BAC Information

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BAC

Clone NameB6Ng01-009D23
Chromosome1 (Build37)
Map Location 50,095,970 - 50,097,139
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009D23.bB6Ng01-009D23.g
ACCDH845241DH845242
length1,1401,217
definitionDH845241|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D23, 5' end.DH845242|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatacaaaaccttcatgattgagggattatagtcacattcacgc
tagctttgcaaaggctgaaaattggtgtgctcccttaccttatgcttgtt
tatttgtgttcattttatcgattgtattttcagtagagatgtccttcaaa
tgcttttctacttattattactttaggagcgtatatgatgggtggtgatt
ccttctccaaagtcagtgaatatttcattttgagaatttgacatttttca
tgactagcatgatgacatattaatattctttatagtacaagtagtatgtt
gagatgaatatttaattttcaattcaaatcttatactcttgtgcttgttc
tggatcgtgaacctcaaaagaccatcaaagagccaattcagatacattca
cgctagagtctttttattcaagcttcagcttgggcttaccactaaccctg
ctacagcatgaccagatggtaaatctacaaccccttagcaggacaaggtt
ttaaaggaaaaggcaagcaaaccacagggtttcaagcctgtcaagcacct
aacttgaaggactattgtaagctgacaggggtactcgaaagcaaaccatg
aacaatcataatctaaaagtacatctggaactatatcagtcccctcttga
ttagctattgctcaggagtagctagagagtaactctggagtatgtgccag
agataaacctggaacttgagtgcagcttgggttcagttgcaagtcaagtt
ctcaggctctttttctcttaaattggatgcagatcacaagaaggtgtagg
tttggcctctcattctgacctttctctggtagctagaagccctaatcatg
ggactacctgaaactcttaggcttccttatggagggactggcagtgatgt
ttatttaccacaaactgaatagtccaaagtctctctttcatgagctgaac
aaatttgtttaaatgctggacctccaggtgagggcagacgttaaatgagc
aggggtcagtaggtaggcatcaggtagcacaggatagctgtaagcatgat
caacacttttgcagtctcattctcttttctctgcagctttccttaactgc
catcgacattttgaacctctcgagtgtcacatagaaatag
gaattctttatatatttggatatcagcccttgtcagatgttaggttgttg
aactttttccattctgtaggttcctgttttgtccttttgacagcatcccc
tccttcaccaatacattcaaagctatttcccactttctcattgatcaggt
ttggatatgttttatgttgagctcttttatccatctggattttaattttg
tacagggtagtggatataactcttttgtatcctgttagaccacattttga
agatgctttatttttccagtgtaattttgtgacaaaaacctggtgtccat
aggtgttggaatttacttctaggacatcaacttgattccattgatcaatg
tgtctgtttttatgccaatagatatgatttatattactattgttctgaag
tacagcttgaatcagggtggtaataccttcagaagttcttttattgtatg
ggattagtttagatatcctgtgttttttgctctccatttgagtataggtt
tgtaaagaactctgttggaattttgagagtaattgcattaagtctgtaca
ttgcttttaataggattgccatgtctacttcattactcctacagatcaat
gaacatgggagatttttctatcttctgatatcttcttcaaatcaattttt
aacagacttgaagttcctgtcatgtaggtctttcacttctggattgggta
caccaagaaattttattttaattgtggctactataaagggtattatttcc
caaattgattagcccacttatcttattgcttttttacagtaggggctatt
gatttttcttttcttttctttcttctttctttcttttttcttttgagtta
gtttgtatcagccactttgctgaatgtatttatcagatgttggagttttc
tgtagagttggagtcacttatgtatactatcatatcatctggaaatatat
atactttgacttcttatttttcatcagggtctctagctaaatttcaagtt
cataatgaatagatgttgaataggtgaaaagacttttctgtcctggattt
agtgggacgggctattatggtaattattggatggtagcctatggactcct
ttagtgtgaactatttaacatggaggtggccactggcgtactgtaatccc
gagacttactagggggctgaattttcagaaattttcaactaccaggaaga
tatactctggtgcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50095970_50097139
seq2: B6Ng01-009D23.b_45_1184 (reverse)

seq1  CTATTTCTATGTTGACCACTCTGGAGGAGTCAAAAATGTCGATGGGCAAA  50
      ||||||||||| ||| |||||  |||  ||  |||||||||||||    |
seq2  CTATTTCTATG-TGA-CACTC--GAGAGGTTCAAAATGTCGATGG---CA  43

seq1  GTTAGAGAAAGCCTGCCAAGAGAAAAAGAGAATGAGAACCTGCAAAAAGT  100
      ||||  ||||| ||||  |||| ||||||||||||||  ||||||||   
seq2  GTTAAGGAAAG-CTGC--AGAG-AAAAGAGAATGAGA--CTGCAAAA---  84

seq1  TGTTTTGAATCATGCTTTAACAGCTATCCCTGGTTGCCTACCCTGATGCC  150
       || ||| |||||||||  |||||||| ||||  || ||| |||||||||
seq2  -GTGTTG-ATCATGCTT--ACAGCTAT-CCTG--TG-CTA-CCTGATGCC  125

seq1  TACCCTACTGGACCCCTTGCTCATTTAACGTCTGCCCCTCACCTGGAGGT  200
      || |||||| |||||| ||||||||||||||||| |||||||||||||||
seq2  TA-CCTACT-GACCCC-TGCTCATTTAACGTCTG-CCCTCACCTGGAGGT  171

seq1  CCAGCATTTTAAACAAATTTGTTCAGCTCATGAAAGAGAGACTTTGGACT  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCA-TTTAAACAAATTTGTTCAGCTCATGAAAGAGAGACTTTGGACT  220

seq1  ATTCAGTTTGTGGTAAATAAACATCACTGCCAGTCCCTCCATAAGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTGTGGTAAATAAACATCACTGCCAGTCCCTCCATAAGGAAGC  270

seq1  CTAAGAGTTTCAGGTAGTCCCATGATTAGGGCTTCTAGCTACCAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTTTCAGGTAGTCCCATGATTAGGGCTTCTAGCTACCAGAGAAA  320

seq1  GGTCAGAATGAGAGGCCAAACCTACACCTTCTTGTGATCTGCATCCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAATGAGAGGCCAAACCTACACCTTCTTGTGATCTGCATCCAATT  370

seq1  TAAGAGAAAAAGAGCCTGAGAACTTGACTTGCAACTGAACCCAAGCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAAAGAGCCTGAGAACTTGACTTGCAACTGAACCCAAGCTGCA  420

seq1  CTCAAGTTCCAGGTTTATCTCTGGCACATACTCCAGAGTTACTCTCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTCCAGGTTTATCTCTGGCACATACTCCAGAGTTACTCTCTAGC  470

seq1  TACTCCTGAGCAATAGCTAATCAAGAGGGGACTGATATAGTTCCAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGAGCAATAGCTAATCAAGAGGGGACTGATATAGTTCCAGATGT  520

seq1  ACTTTTAGATTATGATTGTTCATGGTTTGCTTTCGAGTACCCCTGTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGATTATGATTGTTCATGGTTTGCTTTCGAGTACCCCTGTCAGC  570

seq1  TTACAATAGTCCTTCAAGTTAGGTGCTTGACAGGCTTGAAACCCTGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAGTCCTTCAAGTTAGGTGCTTGACAGGCTTGAAACCCTGTGGT  620

seq1  TTGCTTGCCTTTTCCTTTAAAACCTTGTCCTGCTAAGGGGTTGTAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCCTTTTCCTTTAAAACCTTGTCCTGCTAAGGGGTTGTAGATTT  670

seq1  ACCATCTGGTCATGCTGTAGCAGGGTTAGTGGTAAGCCCAAGCTGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGGTCATGCTGTAGCAGGGTTAGTGGTAAGCCCAAGCTGAAGCT  720

seq1  TGAATAAAAAGACTCTAGCGTGAATGTATCTGAATTGGCTCTTTGATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAAGACTCTAGCGTGAATGTATCTGAATTGGCTCTTTGATGGT  770

seq1  CTTTTGAGGTTCACGATCCAGAACAAGCACAAGAGTATAAGATTTGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGGTTCACGATCCAGAACAAGCACAAGAGTATAAGATTTGAATT  820

seq1  GAAAATTAAATATTCATCTCAACATACTACTTGTACTATAAAGAATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAATATTCATCTCAACATACTACTTGTACTATAAAGAATATTA  870

seq1  ATATGTCATCATGCTAGTCATGAAAAATGTCAAATTCTCAAAATGAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCATCATGCTAGTCATGAAAAATGTCAAATTCTCAAAATGAAATA  920

seq1  TTCACTGACTTTGGAGAAGGAATCACCACCCATCATATACGCTCCTAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGACTTTGGAGAAGGAATCACCACCCATCATATACGCTCCTAAAG  970

seq1  TAATAATAAGTAGAAAAGCATTTGAAGGACATCTCTACTGAAAATACAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAGTAGAAAAGCATTTGAAGGACATCTCTACTGAAAATACAAT  1020

seq1  CGATAAAATGAACACAAATAAACAAGCATAAGGTAAGGGAGCACACCAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAATGAACACAAATAAACAAGCATAAGGTAAGGGAGCACACCAAT  1070

seq1  TTTCAGCCTTTGCAAAGCTAGCGTGAATGTGACTATAATCCCTCAATCAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCTTTGCAAAGCTAGCGTGAATGTGACTATAATCCCTCAATCAT  1120

seq1  GAAGGTTTTGTATAGAATTC  1170
      ||||||||||||||||||||
seq2  GAAGGTTTTGTATAGAATTC  1140