATGGTGCTCATTCAGAAATAAATTAATTATAAACATCAAT  147

seq1  GTGATATTCAAACTTTCCTCAAGAAAAAAAAAAT  184
      ||| |||||||||||||||| |||||||||||||
seq2  GTGTTATTCAAACTTTCCTCTAGAAAAAAAAAAT  181