BAC Information

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BAC

Clone NameB6Ng01-008F09
Chromosome1 (Build37)4 (Build37)
Map Location 105,422,021 - 105,423,13715,583,469 - 15,583,706
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream geneLOC383546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008F09.bB6Ng01-008F09.g
ACCDH844623DH844624
length1,128554
definitionDH844623|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F09, 5' end.DH844624|Mus musculus domesticus DNA, BAC clone: B6Ng01-008F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,422,021 - 105,423,137)(15,583,469 - 15,583,706)
sequence
gaattcttcatctgacaagggagggagaaggcgtcatctccaagaagaaa
ggaagacctgggaaaggagaggcaccccccaaacaatggggcatccttgg
aagtgactcacaggattgggtatttggagcttggagaggttgcattctgt
ggtcatgaagtaaccgaggtggagtgataggaacagcatccacccacaaa
actttcgatcaaaaacttaacctgttgacaagaaatacgaatggagcaga
cactgagggaatagacaaccaataagcagccgcacttgagacccatccaa
tgggcaagcgccaatccttgacacttctaatgatattctgttatgcttgc
agagagaagtctagcatagcttctaagagactctacccaccagctaacta
aggctagagtgaggagatgcctagatagcctcatcctgctcagagaaaga
gggggaggctgaccaagatggggggcaatgagaggaatgtaaagcagata
agtaaaaataaaattaaaaaaaaaggtaatttctaatatagactacttca
gactgtcaggatatgtagccatgtgttgtgtgacagtattcatgaggaat
cagaaataaatgtctacatacccaagacatttaattaacaatgaaatcat
gtaacgattgtatcaaagttcaaatcaggaacttctttgtgagttcactg
gggttgcttctagaagtgaggagggttacttacaggagcaggaaagattc
aaaggcatctaaaaactcacagtagctgggttgatgactcatgaagctat
aaatccctaggctctttgcatgccttgcaggcagcactacagcttgggga
gtgtattcagttagtctctttgatctctcaggcagtattggtagactctt
caggcagctggggtcaatttctgtctcttcagaagtccttactcctttat
gctgccacaagcaggtactggccttgtgtatatctggtcagaattaagac
ttctaatgactccaaagttttcctacttcctgaaaggtagcagctgcctc
cggaaccctctattcatgaacattaaattcgaggacttttatagcttaat
ataaagatatgaatgggctgagatttct
gaattcacaaacagcaagtagagagagagacttagaggcttgcttgagct
ttttttttttttaattaggtaatttctgcatttacatttcaaatgctatc
ccaaaagtcccccatacccctccccactcccctacccacccactccgact
tcttgaccctggcgttcccctgtactgaggcacatagcttgagcttttaa
aatgccagatccaccctaatgacacacttggtccaacaaggccacatcaa
ctaatccctgtcaagaagtgccactcccagagactctgcattgtaattca
taaagctatgaagcccactcccattcaaaaatatctagtatttgctatat
tagggctcatgctaactaaacattccatgagattatgcagtaactccagc
caatttttagtatacaaaataaatatatacacaaataagtgaatatacat
tttatatttatctatctgcttattatttactatttagtgtgagtgaatgt
gtgtgtgtttgtgtgtggggggatgtaagtagatgcatatatgcaagagt
gtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105422021_105423137
seq2: B6Ng01-008F09.b_57_1174

seq1  TCTGACAAGGGAGGGAGAAGGCGTCATCTCCAAGAAGAAAGGAAGACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGGGAGGGAGAAGGCGTCATCTCCAAGAAGAAAGGAAGACCTG  50

seq1  GGAAAGGAGAGGCACCCCCCAAACAATGGGGCATCCTTGGAAGTGACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGAGGCACCCCCCAAACAATGGGGCATCCTTGGAAGTGACTCA  100

seq1  CAGGATTGGGTATTTGGAGCTTGGAGAGGTTGCATTCTGTGGTCATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGGGTATTTGGAGCTTGGAGAGGTTGCATTCTGTGGTCATGAAG  150

seq1  TAACCGAGGTGGAGTGATAGGAACAGCATCCACCCACAAAACTTTCGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGAGGTGGAGTGATAGGAACAGCATCCACCCACAAAACTTTCGATC  200

seq1  AAAAACTTAACCTGTTGACAAGAAATACGAATGGAGCAGACACTGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTAACCTGTTGACAAGAAATACGAATGGAGCAGACACTGAGGGA  250

seq1  ATAGACAACCAATAAGCAGCCGCACTTGAGACCCATCCAATGGGCAAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAACCAATAAGCAGCCGCACTTGAGACCCATCCAATGGGCAAGCG  300

seq1  CCAATCCTTGACACTTCTAATGATATTCTGTTATGCTTGCAGAGAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTTGACACTTCTAATGATATTCTGTTATGCTTGCAGAGAGAAGT  350

seq1  CTAGCATAGCTTCTAAGAGACTCTACCCACCAGCTAACTAAGGCTAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATAGCTTCTAAGAGACTCTACCCACCAGCTAACTAAGGCTAGAGT  400

seq1  GAGGAGATGCCTAGATAGCCTCATCCTGCTCAGAGAAAGAGGGGGAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGCCTAGATAGCCTCATCCTGCTCAGAGAAAGAGGGGGAGGCT  450

seq1  GACCAAGATGGGGGGCAATGAGAGGAATGTAAAGCAGATAAGTAAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGATGGGGGGCAATGAGAGGAATGTAAAGCAGATAAGTAAAAATA  500

seq1  AAATTAAAAAAAAAGGTAATTTCTAATATAGACTACTTCAGACTGTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAAAGGTAATTTCTAATATAGACTACTTCAGACTGTCAGG  550

seq1  ATATGTAGCCATGTGTTGTGTGACAGTATTCATGAGGAATCAGAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGCCATGTGTTGTGTGACAGTATTCATGAGGAATCAGAAATAAA  600

seq1  TGTCTACATACCCAAGACATTTAATTAACAATGAAATCATGTAACGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACATACCCAAGACATTTAATTAACAATGAAATCATGTAACGATTG  650

seq1  TATCAAAGTTCAAATCAGGAACTTCTTTGTGAGTTCACTGGGGTTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGTTCAAATCAGGAACTTCTTTGTGAGTTCACTGGGGTTGCTTC  700

seq1  TAGAAGTGAGGAGGGTTACTTACAGGAGCAGGAAAGATTCAAAGGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGAGGAGGGTTACTTACAGGAGCAGGAAAGATTCAAAGGCATCT  750

seq1  AAAAACTCACAGTAGCTGGGTTGATGACTCATGAAGCTATAAATCCCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCACAGTAGCTGGGTTGATGACTCATGAAGCTATAAATCCCTAG  800

seq1  GCTCTTTGCATGCCTTGCAGGCAGCACTACAGCTTGGGGAGTGTATTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGCATGCCTTGCAGGCAGCACTACAGCTTGGGGAGTGTATTCAG  850

seq1  TTAGTCTCTTTGATCTCCCAGGCAGTATTGGTAGACTC-TCAGGCAGCT-  898
      ||||||||||||||||| |||||||||||||||||||| |||||||||| 
seq2  TTAGTCTCTTTGATCTCTCAGGCAGTATTGGTAGACTCTTCAGGCAGCTG  900

seq1  GGGTCAATTTCTGTCTCTTCAGAAGTCCTTACTCC-TTATGCTGCCAC-A  946
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  GGGTCAATTTCTGTCTCTTCAGAAGTCCTTACTCCTTTATGCTGCCACAA  950

seq1  GCAGGTACTGGCCTTGTGTATATCTGGTCAGAATTAGGAACTTCTAATGA  996
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  GCAGGTACTGGCCTTGTGTATATCTGGTCAGAATTAAG-ACTTCTAATGA  999

seq1  CTCCAAAG-TTTCCTACTTCCTGAGAGTTAAGAAGCTGCCTCCAGAACAC  1045
      |||||||| ||||||||||||||| || | || |||||||||| |||| |
seq2  CTCCAAAGTTTTCCTACTTCCTGAAAGGT-AGCAGCTGCCTCCGGAACCC  1048

seq1  TCTATTCATGACCATTAATTTACAAATGACTTTTATAGCTTAATATTAAA  1095
      ||||||||||| |||||| ||    | |||||||||||||||||| ||||
seq2  TCTATTCATGAACATTAAATT--CGAGGACTTTTATAGCTTAATA-TAAA  1095

seq1  GTATATG-ATTGGCTGA-TTTTCT  1117
      | ||||| || ||||||  |||||
seq2  G-ATATGAATGGGCTGAGATTTCT  1118

seq1: chr4_15583469_15583706
seq2: B6Ng01-008F09.g_109_250 (reverse)

seq1  TGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTA  50
      ||||||||||||||||||| |||||| |||||||| ||||||||||||||
seq2  TGCCTCAGTACAGGGGAACGCCAGGGTCAAGAAGTCGGAGTGGGTGGGTA  50

seq1  GGGGAGTGGATGGGGGAGTGCGTGGGGGACTTTTGGGATAGCATTGGAAA  100
      |||||||||  || || ||   ||||||||||||||||||||||| ||||
seq2  GGGGAGTGG--GGAGGGGT--ATGGGGGACTTTTGGGATAGCATTTGAAA  96

seq1  TGTAAATGAAATAAATACCCAATTTTTAAAATTAATTAATTAATTAATTT  150
      |||||||| |  || |||| ||||   ||||          ||  ||  |
seq2  TGTAAATGCAGAAATTACCTAATTAAAAAAA----------AAAAAAGCT  136

seq1  CAAGTGTCCTTCTTACTACCCAGCTGAATTTGTAGACTTATTTGTCATCT  200
      ||||                                              
seq2  CAAGCA--------------------------------------------  142

seq1  TCAAAGACTGTGGTTCATAAAAAAAAAAAAAGCAAGCA  238
                                            
seq2  --------------------------------------  142