BAC Information

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BAC

Clone NameB6Ng01-009C18
Chromosome1 (Build37)
Map Location 92,135,771 - 92,271,158
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383542, EG665688, Centg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009C18.bB6Ng01-009C18.g
ACCDH845186DH845187
length1,2071,083
definitionDH845186|Mus musculus domesticus DNA, BAC clone: B6Ng01-009C18, 5' end.DH845187|Mus musculus domesticus DNA, BAC clone: B6Ng01-009C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,135,771 - 92,136,981)(92,270,066 - 92,271,158)
sequence
gaattcttgctgatgctttgctgacttagattttcttcacctgacttccc
tgtggacagatgttaaggctgggagaacctaaggctggccctgggggtgg
gaggtctggctgttaagtcctctctcttcactctaggactctccttaccc
tctccacactctatctagagcagataccactgtttggtgacagcctctgg
tccctggctagcttctcatccatcccttcacgctaggctccaaggctgag
tcaaccctaccatttgccgcactgattctttttcctcttcgaagtctctc
caacgttggcatttgccaaggccagcaaatgagcaatgccctgccaaggg
ccagtttcccacagcggcaaaataatcatatctgacacatagacattttt
ttctaaaggaagacaaaaagaccagcttagagagagagattattatttca
aaaacactatccttttgtttcacttcagaagttctatcttttcacagagc
cagtgtgtccagaagtgcatcattgggtcaggactcctcagcatggagtc
cttgggagagtcctcaacccacaggccacagaggccagcattaagcctcc
agcgaatgaccctgaatggtttgggcctttcctcccctgctccagtcact
gctacgtagtgcagcatctcagctgtagccccaatagtcactctacgaaa
cgaccaaaatgggaggatctgctggtgtttgtcacactgccatggggagg
ttctcaaaatctccccaggtaatgaggtaggctgtgcattcttcccgtcg
ctctgctttagcagacacttcttcatatgccgctccttcctcggggcccg
ggaactatgtgattcataagcctcgacctttctcagcttccaggcagctt
ggagctgaggtctcagcatccagtgaacagtttatcattgcctcaatttc
tggtgaaaatgttcccccttcctcacctatccttcatttgtcttttgttc
tgacttaaggcattcgatgaaatgcactattctttttcaaacctcacaga
atgtgccactctcttttcctactagctgtgagggcttcactggtacctgt
ggcttggacagcaagggcagtcgtgacctcgaaacaaaatgaatacttga
gagcagtagtgactcctgccttatcttacccaccgcgttgcctgtgttct
cttccaa
gaattcctgtgatccaaggctacaattactcgtgtggattaagaacactg
cgatgcgcagatggtccctgtgacccaggatctgctggaaaccaagcaga
gcaagcaccggaaatgtagcacacaggcctggtgtcttccctggtcctat
ctgctgcctatgggtagggctttccagagcccctgacttcagaggtactg
atgccagtccttttggccattctccatccagagccacagctgaagcacca
cttccagttctgttactccctccactccacccgccatgtactttcagtga
tgggggcctctgcctgctctggccgagtcctcttatgcccatggtgagtg
cagctcccaaccacggaaatatttcaatctgtaacgggcttgtccttcct
gttcacaatgtccaatgtgcacaaaaccaagggtgagtttgagtagtttg
aggttctttaccgccctccatggcagggctataggcatccacaatggcta
tcctcagtggagagcatctatgtccacgacagtgtcttcctgtggggctg
ctgagtgcctaagaaaacggaagatatgtttatgattgactctattccat
cagagacaggagccggagggattgtcccttatactctcagatctgtttcc
tattttaatggtactgttttctagtatgtatagtcccaccagttgctatg
agaaaggatggctatacatacacgctgatagcctaattctagaagttgtt
aattctaagcccagtgggtcagccagaccatgcttccacccaagtccaga
tgaaggacccttccatttccccttgtagcccctgcatactctgggcatag
ggcagcatagctctgggtctttccatgggattctttcccttagtgtcctg
cccagagctcactctctgaggaactacctgactccaacttctccttttac
aaggaccagacatattgcatagggtctggcagactgacttcattttgatc
tggtatatctgcagggtcacatgtgagtactagggcgatcaaccttcacc
cagtgttttggggggataacgccacccactaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92135771_92136981
seq2: B6Ng01-009C18.b_45_1251

seq1  GAATTCTTGCTGATGCTTTGCTGACTTAGATTTTCTTCACCTGACTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGATGCTTTGCTGACTTAGATTTTCTTCACCTGACTTCCC  50

seq1  TGTGGACAGATGTTAAGGCTGGGAGAACCTAAGGCTGGCCCTGGGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACAGATGTTAAGGCTGGGAGAACCTAAGGCTGGCCCTGGGGGTGG  100

seq1  GAGGTCTGGCTGTTAAGTCCTCTCTCTTCACTCTAGGACTCTCCTTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGGCTGTTAAGTCCTCTCTCTTCACTCTAGGACTCTCCTTACCC  150

seq1  TCTCCACACTCTATCTAGAGCAGATACCACTGTTTGGTGACAGCCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACACTCTATCTAGAGCAGATACCACTGTTTGGTGACAGCCTCTGG  200

seq1  TCCCTGGCTAGCTTCTCATCCATCCCTTCACGCTAGGCTCCAAGGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTAGCTTCTCATCCATCCCTTCACGCTAGGCTCCAAGGCTGAG  250

seq1  TCAACCCTACCATTTGCCGCACTGATTCTTTTTCCTCTTCGAAGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTACCATTTGCCGCACTGATTCTTTTTCCTCTTCGAAGTCTCTC  300

seq1  CAACGTTGGCATTTGCCAAGGCCAGCAAATGAGCAATGCCCTGCCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTGGCATTTGCCAAGGCCAGCAAATGAGCAATGCCCTGCCAAGGG  350

seq1  CCAGTTTCCCACAGCGGCAAAATAATCATATCTGACACATAGACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCCCACAGCGGCAAAATAATCATATCTGACACATAGACATTTTT  400

seq1  TTCTAAAGGAAGACAAAAAGACCAGCTTAGAGAGAGAGATTATTATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGAAGACAAAAAGACCAGCTTAGAGAGAGAGATTATTATTTCA  450

seq1  AAAACACTATCCTTTTGTTTCACTTCAGAAGTTCTATCTTTTCACAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTATCCTTTTGTTTCACTTCAGAAGTTCTATCTTTTCACAGAGC  500

seq1  CAGTGTGTCCAGAAGTGCATCATTGGGTCAGGACTCCTCAGCATGGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTCCAGAAGTGCATCATTGGGTCAGGACTCCTCAGCATGGAGTC  550

seq1  CTTGGGAGAGTCCTCAACCCACAGGCCACAGAGGCCAGCATTAAGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGAGTCCTCAACCCACAGGCCACAGAGGCCAGCATTAAGCCTCC  600

seq1  AGCGAATGACCCTGAATGGTTTGGGCCTTTCCTCCCCTGCTCCAGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAATGACCCTGAATGGTTTGGGCCTTTCCTCCCCTGCTCCAGTCACT  650

seq1  GCTACGTAGTGCAGCATCTCAGCTGTAGCCCCAATAGTCACTCTACGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTAGTGCAGCATCTCAGCTGTAGCCCCAATAGTCACTCTACGAAA  700

seq1  CGACCAAAATGGGAGGATCTGCTGGTGTTTGTCACACTGCCAT-GGGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGACCAAAATGGGAGGATCTGCTGGTGTTTGTCACACTGCCATGGGGAGG  750

seq1  TTCTCAAAATC-CCCCAGGTAATGAGGTAGGCTGTGCATTCTTCCCGTCG  798
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAATCTCCCCAGGTAATGAGGTAGGCTGTGCATTCTTCCCGTCG  800

seq1  CTCTGCTTTAGCAGACACTTCTCCATATGCCGC-CCTTCCTCGGGGCCCG  847
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  CTCTGCTTTAGCAGACACTTCTTCATATGCCGCTCCTTCCTCGGGGCCCG  850

seq1  GGAACTATGTGATTCATAAGCCTCGACCTTTCTCAGCTTCCAGGCAGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTATGTGATTCATAAGCCTCGACCTTTCTCAGCTTCCAGGCAGCTT  900

seq1  GGAGCTGAGGTCTCAGCATCCAGTGAAACAGTTTATCATTGCCTCAATTT  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGCTGAGGTCTCAGCATCCAGTG-AACAGTTTATCATTGCCTCAATTT  949

seq1  CCTGGTGAAAATGTTCCCCCTTCCTCCACCTTATCCTTCAATTTTGTCTT  997
       |||||||||||||||||||||||| |||| |||||||||  |||||| |
seq2  -CTGGTGAAAATGTTCCCCCTTCCT-CACC-TATCCTTCA--TTTGTC-T  993

seq1  TTTGTTCTTGACTTAGTGGCATTTCGATGAAATGCACTATTCTTTTTCAA  1047
      ||||||| |||||||  |||| |||||||||||||||||||||||||| |
seq2  TTTGTTC-TGACTTA-AGGCA-TTCGATGAAATGCACTATTCTTTTTC-A  1039

seq1  AACCTCACAGAATG-GCCACTCTC-TTCCCTACCAGCTGTGAGGGCTACC  1095
      |||||||||||||| ||||||||| || ||||| |||||||||||||  |
seq2  AACCTCACAGAATGTGCCACTCTCTTTTCCTACTAGCTGTGAGGGCT-TC  1088

seq1  ACTGGTACCTGT-GCTTGGACAGCACAGGGCAG-CTGGACTCCAGAACAA  1143
      |||||||||||| |||||||||||| ||||||| |  |||  |  |||||
seq2  ACTGGTACCTGTGGCTTGGACAGCA-AGGGCAGTCGTGACCTCGAAACAA  1137

seq1  GATG-ATACTTTGAAGCAAGATTTGACCTCAG-CTTACCTTA-CCACAGC  1190
       ||| ||||||   ||| ||   ||||  | | |||| |||| |||| ||
seq2  AATGAATACTTGAGAGC-AGTAGTGACTCCTGCCTTATCTTACCCACCGC  1186

seq1  TGCCCCTGTGTTCTCTTCCAA  1211
          |||||||||||||||||
seq2  GTTGCCTGTGTTCTCTTCCAA  1207

seq1: chr1_92270066_92271158
seq2: B6Ng01-009C18.g_68_1150 (reverse)

seq1  GTTAGTGGGTGGCTGATATCCCCCCAAAACATTGGTGGAAGTGTTGATCG  50
      ||||||||||||| | ||||||||||||||| |||  |||| ||||||||
seq2  GTTAGTGGGTGGC-GTTATCCCCCCAAAACACTGGGTGAAG-GTTGATCG  48

seq1  CCCCTAGTACTTCACAATGTGACCCCTGCAGATATAACCAGATCAAAATG  100
       ||||||||| |||| |||||| |||||||||||| ||||||||||||||
seq2  -CCCTAGTAC-TCAC-ATGTGA-CCCTGCAGATAT-ACCAGATCAAAATG  93

seq1  AAGTCAGTCTGGCAGACCCTTATGCAATATGTCTGGTCCTTGTGAAAGGG  150
      ||||||||||| ||||||| ||||||||||||||||||||||| ||||| 
seq2  AAGTCAGTCTGCCAGACCC-TATGCAATATGTCTGGTCCTTGTAAAAGGA  142

seq1  GAAGTTTGGAGTCAGGTAGTTCCTCAGAGAGTGGGCTCTGGGCAGGACAC  200
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAAG-TTGGAGTCAGGTAGTTCCTCAGAGAGTGAGCTCTGGGCAGGACAC  191

seq1  TAAGGGAAAGAATCCCATGGGAAGACCCAGAGCTATGCTGCCCTATGCCC  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAGGGAAAGAATCCCATGGAAAGACCCAGAGCTATGCTGCCCTATGCCC  241

seq1  AGGAGTATGCAGGGGCTACAAGGGGAAATGGAAGGGTCCTTCATCTGGAC  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GAGTATGCAGGGGCTACAAGGGGAAATGGAAGGGTCCTTCATCTGGAC  290

seq1  TTGGGTGGAAGCATGGTCTGGCTGACCCACTGGGCTTAGAATTAACAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGAAGCATGGTCTGGCTGACCCACTGGGCTTAGAATTAACAACT  340

seq1  TCTAGAATTAGGCTATCAGCGTGTATGTATAGCCATCCTTTCTCATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATTAGGCTATCAGCGTGTATGTATAGCCATCCTTTCTCATAGCA  390

seq1  ACTGGTGGGACTATACATACTAGAAAACAGTACCATTAAAATAGGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGGACTATACATACTAGAAAACAGTACCATTAAAATAGGAAACA  440

seq1  GATCTGAGAGTATAAGGGACAATCCCTCCGGCTCCTGTCTCTGATGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGAGTATAAGGGACAATCCCTCCGGCTCCTGTCTCTGATGGAAT  490

seq1  AGAGTCAATCATAAACATATCTTCCGTTTTCTTAGGCACTCAGCAGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAATCATAAACATATCTTCCGTTTTCTTAGGCACTCAGCAGCCCC  540

seq1  ACAGGAAGACACTGTCGTGGACATAGATGCTCTCCACTGAGGATAGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGACACTGTCGTGGACATAGATGCTCTCCACTGAGGATAGCCAT  590

seq1  TGTGGATGCCTATAGCCCTGCCATGGAGGGCGGTAAAGAACCTCAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGCCTATAGCCCTGCCATGGAGGGCGGTAAAGAACCTCAAACTA  640

seq1  CTCAAACTCACCCTTGGTTTTGTGCACATTGGACATTGTGAACAGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCACCCTTGGTTTTGTGCACATTGGACATTGTGAACAGGAAGG  690

seq1  ACAAGCCCGTTACAGATTGAAATATTTCCGTGGTTGGGAGCTGCACTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCGTTACAGATTGAAATATTTCCGTGGTTGGGAGCTGCACTCAC  740

seq1  CATGGGCATAAGAGGACTCGGCCAGAGCAGGCAGAGGCCCCCATCACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATAAGAGGACTCGGCCAGAGCAGGCAGAGGCCCCCATCACTGA  790

seq1  AAGTACATGGCGGGTGGAGTGGAGGGAGTAACAGAACTGGAAGTGGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGGCGGGTGGAGTGGAGGGAGTAACAGAACTGGAAGTGGTGCT  840

seq1  TCAGCTGTGGCTCTGGATGGAGAATGGCCAAAAGGACTGGCATCAGTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGGCTCTGGATGGAGAATGGCCAAAAGGACTGGCATCAGTACC  890

seq1  TCTGAAGTCAGGGGCTCTGGAAAGCCCTACCCATAGGCAGCAGATAGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCAGGGGCTCTGGAAAGCCCTACCCATAGGCAGCAGATAGGAC  940

seq1  CAGGGAAGACACCAGGCCTGTGTGCTACATTTCCGGTGCTTGCTCTGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGACACCAGGCCTGTGTGCTACATTTCCGGTGCTTGCTCTGCTT  990

seq1  GGTTTCCAGCAGATCCTGGGTCACAGGGACCATCTGCGCATCGCAGTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCAGCAGATCCTGGGTCACAGGGACCATCTGCGCATCGCAGTGTT  1040

seq1  CTTAATCCACACGAGTAATTGTAGCCTTGGATCACAGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCACACGAGTAATTGTAGCCTTGGATCACAGGAATTC  1083