BAC Information

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BAC

Clone NameB6Ng01-009K24
Chromosome1 (Build37)
Map Location 59,723,476 - 59,894,201
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K24.bB6Ng01-009K24.g
ACCDH845563DH845564
length1,0841,106
definitionDH845563|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K24, 5' end.DH845564|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,893,652 - 59,894,201)(59,723,476 - 59,724,596)
sequence
tgggttccacatttgtatatacaacaaaccataaactaaaaatacttgag
agaaaccaagaaaatttcaaagacaaaacctcggtttttcatgcactaac
cactacaatggatcgccatgaaggaagtgatgtttaggaagtccagcgca
gcacctgtcatccacagattttcagtctctctcaaggtcaggtgacaagg
tgtcatacatgtgtaatacataagtagaactatggtgatttattcatatt
gcatgtgtatagacttagtttttggtctttattttctaagcaatatggta
ataagaactatttatactgcatttaaattgtattatcattataagtaatc
taaagatgatttttacagaaatagagataatttgaagtatttggaaaggt
atgcatggaatgtatgtaaacactgtgccatttcatgcttcaaggcacct
gctgtattgggttttttttttttttcttatatctctgataaagtgtaact
taaaaaattaggcataggcatagcaagaggtcaatgataagtaataacaa
aataatttacaaaaacagagagtactaaaattgtcagcactactctaatc
atttgggaccattactaaataaataaaatgacatcagcacccgtgatacc
acaaccatcaacctgacaactgagacagctattaagcacctacaaggcaa
ggttcaatgctgtggcagacaccatggttaaggcaaacttatgaaagaaa
gcatttaactgaggccttgcttacagtttcagaagattagtccatgatca
tcatggcaggaaacaatcagacaaggtgctgaagtggtagctgagaactt
tacattctgatccacaggctacagacagcagcagagagagactgggccta
cccccagtgacacctcctccaacaggccacacctcctaatccgctccact
catggggacaagcattcaatatatgagcctatgcaagccactctcattca
atccaccacagaaccatgcatatgaatacgctgaacaatagctattgaca
tctccaattgagtgtagtcgaatgggctggtgat
gaattccagaagggaatgccaaagatgttttaacaaacaatcctcgtgaa
tggctaaggacatggctcaatggttaacagcactgactgcttttccagag
gacctaggttcagctcccagtatccacatgtcagctaacaatcataccta
actccagttccaggagatttgatgctattatgacctccagaggcaccagg
catgtacatggtacatatacatgcatgtaagcagagcacccattcacata
aaataaatctttaaaaaacttagaagtcctggggcgtggtgttggcccac
gcctttaatcccagcacttggaaggcagaggcaggtggatttctgagttc
gaggccagcctggtctacagagtgagttccaggacagccagggctataca
gagaaaccctgtctcaaaaaaaacaaaaacaaaacaaaaaaaattagaaa
aatacttatgtaaggaatattatgtgttataacagagctaatataactaa
ctatataggagtatcacaatttgaaaaatggtttacttgcagagtgtggt
ggtatatacctttaatcccaggagtcagagaccatcctggtctacataat
aggaagttccagaatagtcagggttagagatcctgtctcaaaaagaagtt
ttacagttttgaatttccaactactcaactgtgaatactctaagcagaat
tatcctactgtttcaacatattataaaatagttgttataattgaactgct
tcattataatgggtttgcaatattcactagcaatatctcaatcaagatga
ccaaatatagccgggcgtggtggtgcatgccttttaatcccagcactggg
gaggcagaagaagcaggtgaatttctgagtttgaggtcagcctggtctac
aagtgagttcagaccgccagggctatacagagaatccctgtctcaaaata
agatatataaaaaaggacaaatatataacacctcttttctagaatcttaa
ggcattcaacacaactagaacagtaactgctttaatttaaaagtttctat
actatggatgataaacattttaaatatacacatttatttctgcaactcaa
gctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59893652_59894201
seq2: B6Ng01-009K24.b_595_1137 (reverse)

seq1  TCACCAGCCCATTCGACATCACTTCATGTGAGATGTCAATAGCTATTGTT  50
      |||||||||||||||||  ||||  ||  |||||||||||||||||||||
seq2  TCACCAGCCCATTCGACTACACTCAATTGGAGATGTCAATAGCTATTGTT  50

seq1  CTAGCGTATTCATATGGCATGTGTTCTGTGGTGGTTTGAATGAGAGTGGC  100
      | ||||||||||||| ||||| |||||||||||| |||||||||||||||
seq2  C-AGCGTATTCATAT-GCATG-GTTCTGTGGTGGATTGAATGAGAGTGGC  97

seq1  TTGCATAGGCTCATATATTTGAATGCTTGGTCCCCATGAGTGGAGCGGAT  150
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TTGCATAGGCTCATATA-TTGAATGCTT-GTCCCCATGAGTGGAGCGGAT  145

seq1  TAGGAGGTGTGGCCTTGTTGGAGGAGGTGTCACTGGGGGTAGGCCCAGTC  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTGTGGCC-TGTTGGAGGAGGTGTCACTGGGGGTAGGCCCAGTC  194

seq1  TCTCTCTGCCTGCTGTCTGTAGCCTGTGGATCAGAATGTAAAGTTCTCAG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTG-CTGCTGTCTGTAGCCTGTGGATCAGAATGTAAAGTTCTCAG  243

seq1  CTACCACTTCAGCACCTTGTCTGATTGTTTCCTGCCATGATGATCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTTCAGCACCTTGTCTGATTGTTTCCTGCCATGATGATCATGGA  293

seq1  CTAATCTTCTGAAACTGTAAGCAAGGCCTCAGTTAAATGCTTTCTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTTCTGAAACTGTAAGCAAGGCCTCAGTTAAATGCTTTCTTTCAT  343

seq1  AAGTTTGCCTTAACCATGGTGTCTGCCACAGCATTGAACCTTGCCTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCCTTAACCATGGTGTCTGCCACAGCATTGAACCTTGCCTTGTA  393

seq1  GGTGCTTAATAGCTGTCTCAGTTGTCAGGTTGATGGTTGTGGTATCACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTAATAGCTGTCTCAGTTGTCAGGTTGATGGTTGTGGTATCACGG  443

seq1  GTGCTGATGTCATTTTATTTATTTAGTAATGGTCCCAAATGATTAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATGTCATTTTATTTATTTAGTAATGGTCCCAAATGATTAGAGTA  493

seq1  GTGCTGACAATTTTAGTACTCTCTGTTTTTGTAAATTATTTTGTTATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACAATTTTAGTACTCTCTGTTTTTGTAAATTATTTTGTTATTAC  543

seq1: chr1_59723476_59724596
seq2: B6Ng01-009K24.g_67_1172

seq1  GAATTCCAGAAGGGAATGCCAAAGATGTTTTAACAAACAATCCTCGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGGGAATGCCAAAGATGTTTTAACAAACAATCCTCGTGAA  50

seq1  TGGCTAAGGACATGGCTCAATGGTTAACAGCACTGACTGCTTTTCCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGGACATGGCTCAATGGTTAACAGCACTGACTGCTTTTCCAGAG  100

seq1  GACCTAGGTTCAGCTCCCAGTATCCACATGTCAGCTAACAATCATACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGTTCAGCTCCCAGTATCCACATGTCAGCTAACAATCATACCTA  150

seq1  ACTCCAGTTCCAGGAGATTTGATGCTATTATGACCTCCAGAGGCACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTCCAGGAGATTTGATGCTATTATGACCTCCAGAGGCACCAGG  200

seq1  CATGTACATGGTACATATACATGCATGTAAGCAGAGCACCCATTCACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACATGGTACATATACATGCATGTAAGCAGAGCACCCATTCACATA  250

seq1  AAATAAATCTTTAAAAAACTTAGAAGTCCTGGGGCGTGGTGTTGGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTTAAAAAACTTAGAAGTCCTGGGGCGTGGTGTTGGCCCAC  300

seq1  GCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTC  350

seq1  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACA  400

seq1  GAGAAACCCTGTCTCAAAAAAAACAAAAACAAAACAAAAAAAATTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCAAAAAAAACAAAAACAAAACAAAAAAAATTAGAAA  450

seq1  AATACTTATGTAAGGAATATTATGTGTTATAACAGAGCTAATATAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTATGTAAGGAATATTATGTGTTATAACAGAGCTAATATAACTAA  500

seq1  CTATATAGGAGTATCACAATTTGAAAAATGGTTTACTTGCAGAGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGGAGTATCACAATTTGAAAAATGGTTTACTTGCAGAGTGTGGT  550

seq1  GGTATATACCTTTAATCCCAGGAGTCAGAGACCATCCTGGTCTACATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATACCTTTAATCCCAGGAGTCAGAGACCATCCTGGTCTACATAAT  600

seq1  AGGAAGTTCCAGAATAGTCAGGGTTAGAGATCCTGTCTCAAAAAGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTCCAGAATAGTCAGGGTTAGAGATCCTGTCTCAAAAAGAAGTT  650

seq1  TTACAGTTTTGAATTTCCAACTACTCAACTGTGAATACTCTAAGCAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTTGAATTTCCAACTACTCAACTGTGAATACTCTAAGCAGAAT  700

seq1  TATCCTACTGTTTCAACATATTATAAAATAGTTGTTATAATTGAACTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTACTGTTTCAACATATTATAAAATAGTTGTTATAATTGAACTGCT  750

seq1  TCATTATAATGGGTTTGCAATATTCACTAGCAATATCTCAATCAAGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAATGGGTTTGCAATATTCACTAGCAATATCTCAATCAAGATGA  800

seq1  CCAAATATAGCCGGGCGTGGTGGTGCATGCC-TTTAATCCCAGCACTGGG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAAATATAGCCGGGCGTGGTGGTGCATGCCTTTTAATCCCAGCACTGGG  850

seq1  GAGGCAGAAGAAGCAGGTGAATTTCTGAGTTTGAGGCCAGCCTGGTCTAC  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGCAGAAGAAGCAGGTGAATTTCTGAGTTTGAGGTCAGCCTGGTCTAC  900

seq1  AAAGTGAGTTCCAGGACCGCCAGGGCTATACAGAGAAACCCTGTCTCAAA  949
       ||||||||||   ||||||||||||||||||||||| |||||||||   
seq2  -AAGTGAGTTC--AGACCGCCAGGGCTATACAGAGAATCCCTGTCTC---  944

seq1  AAAAAAAAAAAAAAAAAAAAAAAAGACCAAATATATAACACTCCTCTCCT  999
          |||| || | | | |||||||  ||||||||||||||  || | ||
seq2  ----AAAATAAGATATATAAAAAAGGACAAATATATAACACCTCTTTTCT  990

seq1  AGAATACTTAAGGCATTCAACACAAACTAG-ACAGTAAACTGCTTTAGTT  1048
      ||||| ||||||||||||||||| |||||| ||||| |||||||||| ||
seq2  AGAAT-CTTAAGGCATTCAACAC-AACTAGAACAGT-AACTGCTTTAATT  1037

seq1  TAATATGTTCTATAATATGAATGATAAACATTTT-AATATACAACCATTT  1097
      ||| |  ||||||| |||| |||||||||||||| ||||||||  |||||
seq2  TAAAAGTTTCTATACTATGGATGATAAACATTTTAAATATACA--CATTT  1085

seq1  ATTTTCCTGCAAACTCAAGCTGTT  1121
      ||||  |||| |||||||||||||
seq2  ATTT--CTGC-AACTCAAGCTGTT  1106