BAC Information

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BAC

Clone NameB6Ng01-008L13
Chromosome1 (Build37)
Map Location 148,352,681 - 148,427,220
singlet/doubletdoublet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008L13.bB6Ng01-008L13.g
ACCDH844881DH844882
length1,0691,101
definitionDH844881|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L13, 5' end.DH844882|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,352,681 - 148,353,758)(148,426,100 - 148,427,220)
sequence
gaattccagattccttaaatcaagaacattttaatttaatactatttaat
tattagctcatttagttttcataattaaagtaaataaaatctcagattga
caccacaaggactttcttcacaaattttgtgttttattatagttaagtgt
ttgtgtgtcaaattctataaggtctgtgtccctgtgggacttggttgttg
aaactaaaggtatactagaaaaaaagaaatagtcacacatccctgtttca
tgctgtgtaaaatatcgtggaattaccctgtggatggagtggcatctata
aataggaagaagacataattgggagctaccaaaaaattgtgaatccttca
tacttaattttcttatatttggataatgattatctgaaattcttctctga
aaaaattatctttaattttaaggaattcctctatggtctgaataatcaat
cataagctatttaacatttttaaaagctgggtcttccttgaaagttaact
aaatttaatttaatttttatgcatatagccagagaacacattattattta
cattttttaataaaataacgtctaattatgctgtgacctttctttgcaaa
ttgggtaaactctgaggtatttttggtccttcacaatacaaattttgtct
gttcagtgacccaattctagagttttctggctggattttagtgtacttac
ttaagactatttctagtatgattttagttagaagaagtatcatttctttt
gctgaacaaatttctagtggtcattttgcaaattgtttgatagtaacact
attttaaagcatctcaacatctttactaaaagaaaactgaggatgatatt
catgaaagtaagagaataatgatcactattttcgagttttattttataaa
gtatgagttataagatgtaagactttccaaaaaggcatgaatggtaaagc
cactttggatcttagtgtctgcaactgttatttccactctgtttgtaacc
atatattgttacgttatctaaatgtcttctgtttcactgtctgaaacgag
aaatatatagtgtaaatat
gaattccatgcctgtttctgccttcttgcaaggcttcttatatcagttta
ttcatcaaaaaaaaaaaaaaaagtgggagaggaggcattgctgatttgtt
tgtgaacaccacgaaacaccagcctttgtttttggtacccatagccaact
gcattaagttaaaatagaacacaatattacttaagtactctaaagtgtga
aattaaaagcctccttagagattagcttcaaacagatttattccctgata
attaatactcccattaaaatgtgctttatattaaattgtttggtctgtgt
ataacatctcgtaacacaaatatgaaattaagatagcaaaataataatga
ataatgccaacttggatggccattgcagtaatgagaatatatgatgagag
cctcttctatagagttttcaataaacaggtcaagagaatttatcatcttt
taatctcaacatttctctgtgttaggacttttgttattctatgcttactc
ataaaaataaaagatgcattctggacaaaagaggtaaagaataaagcttt
actctgcttaaactaagtgtggctcgagtcctgtaagcagcatgcttctt
acagctagtgtggcttacaatgcagtataaaggggatagtgtcaaattaa
aaaacatgaaaggttaatttagatccttcttaataaatcttttattgaaa
agacactatcgtcaataacgatttaaattatgtattcttccattcttcat
attatttttcaataaacattagaatgaaaatttcaaaatagccctttctt
acagagcactcaagtttcaagatttaatgtaaaactcatgctattataga
gtaaatataatctcgattttcactggggaaaaggagggcataaaatatac
ataaagcactggaaatttaattaaatttcatatatatatgttgatattga
tatttcatttacatttaaatattatcctctttctgtttttccttctgaag
tccctatcccctcctcatgccctgatcacaccaccactctgctctggccc
tgcattcccttaccctgcgcagagctattacatcgtatgtaaataatagt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148352681_148353758
seq2: B6Ng01-008L13.b_43_1111

seq1  GAATTCCAGATTCCTTAAATCAAGAACATTTTAATTTAATACTATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTCCTTAAATCAAGAACATTTTAATTTAATACTATTTAAT  50

seq1  TATTAGCTCATTTAGTTTTCATAATTAAAGTAAATAAAATCTCAGATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTCATTTAGTTTTCATAATTAAAGTAAATAAAATCTCAGATTGA  100

seq1  CACCACAAGGACTTTCTTCACAAATTTTGTGTTTTATTATAGTTAAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAAGGACTTTCTTCACAAATTTTGTGTTTTATTATAGTTAAGTGT  150

seq1  TTGTGTGTCAAATTCTATAAGGTCTGTGTCCCTGTGGGACTTGGTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTCAAATTCTATAAGGTCTGTGTCCCTGTGGGACTTGGTTGTTG  200

seq1  AAACTAAAGGTATACTAGAAAAAAAGAAATAGTCACACATCCCTGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAGGTATACTAGAAAAAAAGAAATAGTCACACATCCCTGTTTCA  250

seq1  TGCTGTGTAAAATATCGTGGAATTACCCTGTGGATGGAGTGGCATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTAAAATATCGTGGAATTACCCTGTGGATGGAGTGGCATCTATA  300

seq1  AATAGGAAGAAGACATAATTGGGAGCTACCAAAAAATTGTGAATCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAGAAGACATAATTGGGAGCTACCAAAAAATTGTGAATCCTTCA  350

seq1  TACTTAATTTTCTTATATTTGGATAATGATTATCTGAAATTCTTCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATTTTCTTATATTTGGATAATGATTATCTGAAATTCTTCTCTGA  400

seq1  AAAAATTATCTTTAATTTTAAGGAATTCCTCTATGGTCTGAATAATCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATCTTTAATTTTAAGGAATTCCTCTATGGTCTGAATAATCAAT  450

seq1  CATAAGCTATTTAACATTTTTAAAAGCTGGGTCTTCCTTGAAAGTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTATTTAACATTTTTAAAAGCTGGGTCTTCCTTGAAAGTTAACT  500

seq1  AAATTTAATTTAATTTTTATGCATATAGCCAGAGAACACATTATTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTTAATTTTTATGCATATAGCCAGAGAACACATTATTATTTA  550

seq1  CATTTTTTAATAAAATAACGTCTAATTATGCTGTGACCTTTCTTTGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAATAAAATAACGTCTAATTATGCTGTGACCTTTCTTTGCAAA  600

seq1  TTGGGTAAACTCTGAGGTATTTTTGGTCCTTCACAATACAAATTTTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAACTCTGAGGTATTTTTGGTCCTTCACAATACAAATTTTGTCT  650

seq1  GTTCAGTGACCCAATTCTAGAGTTTTCTGGCTGGATTTTAGTGTACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGACCCAATTCTAGAGTTTTCTGGCTGGATTTTAGTGTACTTAC  700

seq1  TTAAGACTATTTCTAGTATGATTTTAGTTAGAAGAAGTATCATTTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTATTTCTAGTATGATTTTAGTTAGAAGAAGTATCATTTCTTTT  750

seq1  GCTGAACAAATTTCTAGTGGTCATTTTGCAAATTGTTTGATAGTAACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACAAATTTCTAGTGGTCATTTTGCAAATTGTTTGATAGTAACACT  800

seq1  ATTTTAAAGCATCTCAACATCTTTACTAAAAGAAAACTGAGGATGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCATCTCAACATCTTTACTAAAAGAAAACTGAGGATGATATT  850

seq1  CATGAAAGTAAGAGAATAATGATCACTATTTTCGAGTTTTATTTTATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTAAGAGAATAATGATCACTATTTTCGAGTTTTATTTTATAAA  900

seq1  GTATGAGTTATAAGATGTAAGACTTTCCAAAAAGGCATGAATGGTAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGTTATAAGATGTAAGACTTTCCAAAAAGGCATGAATGGTAAAGC  950

seq1  CACTTTGGATCTTAGTGTCTGCAACTGTTATTTCCACTCTGTTTGTACAC  1000
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  CACTTTGGATCTTAGTGTCTGCAACTGTTATTTCCACTCTGTTTGTAACC  1000

seq1  ATATATTTGTTTAACCTTTATCTTAAATTGTCTTCTGTTTCACTGTTCTG  1050
      ||||| |||||    | ||||||  || ||||||||||||||||| ||||
seq2  ATATA-TTGTT---ACGTTATCT--AAATGTCTTCTGTTTCACTG-TCTG  1043

seq1  AGACGAGAATATATTAAGTGTAATATAT  1078
      | ||||||| ||||  ||||||| ||||
seq2  AAACGAGAA-ATATATAGTGTAA-ATAT  1069

seq1: chr1_148426100_148427220
seq2: B6Ng01-008L13.g_69_1169 (reverse)

seq1  TACTAATTATTTTACATACGATGTAAATAAGGCTCTTGCGCCAGTGTAGG  50
      |||| |||| |||||||||||||| ||||  |||| |||| ||| ||| |
seq2  TACT-ATTA-TTTACATACGATGT-AATA--GCTC-TGCG-CAGGGTAAG  43

seq1  GGAATGCCAGGGCCAGGAAGCAAGAGTGGGTGGGTTGGTGATCAGGGGCA  100
      |||||| |||||||||  ||| ||||| |||||    ||||||| |||||
seq2  GGAATG-CAGGGCCAG--AGC-AGAGT-GGTGG---TGTGATCA-GGGCA  84

seq1  TGAGGGAGGGGATAGGGACTTTTCAGAGGGAAAAACAGAAAGAGGATAAT  150
      ||| |||||||||||||||  |||||| ||||||||||||||||||||||
seq2  TGA-GGAGGGGATAGGGAC--TTCAGAAGGAAAAACAGAAAGAGGATAAT  131

seq1  ATTTTAAATGTAAATGAAATATCAATATCAACATATATATATGAAATTTA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTAAATGTAAATGAAATATCAATATCAACATATATATATGAAATTTA  180

seq1  ATTAAATTTTCCAGTGCTTTATGTATATTTTATGCCCTCCTTTT-CCCAG  249
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTAAA-TTTCCAGTGCTTTATGTATATTTTATGCCCTCCTTTTCCCCAG  229

seq1  TGAAAATCGAGATTATATTTACTCTATAATAGCATGAGTTTTACATTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCGAGATTATATTTACTCTATAATAGCATGAGTTTTACATTAAA  279

seq1  TCTTGAAACTTGAGTGCTCTGTAAGAAAGGGCTATTTTGAAATTTTCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAACTTGAGTGCTCTGTAAGAAAGGGCTATTTTGAAATTTTCATT  329

seq1  CTAATGTTTATTGAAAAATAATATGAAGAATGGAAGAATACATAATTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTTATTGAAAAATAATATGAAGAATGGAAGAATACATAATTTAA  379

seq1  ATCGTTATTGACGATAGTGTCTTTTCAATAAAAGATTTATTAAGAAGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTATTGACGATAGTGTCTTTTCAATAAAAGATTTATTAAGAAGGAT  429

seq1  CTAAATTAACCTTTCATGTTTTTTAATTTGACACTATCCCCTTTATACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAACCTTTCATGTTTTTTAATTTGACACTATCCCCTTTATACTG  479

seq1  CATTGTAAGCCACACTAGCTGTAAGAAGCATGCTGCTTACAGGACTCGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAAGCCACACTAGCTGTAAGAAGCATGCTGCTTACAGGACTCGAG  529

seq1  CCACACTTAGTTTAAGCAGAGTAAAGCTTTATTCTTTACCTCTTTTGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTAGTTTAAGCAGAGTAAAGCTTTATTCTTTACCTCTTTTGTCC  579

seq1  AGAATGCATCTTTTATTTTTATGAGTAAGCATAGAATAACAAAAGTCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCATCTTTTATTTTTATGAGTAAGCATAGAATAACAAAAGTCCTA  629

seq1  ACACAGAGAAATGTTGAGATTAAAAGATGATAAATTCTCTTGACCTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAATGTTGAGATTAAAAGATGATAAATTCTCTTGACCTGTTT  679

seq1  ATTGAAAACTCTATAGAAGAGGCTCTCATCATATATTCTCATTACTGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACTCTATAGAAGAGGCTCTCATCATATATTCTCATTACTGCAA  729

seq1  TGGCCATCCAAGTTGGCATTATTCATTATTATTTTGCTATCTTAATTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCCAAGTTGGCATTATTCATTATTATTTTGCTATCTTAATTTCA  779

seq1  TATTTGTGTTACGAGATGTTATACACAGACCAAACAATTTAATATAAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTTACGAGATGTTATACACAGACCAAACAATTTAATATAAAGC  829

seq1  ACATTTTAATGGGAGTATTAATTATCAGGGAATAAATCTGTTTGAAGCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATGGGAGTATTAATTATCAGGGAATAAATCTGTTTGAAGCTA  879

seq1  ATCTCTAAGGAGGCTTTTAATTTCACACTTTAGAGTACTTAAGTAATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAGGAGGCTTTTAATTTCACACTTTAGAGTACTTAAGTAATATT  929

seq1  GTGTTCTATTTTAACTTAATGCAGTTGGCTATGGGTACCAAAAACAAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTATTTTAACTTAATGCAGTTGGCTATGGGTACCAAAAACAAAGG  979

seq1  CTGGTGTTTCGTGGTGTTCACAAACAAATCAGCAATGCCTCCTCTCCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTTCGTGGTGTTCACAAACAAATCAGCAATGCCTCCTCTCCCAC  1029

seq1  TTTTTTTTTTTTTTTTGATGAATAAACTGATATAAGAAGCCTTGCAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGATGAATAAACTGATATAAGAAGCCTTGCAAGAA  1079

seq1  GGCAGAAACAGGCATGGAATTC  1121
      ||||||||||||||||||||||
seq2  GGCAGAAACAGGCATGGAATTC  1101