BAC Information

Click to search

BAC

Clone NameB6Ng01-007I07
Chromosome1 (Build37)
Map Location 184,357,262 - 184,458,713
singlet/doubletdoublet
Overlap geneTrp53bp2, Capn2, LOC666624
Upstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482
Downstream geneCapn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007I07.bB6Ng01-007I07.g
ACCDH844063DH844064
length611770
definitionDH844063|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I07, 5' end.DH844064|Mus musculus domesticus DNA, BAC clone: B6Ng01-007I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(184,357,262 - 184,357,872)(184,457,944 - 184,458,713)
sequence
gaattctctggttaagtgtgctgggtgttctggcccagcagcaacagagt
cgcattctctaggcttggttaatctttattttttccagtattgtcaaggc
actatgtgtaaggagcttatatgcagccttgttggctaagttgaggcttt
aggatccacatttcatgtggtacagttatcagaatgcacaaagcccgagg
tgcattctgttcatactaggaatcttgacagcattttagcttcttctata
tgattgacttactgttttaacagaatccacgttaatgtttctggatgact
ttgtatgtgataggtgttttatatgcattaggggacacctttgcaaaaaa
gggaggtgaagggtcccaaggaaatgggctaagtccaggtgcctccaaat
cttctggtccccagtgtgatgtccttctcagtgctgctttcacagtgagg
ctacgcagctttctcactgggagggtggccagaggagtttcagcctgcaa
gggaggtcaagtgacttttggcaaaccctctagctctgtaatgctactgt
ggcactgtaaccagagtgtggattcaacacattctgctgtgagtgtgtga
gtgtgtgtgtg
gaattccttccggtttatgggctcacacctcaggagggaaatcagaaagc
tcccctcctggtgtgatttgcattttaattagtgccgagtctgctctagg
cactcccttttggtcgtgagtcaggaggccgaggcctccctgcagaacct
gctcagggctggacttcaaccacaccctcagtccattcagactgggcaca
gcccaaagagcagaggcccagtgaactgtctcaggggagcctgatagccc
catccccagctgacaccaagccctcctaaaagggctggaccaccagcctt
cagctgcccatccacagatagtggactagatgagcgggaaggtcctgcct
ccagccccctcagaacctctcttgtgaaaactaaggaacctgtgctctga
gtcagcagctgtggagacacataactgagtgtgactcagccccaggctca
gctctgaggttccccgcagattatgcccttttttggccccaggcagggtt
tccctcttctctcctaagtgctgatgggcagagcctcaaacagccccgga
tgagcagcgctgttgctcacaggctccctctctagaagggctgggtgcaa
ggaacgactccccaggacttcagatcctacgggaggatgaaggggcacca
cggaacctcctctagccgtgcctcagagaccaagctaatgtttagtgaac
ggacaaccccaagtccgtacctccttgggtgtataaaggggaaaaggaag
gagaaagggagagggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_184357262_184357872
seq2: B6Ng01-007I07.b_45_655

seq1  GAATTCTCTGGTTAAGTGTGCTGGGTGTTCTGGCCCAGCAGCAACAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTTAAGTGTGCTGGGTGTTCTGGCCCAGCAGCAACAGAGT  50

seq1  CGCATTCTCTAGGCTTGGTTAATCTTTATTTTTTCCAGTATTGTCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCTCTAGGCTTGGTTAATCTTTATTTTTTCCAGTATTGTCAAGGC  100

seq1  ACTATGTGTAAGGAGCTTATATGCAGCCTTGTTGGCTAAGTTGAGGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGTAAGGAGCTTATATGCAGCCTTGTTGGCTAAGTTGAGGCTTT  150

seq1  AGGATCCACATTTCATGTGGTACAGTTATCAGAATGCACAAAGCCCGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCACATTTCATGTGGTACAGTTATCAGAATGCACAAAGCCCGAGG  200

seq1  TGCATTCTGTTCATACTAGGAATCTTGACAGCATTTTAGCTTCTTCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTGTTCATACTAGGAATCTTGACAGCATTTTAGCTTCTTCTATA  250

seq1  TGATTGACTTACTGTTTTAACAGAATCCACGTTAATGTTTCTGGATGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACTTACTGTTTTAACAGAATCCACGTTAATGTTTCTGGATGACT  300

seq1  TTGTATGTGATAGGTGTTTTATATGCATTAGGGGACACCTTTGCAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTGATAGGTGTTTTATATGCATTAGGGGACACCTTTGCAAAAAA  350

seq1  GGGAGGTGAAGGGTCCCAAGGAAATGGGCTAAGTCCAGGTGCCTCCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGAAGGGTCCCAAGGAAATGGGCTAAGTCCAGGTGCCTCCAAAT  400

seq1  CTTCTGGTCCCCAGTGTGATGTCCTTCTCAGTGCTGCTTTCACAGTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTCCCCAGTGTGATGTCCTTCTCAGTGCTGCTTTCACAGTGAGG  450

seq1  CTACGCAGCTTTCTCACTGGGAGGGTGGCCAGAGGAGTTTCAGCCTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCAGCTTTCTCACTGGGAGGGTGGCCAGAGGAGTTTCAGCCTGCAA  500

seq1  GGGAGGTCAAGTGACTTTTGGCAAACCCTCTAGCTCTGTAATGCTACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTCAAGTGACTTTTGGCAAACCCTCTAGCTCTGTAATGCTACTGT  550

seq1  GGCACTGTAACCAGAGTGTGGATTCAACACATTCTGCTGTGAGTGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTAACCAGAGTGTGGATTCAACACATTCTGCTGTGAGTGTGTGA  600

seq1  GTGTGTGTGTG  611
      |||||||||||
seq2  GTGTGTGTGTG  611

seq1: chr1_184457944_184458713
seq2: B6Ng01-007I07.g_66_835 (reverse)

seq1  TTTCTCCCTCTCCCTTTCTCCTTCCTTTT-CCCTTTATACACCCAAGGAG  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCTCCCTCTCCCTTTCTCCTTCCTTTTCCCCTTTATACACCCAAGGAG  50

seq1  GTACGGACTTGGGGTTGTCCGTTCACTAAAACATTAGCTTGGTCTCTGAG  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTACGGACTTGGGGTTGTCCGTTCACT-AAACATTAGCTTGGTCTCTGAG  99

seq1  GCACGGCTAGAGGAGGTTCCGTGGTGCCCCTTCATCCTCCCGTAGGATCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCTAGAGGAGGTTCCGTGGTGCCCCTTCATCCTCCCGTAGGATCT  149

seq1  GAAGTCCTGGGGAGTCGTTCCTTGCACCCAGCCCTTCTAGAGAGGGAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCTGGGGAGTCGTTCCTTGCACCCAGCCCTTCTAGAGAGGGAGCC  199

seq1  TGTGAGCAACAGCGCTGCTCATCCGGGGCTGTTTGAGGCTCTGCCCATCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCAACAGCGCTGCTCATCCGGGGCTGTTTGAGGCTCTGCCCATCA  249

seq1  GCACTTAGGAGAGAAGAGGGAAACCCTGCCTGGGGCCAAAAAAGGGCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGGAGAGAAGAGGGAAACCCTGCCTGGGGCCAAAAAAGGGCATA  299

seq1  ATCTGCGGGGAACCTCAGAGCTGAGCCTGGGGCTGAGTCACACTCAGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGGGGAACCTCAGAGCTGAGCCTGGGGCTGAGTCACACTCAGTTA  349

seq1  TGTGTCTCCACAGCTGCTGACTCAGAGCACAGGTTCCTTAGTTTTCACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCCACAGCTGCTGACTCAGAGCACAGGTTCCTTAGTTTTCACAA  399

seq1  GAGAGGTTCTGAGGGGGCTGGAGGCAGGACCTTCCCGCTCATCTAGTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTCTGAGGGGGCTGGAGGCAGGACCTTCCCGCTCATCTAGTCCA  449

seq1  CTATCTGTGGATGGGCAGCTGAAGGCTGGTGGTCCAGCCCTTTTAGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGGATGGGCAGCTGAAGGCTGGTGGTCCAGCCCTTTTAGGAGG  499

seq1  GCTTGGTGTCAGCTGGGGATGGGGCTATCAGGCTCCCCTGAGACAGTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGTCAGCTGGGGATGGGGCTATCAGGCTCCCCTGAGACAGTTCA  549

seq1  CTGGGCCTCTGCTCTTTGGGCTGTGCCCAGTCTGAATGGACTGAGGGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCTGCTCTTTGGGCTGTGCCCAGTCTGAATGGACTGAGGGTGT  599

seq1  GGTTGAAGTCCAGCCCTGAGCAGGTTCTGCAGGGAGGCCTCGGCCTCCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGTCCAGCCCTGAGCAGGTTCTGCAGGGAGGCCTCGGCCTCCTG  649

seq1  ACTCACGACCAAAAGGGAGTGCCTAGAGCAGACTCGGCACTAATTAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGACCAAAAGGGAGTGCCTAGAGCAGACTCGGCACTAATTAAAAT  699

seq1  GCAAATCACACCAGGAGGGGAGCTTTCTGATTTCCCTCCTGAGGTGTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCACACCAGGAGGGGAGCTTTCTGATTTCCCTCCTGAGGTGTGAG  749

seq1  CCCATAAACCGGAAGGAATTC  770
      |||||||||||||||||||||
seq2  CCCATAAACCGGAAGGAATTC  770