BAC Information

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BAC

Clone NameB6Ng01-009D19
Chromosome1 (Build37)
Map Location 193,426,435 - 193,578,052
singlet/doubletdoublet
Overlap geneInts7, Lpgat1
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl
Downstream geneNek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009D19.bB6Ng01-009D19.g
ACCDH845233DH845234
length1,0811,189
definitionDH845233|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D19, 5' end.DH845234|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,426,435 - 193,427,522)(193,576,838 - 193,578,052)
sequence
gaattccctgccacatgtcttgataggaactagaaagcatgatgtctctg
ttgccctcttgatattctacgtctctcttgctgtgagtgtccatacgtgg
accggactaatggttgccatgacagaatgaattgggagccacaaatgtgg
agaagtgggagatgatgcactgtggcaatagaacagtgactgtgagacat
tcagtctcaggaaagcactgccatggaggctgtgtcacagctggtcactg
tggtgtgtgtgcactgtgacctagaaccagtaatgaggccacagtgtgtt
tagtagatgggtttgggggctttgatcttagctgttctgtggcctctcct
tccatatttagtgttgtagactttctagtaatcctgtgagccacttacta
ttttatataatgaggtgtgcaacattttgtgtcttaaaacttactgtttt
ctttgctctcgctcatcattcagcagtttgaattgcattctgatgatagt
tctggtgtccccagaggttgctcatgactgtagttctctggagccttggc
cgaaactggatagtcaaaggtcacccttttcatagtgtagaacagtgtgg
ttctcaacctctggatcataacctatttagggggtcacatatgagaactt
acactacaattcatagcagtaacaaagttacagttctgaagtagcaacaa
aataatagtgtggttggggtcacctaagatatatatacacacatacatac
atacatacatacatacatacatacataaaaaatatagcctaaggagctgg
attagtggggtaaaagcatggcatcggccagtatctacatatactggtgg
tgtataaaatttcagattatattagtatacataattggaggtaaagttac
acaaagaatattttcaaaaagtcagcaataaatttatgctgggttgtgag
attgaagaatttctatttcctttggacttttcttctctttctcacaattt
tctatagtaaatataatagggaaaattatcagtataaatcatcatgggga
gaagaaaaagaatggctgtaccctaggagtt
gaattccatatgaatagtgcagttatataattacatgcgtgtacacataa
aaatggacttaggctggagatatatccatataaatctatatctatttatc
tctttatctgtctgtctgtctatctatctatctatctatctatctatctc
ttcagcctgctaagcccatttagtgttgtaaatattttaaatctaatgtt
gtttctacaaattcagtagttactaataggttttatgtaaaaaaaattat
aaatcttgattcctagctttagaaccctaagtccataagtatgcagaaaa
aatgaagctgaattagcttattaaatttggactcaaggatcccctcctta
attgcaagtggccatgggaagggtaggagtacataggccaggaagactag
gggaggaggcttccatctatgtggctaccaggaagaccccagccctactg
gatagaggctttttagaagtgcctcatttgggaagcagccatagcccttt
ataaaccccccacttatgttctataaggatgccccaaaagctcactggct
ccccagaatgagcttttgtggaatcatgcttctgtttgttgttgagacct
tatagggagcggtaaatgttgcttatgtctgtccctctatctaaaggagg
tctctggtaattcttataacttgtaaaatttcactggactaataaaacaa
aatcattaaaaatatttataaaataatgtaatagaaatgtcacaatttgt
ttgttcaagtgcatactctctgctagcattatatttaagatgtctcagtc
tttaatcacaaaaaaagccccaacattattcactgctgacaagttaattc
tcatattgaaagactttgtttgcagcaaatttaaatttttaaattaaata
taaacagtatctaattaatgaactgcttaattgttctttctgctaaggaa
tagcattccttgcattaaatccttaaataaacgaaggctacagtctcaat
taagatgtaatgaactctactcttggacttctagaaaatgacgatataat
aaataacttcgagtataattgtgtggacctactataaggaaaatctagat
gctgaacctcaccatctgctttataagggcaagtgtaaagccaaagaacc
aggctgctaacttcaggaacactcatccttagtaggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193426435_193427522
seq2: B6Ng01-009D19.b_48_1128

seq1  GAATTCCCTGCCACATGTCTTGATAGGAACTAGAAAGCATGATGTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCCACATGTCTTGATAGGAACTAGAAAGCATGATGTCTCTG  50

seq1  TTGCCCTCTTGATATTCTACGTCTCTCTTGCTGTGAGTGTCCATACGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCTTGATATTCTACGTCTCTCTTGCTGTGAGTGTCCATACGTGG  100

seq1  ACCGGACTAATGGTTGCCATGACAGAATGAATTGGGAGCCACAAATGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGACTAATGGTTGCCATGACAGAATGAATTGGGAGCCACAAATGTGG  150

seq1  AGAAGTGGGAGATGATGCACTGTGGCAATAGAACAGTGACTGTGAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGAGATGATGCACTGTGGCAATAGAACAGTGACTGTGAGACAT  200

seq1  TCAGTCTCAGGAAAGCACTGCCATGGAGGCTGTGTCACAGCTGGTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCAGGAAAGCACTGCCATGGAGGCTGTGTCACAGCTGGTCACTG  250

seq1  TGGTGTGTGTGCACTGTGACCTAGAACCAGTAATGAGGCCACAGTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTGTGCACTGTGACCTAGAACCAGTAATGAGGCCACAGTGTGTT  300

seq1  TAGTAGATGGGTTTGGGGGCTTTGATCTTAGCTGTTCTGTGGCCTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGATGGGTTTGGGGGCTTTGATCTTAGCTGTTCTGTGGCCTCTCCT  350

seq1  TCCATATTTAGTGTTGTAGACTTTCTAGTAATCCTGTGAGCCACTTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTAGTGTTGTAGACTTTCTAGTAATCCTGTGAGCCACTTACTA  400

seq1  TTTTATATAATGAGGTGTGCAACATTTTGTGTCTTAAAACTTACTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAATGAGGTGTGCAACATTTTGTGTCTTAAAACTTACTGTTTT  450

seq1  CTTTGCTCTCGCTCATCATTCAGCAGTTTGAATTGCATTCTGATGATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTCGCTCATCATTCAGCAGTTTGAATTGCATTCTGATGATAGT  500

seq1  TCTGGTGTCCCCAGAGGTTGCTCATGACTGTAGTTCTCTGGAGCCTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTCCCCAGAGGTTGCTCATGACTGTAGTTCTCTGGAGCCTTGGC  550

seq1  CGAAACTGGATAGTCAAAGGTCACCCTTTTCATAGTGTAGAACAGTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACTGGATAGTCAAAGGTCACCCTTTTCATAGTGTAGAACAGTGTGG  600

seq1  TTCTCAACCTCTGGATCATAACCTATTTAGGGGGTCACATATGAGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCTCTGGATCATAACCTATTTAGGGGGTCACATATGAGAACTT  650

seq1  ACACTACAATTCATAGCAGTAACAAAGTTACAGTTCTGAAGTAGCAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACAATTCATAGCAGTAACAAAGTTACAGTTCTGAAGTAGCAACAA  700

seq1  AATAATAGTGTGGTTGGGGTCACCTAAGATATATATACACACATACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGTGTGGTTGGGGTCACCTAAGATATATATACACACATACATAC  750

seq1  ATACATACATACATACATACATACATAAAAAATATAGCCTAAGGAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACATACATACATAAAAAATATAGCCTAAGGAGCTGG  800

seq1  ATTAGT-GGGTAAAAGCATGGCATCGGCCAGTATCTACATATACTGGTGG  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGGGGTAAAAGCATGGCATCGGCCAGTATCTACATATACTGGTGG  850

seq1  TGTATAAAATTTCAGATTATATTAGTATACATAAATGGAGGTAAAGTTAC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTATAAAATTTCAGATTATATTAGTATACATAATTGGAGGTAAAGTTAC  900

seq1  ACAAAGAATA-TTTCAAAAAGTCAGCAATAAATTTATGCTGGTTTGTGAG  948
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  ACAAAGAATATTTTCAAAAAGTCAGCAATAAATTTATGCTGGGTTGTGAG  950

seq1  ATTTGAAGAAATTTCTATTTCCTTTGGACTTTTCTGCTCCTTCCCAACAA  998
      | |||||| |||||||||||||||||||||||||| ||| ||| | ||||
seq2  A-TTGAAG-AATTTCTATTTCCTTTGGACTTTTCTTCTCTTTCTC-ACAA  997

seq1  GTTTTCTAATAGTAAATATTAATAGGGGAAAATTATCAAGTTATAAAACA  1048
       |||||| |||||||||| ||||| |||||||||||||   |||||| ||
seq2  -TTTTCT-ATAGTAAATA-TAATA-GGGAAAATTATCA--GTATAAATCA  1041

seq1  TCATGGGAAGAAGAAAAAGAATGGCTGTACCCTAGGAGTT  1088
      ||||||| ||||||||||||||||||||||||||||||||
seq2  TCATGGGGAGAAGAAAAAGAATGGCTGTACCCTAGGAGTT  1081

seq1: chr1_193576838_193578052
seq2: B6Ng01-009D19.g_69_1257 (reverse)

seq1  CAGCCTACTAAAGATGATGGTTGTTTCCCTGAAAAGTTAAGGCAAGAACT  50
      ||||||||||| |||||     || | ||||  ||||||  |||    ||
seq2  CAGCCTACTAAGGATGA-----GTGTTCCTG--AAGTTA--GCA--GCCT  39

seq1  GTGTTCTTTGGGCTTTCACATTGCCTTTATAAAAGCAGATGGTGAGTGTC  100
      | |||||||||  || ||| ||||| |||| |||||||||||||||  ||
seq2  G-GTTCTTTGGCTTTACAC-TTGCCCTTAT-AAAGCAGATGGTGAGGTTC  86

seq1  AGCATCTAGTTTTTTTCTTTATATGTAAGTTCACACAATTTAATACTCGG  150
      |||||||||   ||||| ||||| ||| || |||||||||  ||||||| 
seq2  AGCATCTAG--ATTTTCCTTATA-GTAGGTCCACACAATT--ATACTCGA  131

seq1  AGTTATTTATTTATATCTGTCATTTTCTAAGAGGTCAAGGGTAGAGTTCA  200
      ||||||||| ||||||| |||||||||||  ||  |||| ||||||||||
seq2  AGTTATTTA-TTATATC-GTCATTTTCTAGAAGTCCAAGAGTAGAGTTCA  179

seq1  TTACATTCTTAATTGAGACTGTAGCCTTCGTTTTATTTAAGG-TTTAATG  249
      ||||| |||||||||||||||||||||||| ||||||||||| |||||||
seq2  TTACA-TCTTAATTGAGACTGTAGCCTTCG-TTTATTTAAGGATTTAATG  227

seq1  CAAGGAATGCTTATTTCCTTAGCAGGAAAGAACAATTAAGCAGTTCATTA  299
      |||||||||||   |||||||||| |||||||||||||||||||||||||
seq2  CAAGGAATGCT--ATTCCTTAGCA-GAAAGAACAATTAAGCAGTTCATTA  274

seq1  ATTAGATACTGTTTATATTTAATTTAAAAATTTAAATTTGCTGCAAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATACTGTTTATATTTAATTTAAAAATTTAAATTTGCTGCAAACAA  324

seq1  AGTCTTTTCAATATGAGAATTAACTTGTCAGCAGTGAATAATGTTGGGGC  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTC-TTTCAATATGAGAATTAACTTGTCAGCAGTGAATAATGTTGGGGC  373

seq1  TTTTTTTGTGATTAAAGACTGAGGCATCTTAAATATAATGCTAGCAGAGA  449
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTTTGTGATTAAAGACTGAGACATCTTAAATATAATGCTAGCAGAGA  423

seq1  GTATGCACTTGAACAAACAAATTGTGACATTTCTATTACATTATTTTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCACTTGAACAAACAAATTGTGACATTTCTATTACATTATTTTATA  473

seq1  AATATTTTTAATGATTTTGTTTTATTAGTCCAGTGAAATTTTACAAGTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTAATGATTTTGTTTTATTAGTCCAGTGAAATTTTACAAGTTA  523

seq1  TAAGAATTACCAGAGACCTCCTTTAGATAGAGGGACAGACATAAGCAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTACCAGAGACCTCCTTTAGATAGAGGGACAGACATAAGCAACA  573

seq1  TTTACCGCTCCCTATAAGGTCTCAACAACAAACAGAAGCATGATTCCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCGCTCCCTATAAGGTCTCAACAACAAACAGAAGCATGATTCCACA  623

seq1  AAAGCTCATTCTGGGGAGCCAGTGAGCTTTTGGGGCATCCTTATAGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATTCTGGGGAGCCAGTGAGCTTTTGGGGCATCCTTATAGAACA  673

seq1  TAAGTGGGGGGTTTATAAAGGGCTATGGCTGCTTCCCAAATGAGGCACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGGGGTTTATAAAGGGCTATGGCTGCTTCCCAAATGAGGCACTT  723

seq1  CTAAAAAGCCTCTATCCAGTAGGGCTGGGGTCTTCCTGGTAGCCACATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGCCTCTATCCAGTAGGGCTGGGGTCTTCCTGGTAGCCACATAG  773

seq1  ATGGAAGCCTCCTCCCCTAGTCTTCCTGGCCTATGTACTCCTACCCTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCCTCCTCCCCTAGTCTTCCTGGCCTATGTACTCCTACCCTTCC  823

seq1  CATGGCCACTTGCAATTAAGGAGGGGATCCTTGAGTCCAAATTTAATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCACTTGCAATTAAGGAGGGGATCCTTGAGTCCAAATTTAATAAG  873

seq1  CTAATTCAGCTTCATTTTTTCTGCATACTTATGGACTTAGGGTTCTAAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCAGCTTCATTTTTTCTGCATACTTATGGACTTAGGGTTCTAAAG  923

seq1  CTAGGAATCAAGATTTATAATTTTTTTTACATAAAACCTATTAGTAACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATCAAGATTTATAATTTTTTTTACATAAAACCTATTAGTAACTA  973

seq1  CTGAATTTGTAGAAACAACATTAGATTTAAAATATTTACAACACTAAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTGTAGAAACAACATTAGATTTAAAATATTTACAACACTAAATG  1023

seq1  GGCTTAGCAGGCTGAAGAGATAGATAGATAGATAGATAGATAGATAGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGCAGGCTGAAGAGATAGATAGATAGATAGATAGATAGATAGACA  1073

seq1  GACAGACAGATAAAGAGATAAATAGATATAGATTTATATGGATATATCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGATAAAGAGATAAATAGATATAGATTTATATGGATATATCTC  1123

seq1  CAGCCTAAGTCCATTTTTATGTGTACACGCATGTAATTATATAACTGCAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAAGTCCATTTTTATGTGTACACGCATGTAATTATATAACTGCAC  1173

seq1  TATTCATATGGAATTC  1215
      ||||||||||||||||
seq2  TATTCATATGGAATTC  1189