BAC Information

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BAC

Clone NameB6Ng01-007M11
Chromosome1 (Build37)
Map Location 76,946,329 - 77,055,484
singlet/doubletdoublet
Overlap geneLOC100039137
Upstream genenone
Downstream geneTfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007M11.bB6Ng01-007M11.g
ACCDH844246DH844247
length881973
definitionDH844246|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M11, 5' end.DH844247|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,054,604 - 77,055,484)(76,946,329 - 76,947,249)
sequence
gaattccaagtggattttattggttcttggatggtgatagcttccattca
ctgtaacaacacgcccaagacagttcatttacagaggaaaagcttctctt
ggttcacagttctagtaactctggctgaggattgtattgacatgtgcttt
gggccttggggccagcaagtactagatggaaaattcgggatgtgtgtggt
agtaacaaagagtcatctcatatcaaaaatataaaaaagatggaaggaca
tgctgagtattgacaacacacttcaagagtctgcccatgaggctccacct
cttaaagatttcatcattttctaatagggatctcgtctttaagtggctaa
tcaacaacattcaacctagaccattcaacacctggctttcagcgacacct
gtttatttcacaatgaaaagtgcactcatgcagtcctcgagaatacctga
agttctaggtgtcccagcaccgctcaaaactcctctggtggttttctgta
agctagatgcaaaatgggttcccagccctgtcggaaaactgaaagaaagt
tcctcatttctggatgtatgaaaggactgtgtagtgttaagacaggcaca
tgctaagcatctctagtccaaaagggagaaaatagaaaaacatggagggt
aaggtcaaagtgaggctgaaagccagaaggggagacattaagccctcaag
tatcatgcctgacatgttgtgaggacactccaagggacagttctactaag
cctttctgcatccttgacacaagaggctcttgggaggagaaactgagcca
ctgctgaactggaggaggcttcattattcgctggcttgtgtgtggcttct
gtcctgaaatgcaatgttctgggctccagag
gaattctataactagggtccatttacatatagatagagtccaaaattatg
gtaactgaagctattaaataagaagaaagttagaaaaggaagaaaaatgt
cctaaactactcacacatttcaaatgtgttgaaatagttaattctttgaa
agcacatgtagaattccaagaaaagaatttacgtttatacactgttcaca
aatcctagaaaagatatacatttctgtttttttaattgaggtaaaattat
ttctaatgggatatctgatttattgaccaatgaaaccaagacagtgatca
aagagatacaaagaagtttattcgttagtctttgagatccacctctgttt
ctcactatttttggatagttaccatcagctagaatgaatttttttcaaca
ataaaataattaaaacataaaacatagtagatgttggagtctgggaattg
ccacacaaaccattcaaacaccaatctcaatcaaatagatttcctgaaca
ccacacccaaagacggatcaaccagggacaggactcaggctcaggagctg
aaccatgatcctgagttaaggtcctacagggctttttaggcctgagacct
ataaacctctgcatcaagttattccagcaatcaacacttagggataagga
cttccttaggaacatgtctttgttgtgcgtttatcctgcttccattggtt
ggggtattccatggtcacagggaacttgccttgtgtaactttcatgtctt
aacttgctaaccaggatgccagttacccacatacatgtctctttctgcca
agcaagggtgtcagttcctatgggaggtcttgggaattcaaacttcatta
gactcctttcctactcaaaatgggaggtcttatgttagatagatgcgggt
ggtctcttcttctgttggggtctcataccaggtacaacttagaaaggcaa
ataccatgaaagcttacacagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77054604_77055484
seq2: B6Ng01-007M11.b_36_916 (reverse)

seq1  CTCTGGAGCCCAGAACATTGCATTTCAGGACAGCAGCCACACACAAGCCA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTGGAGCCCAGAACATTGCATTTCAGGACAGAAGCCACACACAAGCCA  50

seq1  GCGAATACTGAAGCCTCCTCCAGTTTCAGCAGTGGCTCAGTTTCTCCT-C  99
      ||||||| ||||||||||||||| |||||||||||||||||||||||| |
seq2  GCGAATAATGAAGCCTCCTCCAG-TTCAGCAGTGGCTCAGTTTCTCCTCC  99

seq1  CAAGAGCCTCTTGTTGTC-AGGATGCAGAAAGGCTTAGTAGAACTGTCCC  148
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  CAAGAGCCTCTTG-TGTCAAGGATGCAGAAAGGCTTAGTAGAACTGTCCC  148

seq1  TTGGAGTGTCCTCACATACATGTCAGGCATGATACTTGAGGGCTTAATGT  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGAGTGTCCTCACA-ACATGTCAGGCATGATACTTGAGGGCTTAATGT  197

seq1  CTCCCCTTCTGGCTTTCAGCCTCACTTTGACCTTACCCTCCATGTTTTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTCTGGCTTTCAGCCTCACTTTGACCTTACCCTCCATGTTTTTC  247

seq1  TA-TTTCTCCCTTTTGGACTAGAGATGCTTAGCATGTGCCTGTCTTAACA  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCCCTTTTGGACTAGAGATGCTTAGCATGTGCCTGTCTTAACA  297

seq1  CTACACAGTCCTTTCATACATCCAGAAATGAGGAACTTTCTTTCAGTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTCCTTTCATACATCCAGAAATGAGGAACTTTCTTTCAGTTTT  347

seq1  CCGACAGGGCTGGGAACCCATTTTGCATCTAGCTTACAGAAAACCACCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAGGGCTGGGAACCCATTTTGCATCTAGCTTACAGAAAACCACCAG  397

seq1  AGGAGTTTTGAGCGGTGCTGGGACACCTAGAACTTCAGGTATTCTCGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTGAGCGGTGCTGGGACACCTAGAACTTCAGGTATTCTCGAGG  447

seq1  ACTGCATGAGTGCACTTTTCATTGTGAAATAAACAGGTGTCGCTGAAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGAGTGCACTTTTCATTGTGAAATAAACAGGTGTCGCTGAAAGC  497

seq1  CAGGTGTTGAATGGTCTAGGTTGAATGTTGTTGATTAGCCACTTAAAGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTTGAATGGTCTAGGTTGAATGTTGTTGATTAGCCACTTAAAGAC  547

seq1  GAGATCCCTATTAGAAAATGATGAAATCTTTAAGAGGTGGAGCCTCATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCTATTAGAAAATGATGAAATCTTTAAGAGGTGGAGCCTCATGG  597

seq1  GCAGACTCTTGAAGTGTGTTGTCAATACTCAGCATGTCCTTCCATCTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTCTTGAAGTGTGTTGTCAATACTCAGCATGTCCTTCCATCTTTT  647

seq1  TTATATTTTTGATATGAGATGACTCTTTGTTACTACCACACACATCCCGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTGATATGAGATGACTCTTTGTTACTACCACACACATCCCGA  697

seq1  ATTTTCCATCTAGTACTTGCTGGCCCCAAGGCCCAAAGCACATGTCAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATCTAGTACTTGCTGGCCCCAAGGCCCAAAGCACATGTCAATA  747

seq1  CAATCCTCAGCCAGAGTTACTAGAACTGTGAACCAAGAGAAGCTTTTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCAGCCAGAGTTACTAGAACTGTGAACCAAGAGAAGCTTTTCCT  797

seq1  CTGTAAATGAACTGTCTTGGGCGTGTTGTTACAGTGAATGGAAGCTATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATGAACTGTCTTGGGCGTGTTGTTACAGTGAATGGAAGCTATCA  847

seq1  CCATCCAAGAACCAATAAAATCCACTTGGAATTC  881
      ||||||||||||||||||||||||||||||||||
seq2  CCATCCAAGAACCAATAAAATCCACTTGGAATTC  881

seq1: chr1_76946329_76947249
seq2: B6Ng01-007M11.g_67_994

seq1  GAATTCTATAACTAGGGTCCATTTACATATAGATAGAGTCCAAAATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAACTAGGGTCCATTTACATATAGATAGAGTCCAAAATTATG  50

seq1  GTAACTGAAGCTATTAAATAAGAAGAAAGTTAGAAAAGGAAGAAAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGAAGCTATTAAATAAGAAGAAAGTTAGAAAAGGAAGAAAAATGT  100

seq1  CCTAAACTACTCACACATTTCAAATGTGTTGAAATAGTTAATTCTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTACTCACACATTTCAAATGTGTTGAAATAGTTAATTCTTTGAA  150

seq1  AGCACATGTAGAATTCCAAGAAAAGAATTTACGTTTATACACTGTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTAGAATTCCAAGAAAAGAATTTACGTTTATACACTGTTCACA  200

seq1  AATCCTAGAAAAGATATACATTTCTGTTTTTTTAATTGAGGTAAAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGAAAAGATATACATTTCTGTTTTTTTAATTGAGGTAAAATTAT  250

seq1  TTCTAATGGGATATCTGATTTATTGACCAATGAAACCAAGACAGTGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGGGATATCTGATTTATTGACCAATGAAACCAAGACAGTGATCA  300

seq1  AAGAGATACAAAGAAGTTTATTCGTTAGTCTTTGAGATCCACCTCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATACAAAGAAGTTTATTCGTTAGTCTTTGAGATCCACCTCTGTTT  350

seq1  CTCACTATTTTTGGATAGTTACCATCAGCTAGAATGAATTTTTTTCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATTTTTGGATAGTTACCATCAGCTAGAATGAATTTTTTTCAACA  400

seq1  ATAAAATAATTAAAACATAAAACATAGTAGATGTTGGAGTCTGGGAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTAAAACATAAAACATAGTAGATGTTGGAGTCTGGGAATTG  450

seq1  CCACACAAACCATTCAAACACCAATCTCAATCAAATAGATTTCCTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAACCATTCAAACACCAATCTCAATCAAATAGATTTCCTGAACA  500

seq1  CCACACCCAAAGACGGATCAACCAGGGACAGGACTCAGGCTCAGGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCAAAGACGGATCAACCAGGGACAGGACTCAGGCTCAGGAGCTG  550

seq1  AACCATGATCCTGAGTTAAGGTCCTACAGGGCTTTTTAGGCCTGAGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGATCCTGAGTTAAGGTCCTACAGGGCTTTTTAGGCCTGAGACCT  600

seq1  ATAAACCTCTGCATCAAGTTATTCCAGCAATCAACACTTAGGGATAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTCTGCATCAAGTTATTCCAGCAATCAACACTTAGGGATAAGGA  650

seq1  CTTCCTTAGGAACATGTCTTTGTTGTGCGTTTATCCTGCTTCCATTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAGGAACATGTCTTTGTTGTGCGTTTATCCTGCTTCCATTGGTT  700

seq1  GGGGTATTCCATGGTCACAGGGAACTTGCCTTGTGTAACTTTCATGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATTCCATGGTCACAGGGAACTTGCCTTGTGTAACTTTCATGTCTT  750

seq1  AACTTGCTAACCAGGATGCCAGTTACCCACATACATGTCTCTTTCTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTAACCAGGATGCCAGTTACCCACATACATGTCTCTTTCTGCCA  800

seq1  AGC-AGGGTGTCAGTTCCTAT-GGAGGTCTTGGGAATTCAAACTTCATTA  848
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAAGGGTGTCAGTTCCTATGGGAGGTCTTGGGAATTCAAACTTCATTA  850

seq1  GACTCC-TTCCTACTCAAAAT-GGAAGTCTTATGTTAGATAGATGCGGGT  896
      |||||| |||||||||||||| ||| ||||||||||||||||||||||||
seq2  GACTCCTTTCCTACTCAAAATGGGAGGTCTTATGTTAGATAGATGCGGGT  900

seq1  -GTCTC-TCTTCTGTTGGGGTC-CATAC  921
       ||||| ||||||||||||||| |||||
seq2  GGTCTCTTCTTCTGTTGGGGTCTCATAC  928