BAC Information

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BAC

Clone NameB6Ng01-009B11
Chromosome1 (Build37)
Map Location 154,870,189 - 155,050,451
singlet/doubletdoublet
Overlap geneNmnat2, Lamc2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097
Downstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009B11.bB6Ng01-009B11.g
ACCDH845130DH845131
length469310
definitionDH845130|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B11, 5' end.DH845131|Mus musculus domesticus DNA, BAC clone: B6Ng01-009B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,049,977 - 155,050,451)(154,870,189 - 154,870,498)
sequence
tggggacttttcagagggtatttaaattttaggaccccctgagagactag
gtgggctgttggttggttgctgttggtcttgctgtgcaaacaaacagaag
attagataccctgaaggtcaaacttgcctcaaggaactcgacacccctag
tcagaatgaagtactctcacaatagtcttgtccctttcccctctttcctt
ctttctctcttatctggtgttatgggattgaaggagtgggaaaagggtgg
agaagtgtggaagaaagaagacccacaaagtagcaaggacaaactacagt
taggtgttatggggacacaaggaaggcatcccatctgtttgtgaaagtga
agagccacgctttagaaaaacttttcatgggggttcagcttacctgaaat
tttttttgatgcccatgtctttctccttgaaccttctgttgactcaaggt
agatgctgctcattgcact
ttacttatgacacctgcgatctctagggtcatttccatctttcatctgaa
ttctgagacattcccattttgatagttcttggcatacatttcattcggag
gctgggagacctatctgacatccataatgagaacctctcatttggctagg
gatgaagactggattcagtcccagaaaacacacatcaagcaagcacggag
acccgtgcatgcagacctggtactaggggtgtggatccaaagctgaagct
cattctcagggccagcctgggctacataagactttcagagagggaggggt
ggggggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155049977_155050451
seq2: B6Ng01-009B11.b_47_521 (reverse)

seq1  AGTGCAGTGAGCAGCATCTACCTTGAGTCAACAGAAGGTTCAAGGAGAAA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATGAGCAGCATCTACCTTGAGTCAACAGAAGGTTCAAGGAGAAA  50

seq1  GACATGGGCATCAAGTGAGGTTTCAGGTAAGCTGAACCCCCATGAATAGT  100
      ||||||||||||||   |  |||||||||||||||||||||||||| |||
seq2  GACATGGGCATCAAAAAAAATTTCAGGTAAGCTGAACCCCCATGAAAAGT  100

seq1  TTTTCTAAAGCGTGGCTCTTCACTTTCACAAACAGATGGGATGCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAGCGTGGCTCTTCACTTTCACAAACAGATGGGATGCCTTCCT  150

seq1  TGTGTCCCCATAACACCTAACTGTAGTTTGTCCTTGCTACTTTGTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCCATAACACCTAACTGTAGTTTGTCCTTGCTACTTTGTGGGTC  200

seq1  TTCTTTCTTCCACACTTCTCCACCCTTTTCCCACTCCTTCAATCCCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTCCACACTTCTCCACCCTTTTCCCACTCCTTCAATCCCATAA  250

seq1  CACCAGATAAGAGAGAAAGAAGGAAAGAGGGGAAAGGGACAAGACTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATAAGAGAGAAAGAAGGAAAGAGGGGAAAGGGACAAGACTATTG  300

seq1  TGAGAGTACTTCATTCTGACTAGGGGTGTCGAGTTCCTTGAGGCAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTACTTCATTCTGACTAGGGGTGTCGAGTTCCTTGAGGCAAGTTT  350

seq1  GACCTTCAGGGTATCTAATCTTCTGTTTGTTTGCACAGCAAGACCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAGGGTATCTAATCTTCTGTTTGTTTGCACAGCAAGACCAACAG  400

seq1  CAACCAACCAACAGCCCACCTAGTCTCTCAGGGGGTCCTAAAATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAACCAACCAACAGCCCACCTAGTCTCTCAGGGGGTCCTAAAATTTAAAT  450

seq1  ACCCTCTGAAAAGTCCCCAGAATTC  475
      |||||||||||||||||||||||||
seq2  ACCCTCTGAAAAGTCCCCAGAATTC  475

seq1: chr1_154870189_154870498
seq2: B6Ng01-009B11.g_77_386

seq1  TTACTTATGACACCTGCGATCTCTAGGGTCATTTCCATCTTTCATCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATGACACCTGCGATCTCTAGGGTCATTTCCATCTTTCATCTGAA  50

seq1  TTCTGAGACATTCCCATTTTGATAGTTCTTGGCATACATTTCATTCGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACATTCCCATTTTGATAGTTCTTGGCATACATTTCATTCGGAG  100

seq1  GCTGGGAGACCTATCTGACATCCATAATGAGAACCTCTCATTTGGCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGACCTATCTGACATCCATAATGAGAACCTCTCATTTGGCTAGG  150

seq1  GATGAAGACTGGATTCAGTCCCAGAAAACACACATCAAGCAAGCACGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGACTGGATTCAGTCCCAGAAAACACACATCAAGCAAGCACGGAG  200

seq1  ACCCGTGCATGCAGACCTGGTACTAGGGGTGTGGATCCAAAGCTGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTGCATGCAGACCTGGTACTAGGGGTGTGGATCCAAAGCTGAAGCT  250

seq1  CATTCTCAGGGCCAGCCTGGGCTACATAAGACTTTCAGAGAGGGAGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAGGGCCAGCCTGGGCTACATAAGACTTTCAGAGAGGGAGGGGT  300

seq1  GGGGGGAGAG  310
      ||||||||||
seq2  GGGGGGAGAG  310