BAC Information

Click to search

BAC

Clone NameB6Ng01-009F20
Chromosome1 (Build37)
Map Location 155,441,346 - 155,574,682
singlet/doubletdoublet
Overlap geneLOC626096, Rgs8
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F20.bB6Ng01-009F20.g
ACCDH845326DH845327
length1,161890
definitionDH845326|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F20, 5' end.DH845327|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,573,516 - 155,574,682)(155,441,346 - 155,442,242)
sequence
gaattccagattgatgctatattctctaccccttcccttcttagcaagca
gagacatatgcgccaatagttaagtgggccacggaagtgcaataccaatg
aattcctaggggaaaccataaagtgaaaaaatactgtttgatagaaaaga
ttattctctaaaacatttctatcatagactggattttttttccttttgct
ttttattaataatgttgcatgcatagtcacctagtgataaccagtgcttt
aaaatgagtaatttggtcagagacaatgggaagaggaaagtacagtgaga
atgaatgatggcttctagatctttctattactgggtaatcagcccatttc
ttatgactcagtttctctctttgcagtatagtatagtcatttgtattttt
gtgaggcggtggtgagatttagattatgctgtctgtttgaggccccgtgg
gagctgcacagatattaaaaggccacctgtaggcacctgtaaagagagtt
gactgtccctgggttgttatgctgaagttgccaccctcacctgccaagtg
ccctccctaggactaggtgtctatcttcccgagagtgccagggctgcgcc
actcctagcaaggagggctggtgcagcagcgctcacgctttctctaaggc
cagagcagcaaaacgggcagatggttacaaggctgaagacgctgtccccg
gctgctactgagaatcaacacacaagtgtttcccctggcagcagacagct
gctgcgttaggtgtgaatcaaacgtgtaaacctctggagatttctctctc
gagcgcgtgcatgtctatgagacacaatttagcagagctgccgaaaatat
ggtgacacattgcctcagcacagaggctctgaggcgatggaggcggggag
cgtgagctgtctcccagcaggctcagagtgtccagtcctgtcaatgccct
cctgtgtgcctcctgtcagtatgccatctctgtgacacccagcacttggc
caagacactgacttaatctcagacatacttagtcttcacttgagacctca
ggtagactgaaatgaccctacttcctccatctcctcaagattctctcttc
cgggaggcaaaggcagaagaattcttgtgagattgaagccagcttggctc
tcaatatcaag
gaattcaaggccagacagggctatgtagagaaaccctgtctcaaaaacaa
aaccacaagacccacccacccccatcccgtagtctttgttctaatttttt
cctaattgtgtattcaccaattaagttcataataactagcaaacaaataa
cagacagggcagtcgagatggctagctgggtaaaggggactgctaccaag
cttgaggacttgagcttgggtcttcaggatccacatgagagagagagaga
gagagagagagagagagagagagagagagagagagagatctttcctgaaa
actgtcttctgatctctacgtgtgccatggcatacatgtatgtaccaact
cgctcagaggataatggttatctaatttcttcaaagccgtgcacaagaca
gtggtagggagatgctgtgtgtggtatgtggattgactctcagaccatga
ctgcttccctgtgcccgcttccctgctagaaagaacctgtgtgatgcttc
ttgcttgttaccactcttgggtgagagttgtctcccgggttagacactta
ctagtggctgcagttggtgtgaccagagtccccggggcacagtggctttg
attacagcagactctgaagtgttctgcttctattagagcaccagccagcc
accggaaggactttggagacacagcatttttttctgtagaaccttttcaa
tgggaagaatgctgaaatgtactttttcttcttgggaaagctccaagctg
gatgaatgatgtagctggtattgtatttttgttttcacagctgcccaaat
tactgtggttctcctggccttcatgatatcctgttgaatgaatgtgctaa
agataggaactgcagcttctttgttgaattgttctttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155573516_155574682
seq2: B6Ng01-009F20.b_46_1206 (reverse)

seq1  CTTGATATTGTAGA-CCAGGCTGGCCTCAAACTCAC-AGAGATCTTCCTG  48
      |||||||||| ||| ||| |||||| |||| ||||| |||  |||| |||
seq2  CTTGATATTG-AGAGCCAAGCTGGCTTCAATCTCACAAGAATTCTT-CTG  48

seq1  CCTCTGCCTCCTGAGAGAGA-AACCTTGA-GAGATGTGAGAAGTAGGGTC  96
      ||| ||||||| |  ||||| || ||||| ||||||   |||||||||||
seq2  CCTTTGCCTCCCGGAAGAGAGAATCTTGAGGAGATGGAGGAAGTAGGGTC  98

seq1  ATTTCCAGTCTACCTGGAGGTCTCTAGGTGGAGACTTAGTATGTCTGGAG  146
      |||| |||||||||| |||||||| | ||| ||||| ||||||||| |||
seq2  ATTT-CAGTCTACCT-GAGGTCTC-AAGTGAAGACTAAGTATGTCT-GAG  144

seq1  ATTAAGTCAGTGTCTTGGCCAAGTGCCTGGGTGTCACAGAGATGGCATAC  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTAAGTCAGTGTCTTGGCCAAGTG-CTGGGTGTCACAGAGATGGCATAC  193

seq1  TGACAGGGAGGCACACAGGAGGGCATTGACAGGACTGGACACTCTGAGCC  246
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  TGACA-GGAGGCACACAGGAGGGCATTGACAGGACTGGACACTCTGAG-C  241

seq1  CTGCTGGGAGACAGCTCACGCTCCCCGCCTCCATCGCCCTCAGAGCCTCT  296
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGCTGGGAGACAGCTCACGCTCCCCGCCTCCATCG-CCTCAGAGCCTCT  290

seq1  GTGCTGAGGCAATGTGTCACCATATTTTCGGCAGCTCTGCTAAATTGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGCAATGTGTCACCATATTTTCGGCAGCTCTGCTAAATTGTGT  340

seq1  CTCATAGACATGCACGCGCTCGAGAGAGAAATCTCCAGAGGTTTACACGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGACATGCACGCGCTCGAGAGAGAAATCTCCAGAGGTTTACACGT  390

seq1  TTGATTCACACCTAACGCAGCAGCTGTCTGCTGCCAGGGGAAACACTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCACACCTAACGCAGCAGCTGTCTGCTGCCAGGGGAAACACTTGT  440

seq1  GTGTTGATTCTCAGTAGCAGCCGGGGACAGCGTCTTCAGCCTTGTAACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATTCTCAGTAGCAGCCGGGGACAGCGTCTTCAGCCTTGTAACCA  490

seq1  TCTGCCCGTTTTGCTGCTCTGGCCTTAGAGAAAGCGTGAGCGCTGCTGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCGTTTTGCTGCTCTGGCCTTAGAGAAAGCGTGAGCGCTGCTGCA  540

seq1  CCAGCCCTCCTTGCTAGGAGTGGCGCAGCCCTGGCACTCTCGGGAAGATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCCTTGCTAGGAGTGGCGCAGCCCTGGCACTCTCGGGAAGATA  590

seq1  GACACCTAGTCCTAGGGAGGGCACTTGGCAGGTGAGGGTGGCAACTTCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTAGTCCTAGGGAGGGCACTTGGCAGGTGAGGGTGGCAACTTCAG  640

seq1  CATAACAACCCAGGGACAGTCAACTCTCTTTACAGGTGCCTACAGGTGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAACCCAGGGACAGTCAACTCTCTTTACAGGTGCCTACAGGTGGC  690

seq1  CTTTTAATATCTGTGCAGCTCCCACGGGGCCTCAAACAGACAGCATAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATATCTGTGCAGCTCCCACGGGGCCTCAAACAGACAGCATAATC  740

seq1  TAAATCTCACCACCGCCTCACAAAAATACAAATGACTATACTATACTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCACCACCGCCTCACAAAAATACAAATGACTATACTATACTGCA  790

seq1  AAGAGAGAAACTGAGTCATAAGAAATGGGCTGATTACCCAGTAATAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAACTGAGTCATAAGAAATGGGCTGATTACCCAGTAATAGAAA  840

seq1  GATCTAGAAGCCATCATTCATTCTCACTGTACTTTCCTCTTCCCATTGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGAAGCCATCATTCATTCTCACTGTACTTTCCTCTTCCCATTGTC  890

seq1  TCTGACCAAATTACTCATTTTAAAGCACTGGTTATCACTAGGTGACTATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCAAATTACTCATTTTAAAGCACTGGTTATCACTAGGTGACTATG  940

seq1  CATGCAACATTATTAATAAAAAGCAAAAGGAAAAAAAATCCAGTCTATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAACATTATTAATAAAAAGCAAAAGGAAAAAAAATCCAGTCTATGA  990

seq1  TAGAAATGTTTTAGAGAATAATCTTTTCTATCAAACAGTATTTTTTCACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTTTTAGAGAATAATCTTTTCTATCAAACAGTATTTTTTCACT  1040

seq1  TTATGGTTTCCCCTAGGAATTCATTGGTATTGCACTTCCGTGGCCCACTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTTCCCCTAGGAATTCATTGGTATTGCACTTCCGTGGCCCACTT  1090

seq1  AACTATTGGCGCATATGTCTCTGCTTGCTAAGAAGGGAAGGGGTAGAGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGGCGCATATGTCTCTGCTTGCTAAGAAGGGAAGGGGTAGAGAA  1140

seq1  TATAGCATCAATCTGGAATTC  1167
      |||||||||||||||||||||
seq2  TATAGCATCAATCTGGAATTC  1161

seq1: chr1_155441346_155442242
seq2: B6Ng01-009F20.g_68_957

seq1  GAATTCAAGGCCAGACAGGGCTATGTAGAGAAACCCTGTCTCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGACAGGGCTATGTAGAGAAACCCTGTCTCAAAAACAA  50

seq1  AACCACAAGACCCACCCACCCCCATCCCGTAGTCTTTGTTCTAATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGACCCACCCACCCCCATCCCGTAGTCTTTGTTCTAATTTTTT  100

seq1  CCTAATTGTGTATTCACCAATTAAGTTCATAATAACTAGCAAACAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGTGTATTCACCAATTAAGTTCATAATAACTAGCAAACAAATAA  150

seq1  CAGACAGGGCAGTCGAGATGGCTAGCTGGGTAAAGGGGACTGCTACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGCAGTCGAGATGGCTAGCTGGGTAAAGGGGACTGCTACCAAG  200

seq1  CTTGAGGACTTGAGCTTGGGTCTTCAGGATCCACATGAGAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGACTTGAGCTTGGGTCTTCAGGATCCACATGAGAGAGAGAGAGA  250

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTCCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTCCTGAAA  300

seq1  ACTGTCTTCTGATCTCTACGTGTGCCATGGCATACATGTATGTACCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTCTGATCTCTACGTGTGCCATGGCATACATGTATGTACCAACT  350

seq1  CGCTCAGAGGATAATGGTTATCTAATTTCTTCAAAGCCGTGCACAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGAGGATAATGGTTATCTAATTTCTTCAAAGCCGTGCACAAGACA  400

seq1  GTGGTAGGGAGATGCTGTGTGTGGTATGTGGATTGACTCTCAGACCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGGAGATGCTGTGTGTGGTATGTGGATTGACTCTCAGACCATGA  450

seq1  CTGCTTCCCTGTGCCCGCTTCCCTGCTAGAAAGAACCTGTGTGATGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTGTGCCCGCTTCCCTGCTAGAAAGAACCTGTGTGATGCTTC  500

seq1  TTGCTTGTTACCACTCTTGGGTGAGAGTTGTCTCCCGGGTTAGACACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTACCACTCTTGGGTGAGAGTTGTCTCCCGGGTTAGACACTTA  550

seq1  CTAGTGGCTGCAGTTGGTGTGACCAGAGTCCCCGGGGCACAGTGGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGCTGCAGTTGGTGTGACCAGAGTCCCCGGGGCACAGTGGCTTTG  600

seq1  ATTACAGCAGACTCTGAAGTGTTCTGCTTCTATTAGAGCACCAGCCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCAGACTCTGAAGTGTTCTGCTTCTATTAGAGCACCAGCCAGCC  650

seq1  ACCGGAAGGACTTTGGAGACACAGCATTTTTTTCTGTAGAACC-TTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCGGAAGGACTTTGGAGACACAGCATTTTTTTCTGTAGAACCTTTTCAA  700

seq1  TGGGAAGAATGCTGAAATGTACTTTTTCTTCTTGGGAAAGCTCCAAGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAATGCTGAAATGTACTTTTTCTTCTTGGGAAAGCTCCAAGCTG  750

seq1  GATGAATGATGTAGCTTGGTATTGTTATTTTTGTTTTTCACAGCTGCCCA  799
      ||||||||||||||| |||||||| |||||||| ||||||||||||||||
seq2  GATGAATGATGTAGC-TGGTATTG-TATTTTTG-TTTTCACAGCTGCCCA  797

seq1  AATTACTGTGGTTCTCCTGGTCCATTCATGATATCCTTGTTTGAATGAAT  849
      ||||||||||||||||||||  | |||||||||||||   ||||||||||
seq2  AATTACTGTGGTTCTCCTGG--CCTTCATGATATCCT--GTTGAATGAAT  843

seq1  GTGCTAAAGATAGGAACTGCAGCTTCTTTGTTTGAATTGTCCTTTGTT  897
      |||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GTGCTAAAGATAGGAACTGCAGCTTCTTTG-TTGAATTGTTCTTTGTT  890