BAC Information

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BAC

Clone NameB6Ng01-009I09
Chromosome1 (Build37)
Map Location 35,532,732 - 35,686,934
singlet/doubletdoublet
Overlap genenone
Upstream geneTesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
Downstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I09.bB6Ng01-009I09.g
ACCDH845441DH845442
length780697
definitionDH845441|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I09, 5' end.DH845442|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,532,732 - 35,533,509)(35,686,238 - 35,686,934)
sequence
gaattctcaacataaggagagtcaaacttcagagcgaaaacattacatgg
actcccacaaagcaattgtcattccaaccagtcccgaacttaaatatgca
ttgagtttttaaaaattctgttcatttccatttatgtgtacatatgtgtg
cctgaggatatgcgtgtgtaccccatgcatgcaggtaccctgagaggcca
gaagagggtgtcagacctcctgggaataaagttaaaggcaattgtattca
caaacaggtgttaagggtttgaaatctaataaaaaattctagtaagtata
taaattttatgcatttagttgttttctgaaagctttcacttgaaatgcct
gtggtaattggtcacccgataataaacattatccctggggggcaatggta
tttgttaaaaatatatttaaaataattttggagatacagttaaaagaggg
gataaaaaacaatgctgtagcaagcaacagcccaaggagccttgacctgg
atatctaagtagtgagagccctgtaggctctaaatggcttctaaatgcac
caagaactttacaactcacacatgtaaggctgctcatatgcctaagaaaa
cagtaaaaagtagccaagctctcacctctgatagactttgatctcagtgt
gagtattcactgaagggtaaggcagagttcatagctcccaagtgtgtagt
ccagctctcgagcaccccagggggaaatctgagcatcctggcacattctt
gtaatccccagaactgaggggtgggtgggg
gaattctaccatctctcccttaagactgggtgcactgacttgcttttgaa
agaacctagtggggaaacccccactcaattcctgattcggtgtgcaccca
agaatcatgaacaaacagaccgtcttgatgtaaaaacatgaggtagttta
atggcggagctccaggtcaaaacatatctcacgcaggagacaatggattc
gaccacgaggcttggaagctaggggtttttatagaaaaggggctggggct
cagggaagaattggtgcggtttcacatgattggtccatttaaacatcagc
agactgtacatgcagataacatttaacttaggtcagaagggcgtgagata
gggaggcgccgggccagtccagcatgcattctctttatatttatggccaa
gcagcctcaggaatgtcttaacgacgggcctgctcgggcatgtcctggcc
tgttctgctatgttctcagccccaggtttcaaagtcacaaacaactcttt
gggctatttgacatacattacatgaatcacaggtctcaagttttattttc
tttcactttgacgtaataaagtactgacagggagaaagagcacccacaag
ctaaagtggcagacactaccgtagtcagatcgtgaatattaattttatca
gagacgtcttgtgtcactgcagcaggaatgagtaggcatcttattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_35532732_35533509
seq2: B6Ng01-009I09.b_43_822

seq1  GAATTCTCAACATAAGGAGAGTCAAACTTCAGAGCGAAAACATTACATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACATAAGGAGAGTCAAACTTCAGAGCGAAAACATTACATGG  50

seq1  ACTCCCACAAAGCAATTGTCATTCCAACCAGTCCCGAACTTAAATATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACAAAGCAATTGTCATTCCAACCAGTCCCGAACTTAAATATGCA  100

seq1  TTGAGTTTTTAAAAATTCTGTTCATTTCCATTTATGTGTACATATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTTAAAAATTCTGTTCATTTCCATTTATGTGTACATATGTGTG  150

seq1  CCTGAGGATATGCGTGTGTACCCCATGCATGCAGGTACCCTGAGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGATATGCGTGTGTACCCCATGCATGCAGGTACCCTGAGAGGCCA  200

seq1  GAAGAGGGTGTCAGACCTCCTGGGAATAAAGTTAAAGGCAATTGTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGTGTCAGACCTCCTGGGAATAAAGTTAAAGGCAATTGTATTCA  250

seq1  CAAACAGGTGTTAAGGGTTTGAAATCTAATAAAAAATTCTAGTAAGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGTGTTAAGGGTTTGAAATCTAATAAAAAATTCTAGTAAGTATA  300

seq1  TAAATTTTATGCATTTAGTTGTTTTCTGAAAGCTTTCACTTGAAATGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTATGCATTTAGTTGTTTTCTGAAAGCTTTCACTTGAAATGCCT  350

seq1  GTGGTAATTGGTCACCCGATAATAAACATTATCCCTGGGGGGCAATGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATTGGTCACCCGATAATAAACATTATCCCTGGGGGGCAATGGTA  400

seq1  TTTGTTAAAAATATATTTAAAATAATTTTGGAGATACAGTTAAAAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAAAATATATTTAAAATAATTTTGGAGATACAGTTAAAAGAGGG  450

seq1  GATAAAAAACAATGCTGTAGCAAGCAACAGCCCAAGGAGCCTTGACCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAACAATGCTGTAGCAAGCAACAGCCCAAGGAGCCTTGACCTGG  500

seq1  ATATCTAAGTAGTGAGAGCCCTGTAGGCTCTAAATGGCTTCTAAATGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAAGTAGTGAGAGCCCTGTAGGCTCTAAATGGCTTCTAAATGCAC  550

seq1  CAAGAACTTTACAACTCACACATGTAAGGCTGCTCATATGCCTAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTTACAACTCACACATGTAAGGCTGCTCATATGCCTAAGAAAA  600

seq1  CAGTAAAAAGTAGCCAAGCTCTCACCTCTGAGAGACTTTGATCTCAGTGT  650
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGTAAAAAGTAGCCAAGCTCTCACCTCTGATAGACTTTGATCTCAGTGT  650

seq1  GAGTATTCACTGAAGGGTAAGGCAGAGTTCACAGC-CCCAAGTGTGTAGC  699
      ||||||||||||||||||||||||||||||| ||| ||||||||||||| 
seq2  GAGTATTCACTGAAGGGTAAGGCAGAGTTCATAGCTCCCAAGTGTGTAGT  700

seq1  CCAGCTCTCGAGCACCCCA-GGGGAAAGCTGAGCATCCTGGCACATTCTT  748
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CCAGCTCTCGAGCACCCCAGGGGGAAATCTGAGCATCCTGGCACATTCTT  750

seq1  GTAA-CCCCAGAACCGAGGGGGTGGGTGGGG  778
      |||| ||||||||| || |||||||||||||
seq2  GTAATCCCCAGAACTGA-GGGGTGGGTGGGG  780

seq1: chr1_35686238_35686934
seq2: B6Ng01-009I09.g_70_765 (reverse)

seq1  CAATAAGATGCCTACTCATTCCTGCTGCAGTGACACAAGACGTCTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATGCCTACTCATTCCTGCTGCAGTGACACAAGACGTCTCTGAT  50

seq1  GGAATTAATATTCACGATCTGACTACGGTAGTGTCTGCCACTTTAGCTTG  100
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATATTCACGATCTGACTACGGTAGTGTCTGCCACTTTAGCTTG  100

seq1  TGGGTGCTCTTTCTCCCTGTCAGTACTTTATTACGTCAAAGTGAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTCTTTCTCCCTGTCAGTACTTTATTACGTCAAAGTGAAAGAAA  150

seq1  ATAAAACTTGAGACCTGTGATTCATGTAATGTATGTCAAATAGCCCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTGAGACCTGTGATTCATGTAATGTATGTCAAATAGCCCAAAG  200

seq1  AGTTGTTTGTGACTTTGAAACCTGGGGCTGAGAACATAGCAGAACAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTGTGACTTTGAAACCTGGGGCTGAGAACATAGCAGAACAGGCC  250

seq1  AGGACATGCCCGAGCAGGCCCGTCGTTAAGACATTCCTGAGGCTGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGCCCGAGCAGGCCCGTCGTTAAGACATTCCTGAGGCTGCTTGG  300

seq1  CCATAAATATAAAGAGAATGCATGCTGGACTGGCCCGGCGCCTCCCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATATAAAGAGAATGCATGCTGGACTGGCCCGGCGCCTCCCTATC  350

seq1  TCACGCCCTTCTGACCTAAGTTAAATGTTATCTGCATGTACAGTCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCCTTCTGACCTAAGTTAAATGTTATCTGCATGTACAGTCTGCTG  400

seq1  ATGTTTAAATGGACCAATCATGTGAAACCGCACCAATTCTTCCCTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAATGGACCAATCATGTGAAACCGCACCAATTCTTCCCTGAGCC  450

seq1  CCAGCCCCTTTTCTATAAAAACCCCTAGCTTCCAAGCCTCGTGGTCGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCTTTTCTATAAAAACCCCTAGCTTCCAAGCCTCGTGGTCGAAT  500

seq1  CCATTGTCTCCTGCGTGAGATATGTTTTGACCTGGAGCTCCGCCATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCTCCTGCGTGAGATATGTTTTGACCTGGAGCTCCGCCATTAAA  550

seq1  CTACCTCATGTTTTTACATCAAGACGGTCTGTTTGTTCATGATTCTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCATGTTTTTACATCAAGACGGTCTGTTTGTTCATGATTCTTGGG  600

seq1  TGCACACCGAATCAGGAATTGAGTGGGGGTTTCCCCACTAGGTTCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCGAATCAGGAATTGAGTGGGGGTTTCCCCACTAGGTTCTTTCA  650

seq1  AAAGCAAGTCAGTGCACCCAGTCTTAAGGGAGAGATGGTGTGAATTC  697
      |||||||||||||||||||||||||||||||||||||||  ||||||
seq2  AAAGCAAGTCAGTGCACCCAGTCTTAAGGGAGAGATGGT-AGAATTC  696