BAC Information

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BAC

Clone NameB6Ng01-009C13
Chromosome1 (Build37)5 (Build37)
Map Location 61,720,239 - 61,720,7868,811,099 - 8,811,258
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009C13.bB6Ng01-009C13.g
ACCDH845178DH845179
length1,011740
definitionDH845178|Mus musculus domesticus DNA, BAC clone: B6Ng01-009C13, 5' end.DH845179|Mus musculus domesticus DNA, BAC clone: B6Ng01-009C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,239 - 61,720,786)(8,811,099 - 8,811,258)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaatcaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctctgggtgaatttgcttcttttttttctagggc
tttagatgtgttgtcaagctgctagtatgtgctgtctccggtatcttctt
ggaggcactcagcgctatgagtttccctctagaaatgcttaattggtgtc
ccatagggttg
gaattctgttagaaagtgttctatggtatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatattgcatcagttttc
ataagagaaattggtctaaaattctttcttgttgaatgtctgtattgttg
tttaggtatcagggtgactgtaacttcataaaatgagtttggcgatattc
ctatttctcttttgtggaatagtttgaggagtattggtattagtatcagc
ttttctttgatggtctggtagaatttagcatgaagaccacctggtcctct
ggttttggggggctttgtttgtttgttttgttttgtggaagacttaatga
ctgcttctatttccataggggttataggagtatctaggtaatttacctag
tcttgatttaagttagtaactggtactctgcctagaaaatcatccatttc
atttatattttctaatttggttgagtataggcttttgaagaaagagccag
tgattctttgtatttattcagtgtctgttattacacctcatttttaaagt
cctgattttgttaaatttgatactgtcttgctgccttttagtttcgctaa
gggattttctctatcctgttgattttctaaaagaaccagttcctgctttc
tttggttctttgcaattgttctctttgtccctaatatatatatatatata
tatatatatatatatatatatatatatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720239_61720786
seq2: B6Ng01-009C13.b_514_1058 (reverse)

seq1  CAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCG  50
      ||| |||||||||||| |   |||||||||| ||||||||||||||||||
seq2  CAACCCTATGGGACACCAATTAAGCATTTCT-AGAGGGAAACTCATAGCG  49

seq1  CTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGAC  100
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CTGAGTGCCTCCAAGAAGATACCGGAGACAGCACATACTAGCAGCTTGAC  99

seq1  AACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGA  150
      ||||||||| ||||||||||||||||| ||||||||||||||| ||||||
seq2  AACACATCT-AAAGCCCTAGAAAAAAAAGAAGCAAATTCACCC-AGAGGA  147

seq1  GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAA  197

seq1  ACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGATTCTTTGA  247

seq1  GAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACA  297

seq1  GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACA  347

seq1  ACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCT  397

seq1  ATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACA  447

seq1  GATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGT  497

seq1  CCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC  545

seq1: chr5_8811099_8811258
seq2: B6Ng01-009C13.g_738_808 (reverse)

seq1  TATATATATATATATATATATATATATATATATATATATATATATATACA  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATATATATATATATATATATATATATATATATATATATATATATATATA  50

seq1  GCCTGATGGGGCCCATTGCTGAGTTCTCATGATGCTCATGATGTAGTAAG  100
           ||  ||  ||  |  ||                            
seq2  TATATATTAGGGACAAAG-AGA----------------------------  71

seq1  ATTAGAGCTACAACAGCATGTCTTACCTGATTGCCAGTATATATATATTA  150
                                                        
seq2  --------------------------------------------------  71

seq1  GAGAAAGAGA  160
                
seq2  ----------  71