BAC Information

Click to search

BAC

Clone NameB6Ng01-008G24
Chromosome1 (Build37)
Map Location 192,796,243 - 192,922,631
singlet/doubletdoublet
Overlap geneVash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik
Upstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2
Downstream gene4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008G24.bB6Ng01-008G24.g
ACCDH844694DH844695
length919917
definitionDH844694|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G24, 5' end.DH844695|Mus musculus domesticus DNA, BAC clone: B6Ng01-008G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,796,243 - 192,797,161)(192,921,713 - 192,922,631)
sequence
gaattctctgtccaacaaacactagcaattgtggagacttccttgttttt
tcacagtaacacccacatgtctaacaaacctctgtaagaaccgaccagag
gtttcagagaggtgagaaaagaaagtaggcggaggaacagccttccttag
catctccatatggtaagctataggcaggtatagagcaggaagcacgggag
cagggaaggaagggagagagggataaatcccatcagagaaaagtggagag
gtgagggacgggacctgagagagagttcttgcacgtgtagccagtgactt
ggctcagagtcctctttgggagctgagctgacctccgagttatttccagc
cccctccactcagggatcccacagagcagggtgtgaagcaggactcagaa
agcagctgggcctcagaatagcagccaatggcgcccacgggatttagaag
aacagctgcagttacctcagctgcctgtggtcacacttgctcccaagcag
gaggacaaatgcaagagttccccacacgggctgcagcagggctcactgta
ggatatcatccattgcaattcaccctgatgtccggcaagctggctggggc
tcagcaccttaggcagcctgtgttcctgctggatctggatgtaagccaga
ggggctccctgaaggggttatgatgaaacaaacacagtggttggaaatct
cctaccagctatggacatgacaggaccccagagcctccactttgcatcca
gataaatagcaacactgcctcttctgctctgggagctgctgtgaggacaa
catggcctgctgttatgagaaaggcataaggcgagcactgcaggtagggc
actcgtaatagctgggcattattcatcactaatatgcttcccagagctgc
actatagaggctagaatca
gaattcataatatcggagctccgggccccctcccaccagcgcccacagga
gtcaaggatgaaactgcccacagcagcgcggacccacgtgttcggcgccg
agtctggaggggctgccgccttcccaagcgcttgaggcgcacggcggggg
cgcacggcgggggcgcacctggagctctgccctcaccctcacccggtcct
cacacccggcccccttgtccaatacctgcggctggttcccgggcgcatcc
acgcttctctgcagcacgctgaccgcggggggcccttgcgacatgccgcg
cgctcgccacacggggcgccctgaacgtggggctctgctacccgcgctcc
gcccgcatccccgcacttgctgccccgccccgccccgccgcttcccgctc
tccgggctccacggtgcccgcctccccaccccgtgtccagtcccggcccg
gcccggccccgccccctactcccaccccgcccctgcttcctcctcccccc
accctctcgccgcacctcggggtccaggatcccacccaagtcgctgcttt
ccgctaagggcccccgctcttcgtggaagtcacgtggcagcaccgaagcc
cacccacggagaagaccccgagtgggtggagacggggtgctggcgcagcg
ccgccgtggacggtccttcggccgctcctgggaagtttgggtgagaaagc
accagtgagtggctcggggcttcaatgtccccttcgcagcctccccttag
cgccccagcgccggtcaccgcccgatggggagatttctttcgggcgaggc
ggcacctggaccggtggcgcctgtgggcagggaccgcagcaaaaaccgtc
cgcgctatggggacacgggagctcagggcttttcactgcggcggcgcctg
gccatgggagggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_192796243_192797161
seq2: B6Ng01-008G24.b_46_964

seq1  GAATTCTCTGTCCAACAAACACTAGCAATTGTGGAGACTTCCTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCCAACAAACACTAGCAATTGTGGAGACTTCCTTGTTTTT  50

seq1  TCACAGTAACACCCACATGTCTAACAAACCTCTGTAAGAACCGACCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTAACACCCACATGTCTAACAAACCTCTGTAAGAACCGACCAGAG  100

seq1  GTTTCAGAGAGGTGAGAAAAGAAAGTAGGCGGAGGAACAGCCTTCCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAGAGGTGAGAAAAGAAAGTAGGCGGAGGAACAGCCTTCCTTAG  150

seq1  CATCTCCATATGGTAAGCTATAGGCAGGTATAGAGCAGGAAGCACGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCATATGGTAAGCTATAGGCAGGTATAGAGCAGGAAGCACGGGAG  200

seq1  CAGGGAAGGAAGGGAGAGAGGGATAAATCCCATCAGAGAAAAGTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGAAGGGAGAGAGGGATAAATCCCATCAGAGAAAAGTGGAGAG  250

seq1  GTGAGGGACGGGACCTGAGAGAGAGTTCTTGCACGTGTAGCCAGTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGACGGGACCTGAGAGAGAGTTCTTGCACGTGTAGCCAGTGACTT  300

seq1  GGCTCAGAGTCCTCTTTGGGAGCTGAGCTGACCTCCGAGTTATTTCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGTCCTCTTTGGGAGCTGAGCTGACCTCCGAGTTATTTCCAGC  350

seq1  CCCCTCCACTCAGGGATCCCACAGAGCAGGGTGTGAAGCAGGACTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCACTCAGGGATCCCACAGAGCAGGGTGTGAAGCAGGACTCAGAA  400

seq1  AGCAGCTGGGCCTCAGAATAGCAGCCAATGGCGCCCACGGGATTTAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGGGCCTCAGAATAGCAGCCAATGGCGCCCACGGGATTTAGAAG  450

seq1  AACAGCTGCAGTTACCTCAGCTGCCTGTGGTCACACTTGCTCCCAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGCAGTTACCTCAGCTGCCTGTGGTCACACTTGCTCCCAAGCAG  500

seq1  GAGGACAAATGCAAGAGTTCCCCACACGGGCTGCAGCAGGGCTCACTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAATGCAAGAGTTCCCCACACGGGCTGCAGCAGGGCTCACTGTA  550

seq1  GGATATCATCCATTGCAATTCACCCTGATGTCCGGCAAGCTGGCTGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCATCCATTGCAATTCACCCTGATGTCCGGCAAGCTGGCTGGGGC  600

seq1  TCAGCACCTTAGGCAGCCTGTGTTCCTGCTGGATCTGGATGTAAGCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCTTAGGCAGCCTGTGTTCCTGCTGGATCTGGATGTAAGCCAGA  650

seq1  GGGGCTCCCTGAAGGGGTTATGATGAAACAAACACAGTGGTTGG-AATCT  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGCTCCCTGAAGGGGTTATGATGAAACAAACACAGTGGTTGGAAATCT  700

seq1  CCTACCAGCTATGGACATGACAGGACCCCAGAGCCTCCAC-TTGCATCCA  748
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTACCAGCTATGGACATGACAGGACCCCAGAGCCTCCACTTTGCATCCA  750

seq1  GATAAATAGCAACACTGCCTCTTCTGCTCTGGGAGCTGCTGTGAGGACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAGCAACACTGCCTCTTCTGCTCTGGGAGCTGCTGTGAGGACAA  800

seq1  CATGGCCTGCTGTTATGAG-AAGGCAGCAGGGCGAGCACTGCAGGTAGGG  847
      ||||||||||||||||||| ||||||  | ||||||||||||||||||||
seq2  CATGGCCTGCTGTTATGAGAAAGGCA-TAAGGCGAGCACTGCAGGTAGGG  849

seq1  CACCGGTATAAGCTGGGCCATTATCCATCACTAACATGCTCCCAGGAGCT  897
      |||  |||  ||||||| |||||| ||||||||| ||||| ||  |||||
seq2  CACTCGTAATAGCTGGG-CATTATTCATCACTAATATGCTTCCCAGAGCT  898

seq1  GCACTATAGAGGCTCAGAATCA  919
      |||||||||||||| |||||||
seq2  GCACTATAGAGGCT-AGAATCA  919

seq1: chr1_192921713_192922631
seq2: B6Ng01-008G24.g_68_984 (reverse)

seq1  CCCCTCCCTCCCACTGGACCAGACGCCGCCGCAGTGGAAAAGCCCTGAGG  50
      ||||||||||||| ||| |||| |||||||||||| |||||||||||| |
seq2  CCCCTCCCTCCCA-TGG-CCAGGCGCCGCCGCAGT-GAAAAGCCCTGA-G  46

seq1  CTCCCGCTGTCCCCATAGCGCGGACGGTCTCTGCTGCGGTCCCTGCCCAC  100
      |||||| ||||||||||||||||||||| | |||||||||||||||||||
seq2  CTCCCG-TGTCCCCATAGCGCGGACGGTTTTTGCTGCGGTCCCTGCCCAC  95

seq1  TGGCGCCACCGGTCCAGGTGCCGCCTCGCCCGGAAGAAATCTCCCCATC-  149
       ||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AGGCGCCACCGGTCCAGGTGCCGCCTCGCCCGAAAGAAATCTCCCCATCG  145

seq1  GGCGGTGACCGGCGCTGGGGCGCTAA-GGGAGGCTGCGAA-GGGACATTG  197
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  GGCGGTGACCGGCGCTGGGGCGCTAAGGGGAGGCTGCGAAGGGGACATTG  195

seq1  AAGCCACCGAGCCACTCACTGGTGC-TTCTCACCCAAACTTCCCAGGAGC  246
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGCC-CCGAGCCACTCACTGGTGCTTTCTCACCCAAACTTCCCAGGAGC  244

seq1  GGCCGGAGGACCGTCCACGGCGGCGCTGCGCCAGCACCCCGTCTCCACCC  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAAGGACCGTCCACGGCGGCGCTGCGCCAGCACCCCGTCTCCACCC  294

seq1  ACTCGGGGTCTTCTCCGTGGGTGGGCTTCGGTGCTGCCACGTGACTTCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGGTCTTCTCCGTGGGTGGGCTTCGGTGCTGCCACGTGACTTCCA  344

seq1  CGAAGAGCGGGGGCCCTTAGCGGAAAGCAGCGACTTGGGTGGGATCCTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGCGGGGGCCCTTAGCGGAAAGCAGCGACTTGGGTGGGATCCTGG  394

seq1  ACCCCGAGGTGCGGCGAGAGGGTGGGGGGAGGAGGAAGCAGGGGCGGGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGAGGTGCGGCGAGAGGGTGGGGGGAGGAGGAAGCAGGGGCGGGGT  444

seq1  GGGAGTAGGGGGCGGGGCCGGGCCGGGCCGGGACTGGACACGGGGTGGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGGGGGCGGGGCCGGGCCGGGCCGGGACTGGACACGGGGTGGGG  494

seq1  AGGCGGGCACCGTGGAGCCCGGAGAGCGGGAAGCGGCGGGGCGGGGCGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGCACCGTGGAGCCCGGAGAGCGGGAAGCGGCGGGGCGGGGCGGG  544

seq1  GCAGCAAGTGCGGGGATGCGGGCGGAGCGCGGGTAGCAGAGCCCCACGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGTGCGGGGATGCGGGCGGAGCGCGGGTAGCAGAGCCCCACGTT  594

seq1  CAGGGCGCCCCGTGTGGCGAGCGCGCGGCATGTCGCAAGGGCCCCCCGCG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGCCCCGTGTGGCGAGCGCGCGGCATGTCGCAAGGGCCCCCCGCG  644

seq1  GTCAGCGTGCTGCAGAGAAGCGTGGATGCGCCCGGGAACCAGCCGCAGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCGTGCTGCAGAGAAGCGTGGATGCGCCCGGGAACCAGCCGCAGGT  694

seq1  ATTGGACAAGGGGGCCGGGTGTGAGGACCGGGTGAGGGTGAGGGCAGAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAAGGGGGCCGGGTGTGAGGACCGGGTGAGGGTGAGGGCAGAGC  744

seq1  TCCAGGTGCGCCCCCGCCGTGCGCCCCCGCCGTGCGCCTCAAGCGCTTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGCGCCCCCGCCGTGCGCCCCCGCCGTGCGCCTCAAGCGCTTGG  794

seq1  GAAGGCGGCAGCCCCTCCAGACTCGGCGCCGAACACGTGGGTCCGCGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCGGCAGCCCCTCCAGACTCGGCGCCGAACACGTGGGTCCGCGCTG  844

seq1  CTGTGGGCAGTTTCATCCTTGACTCCTGTGGGCGCTGGTGGGAGGGGGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCAGTTTCATCCTTGACTCCTGTGGGCGCTGGTGGGAGGGGGCC  894

seq1  CGGAGCTCCGATATTATGAATTC  919
      |||||||||||||||||||||||
seq2  CGGAGCTCCGATATTATGAATTC  917