BAC Information

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BAC

Clone NameB6Ng01-010F22
Chromosome1 (Build37)
Map Location 61,638,172 - 61,772,736
singlet/doubletdoublet
Overlap genePard3b
Upstream geneLOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010F22.bB6Ng01-010F22.g
ACCDH846055DH846056
length9701,218
definitionDH846055|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F22, 5' end.DH846056|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,638,172 - 61,639,156)(61,771,504 - 61,772,736)
sequence
gaattctttgtttagctctgtgccccatgttttaatagggttatttggct
ctctggagtttaacttcttgagttctttgtatatattggatattagccct
ctatcagatgtatgattggtaaagatcttttcccaatctgttggttgcta
ttttgttctactgacagtgtcctttgccttacagaagctttgcaatttta
tgaggtcctatttgtcaattcttgatcttagagcataagctatttgtgtt
ctgttcaggaaattttcctctatgcccatgtgctcgaggctcttccccat
ttcttttctattagtttcagtatatctgggtttatgtggaggtccttgat
ccacttggacttgagctatattttcactcagttgattgatatagagagat
ctgtaagaacagaactctgtactttataccaaataacaccttatcatgga
aagccattggaagaataaccaatactactttgtctgtggttgaagaatag
gaataaacaaaccagaaacctagttatcaacaccaaacgaatcaaaatca
gtcaaaatgcacacacttaatttatataccaagcaaagtttatatatatt
aaataatttatgtttagacttaagtattctttaagttttctcactggaaa
ttatcttcaaaagaatattaaaaacacatccacattctttacacatgtca
ggagtatattaaggtgaaacttttatagaaatggtgtaaccttgtctttg
gaattcgctgaagcacacaaataatgctgtggtcttctggttacatgaag
cacttggtacattaactttagaatatttttttatgtgataaatataaaga
aaggcatcacatgaataagtttataattgacttttggtgtcaaatgaaga
aggggagagaatgctatagcttgtattcctactccatcgatgctggactc
tgggattttttttagtctcc
gaattctgaagagcaaacaggctgagcctagtcctatacacatgcattct
gtccacaagcttaattccaaccttggctagcaataactactaaaacacaa
ggcaaagtatattcctatgaatttgaacactttttttaaccttagatagt
tttagaatttccccttcttaatatttctaaataaaatgttttattattct
tgatgtaaagttttccttttacagattctacaaagagctaccatctcaaa
ggggattttattagacatcagaattgttttgaggtacaatagaggctgat
ttcttagaaattcaagcactagaagattatctctgtgacaactggtacta
agcacacttacttccagtattctaaataacagaatagttccaaaagaata
cattttgttgtcataattacaaagtaatgataattatatttgaaagtgtt
attagaaccaagagtatgaattacaactctggtgtgtccaaagacaaata
tatgcctgacacaagtagttggaactcaggagagctcaccattcatgtaa
aaaaggactcacataggcactgtaactacattgattcagttttcatctat
aataaacaggggacaactagcagcatagcactaattaggggataaaataa
attttcaaaaagcaatataaaaaatacaaaatgtttttcaatataagtat
atatttcacccagttctactgttcacttgaggctcatatagcctcattta
aaatcttgtactcagttcactcaaaatacattttgcaactcttccttcta
tgtttaccattccttaaacgttctgatggcatacttatccatttgattac
aggccacaaaagttcactaatcaattccaactctatcatttgaattacac
tgccttattatatagcaatagttatcattttgtttagtgtaggatccctg
gctcttgatttactctcaaacccagcacagcctctatccattgcagattc
ttgatgtttgcaaactgccaacaactcaagcattcccttaatgtggacta
acgtctcaagtagaatgatagactctagttgaagaaatgcacaattccca
ctcattaaagaacctgttgtaaatcctgagttatagaacccacgaagggt
aaatttgccagctggtactgaactactcgatatcttccatcgacctaaag
ggacaataggacgatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61638172_61639156
seq2: B6Ng01-010F22.b_42_1011

seq1  GAATTCTTTGTTTAGCTCTGTGCCCCATGTTTTAATAGGGTTATTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTGCCCCATGTTTTAATAGGGTTATTTGGCT  50

seq1  CTCTGGAGTTTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTTTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCT  100

seq1  CTATCAGATGTATGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATGTATGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCTA  150

seq1  TTTTGTTCTACTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTACTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCTATTTGTCAATTCTTGATCTTAGAGCATAAGCTATTTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCTATTTGTCAATTCTTGATCTTAGAGCATAAGCTATTTGTGTT  250

seq1  CTGTTCAGGAAATTTTCCTCTATGCCCATGTGCTCGAGGCTCTTCCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAAATTTTCCTCTATGCCCATGTGCTCGAGGCTCTTCCCCAT  300

seq1  TTCTTTTCTATTAGTTTCAGTATATCTGGGTTTATGTGGAGGTCCTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTATTAGTTTCAGTATATCTGGGTTTATGTGGAGGTCCTTGAT  350

seq1  CCACTTGGACTTGAGCTATATTTTCACTCAGTTGATTGATATAGAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGACTTGAGCTATATTTTCACTCAGTTGATTGATATAGAGAGAT  400

seq1  CTGTAAGAACAGAACTCTGTACTTTATACCAAATAACACCTTATCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAACAGAACTCTGTACTTTATACCAAATAACACCTTATCATGGA  450

seq1  AAGCCATTGGAAGAATAACCAATACTACTTTGTCTGTGGTTGAAGAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGGAAGAATAACCAATACTACTTTGTCTGTGGTTGAAGAATAG  500

seq1  GAATAAACAAACCAGAAACCTAGTTATCAACACCAAACGAATCAAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACAAACCAGAAACCTAGTTATCAACACCAAACGAATCAAAATCA  550

seq1  GTCAAAATGCACACACTTAATTTATATACCAAGCAAAGTTTATATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATGCACACACTTAATTTATATACCAAGCAAAGTTTATATATATT  600

seq1  AAATAATTTATGTTTAGACTTAAGTATTCTTTAAGTTTTCTCACTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTATGTTTAGACTTAAGTATTCTTTAAGTTTTCTCACTGGAAA  650

seq1  TTATCTTCAAAAGAATATTAAAAACACATCCACATTCTTTACACATGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCAAAAGAATATTAAAAACACATCCACATTCTTTACACATGTCA  700

seq1  GGAGTATATTAAGGTGAAACTTTTATAGAAATGGTGTAACCTTGTCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATATTAAGGTGAAACTTTTATAGAAATGGTGTAACCTTGTCTTTG  750

seq1  GAATTCGCTGAAGCACACAAATAATGCTGTGGTCTTCTGGTTACATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGCTGAAGCACACAAATAATGCTGTGGTCTTCTGGTTACATGAAG  800

seq1  CACTTGGTACATTAACTTTAGAATATTTTTTTAATGTGGATAAATATAAA  850
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CACTTGGTACATTAACTTTAGAATATTTTTTT-ATGT-GATAAATATAAA  848

seq1  GAAAGGCATCACATGAAATAAGTTTATAATTGACTTTTGTTGTCAAAATG  900
      ||||||||||||||| ||||||||||||||||||||||| |||| |||||
seq2  GAAAGGCATCACATG-AATAAGTTTATAATTGACTTTTGGTGTC-AAATG  896

seq1  AAGAAGGGGGAAGAGATATGCTATAGCTTGTTTTCCTAACTCCCATCCAA  950
      |||||||||  ||||| |||||||||||||| ||||| ||| |||| | |
seq2  AAGAAGGGG--AGAGA-ATGCTATAGCTTGTATTCCT-ACT-CCAT-CGA  940

seq1  TGCTTGGGACTTTTGGGATTTTTTTTTAAGTCTCC  985
      ||||  |||| | |||||||||||||  |||||||
seq2  TGCT--GGAC-TCTGGGATTTTTTTT--AGTCTCC  970

seq1: chr1_61771504_61772736
seq2: B6Ng01-010F22.g_64_1281 (reverse)

seq1  CCCATC--CCTA-TGTCCCTTTAGGCCGTGGGAAGA-ATCACTGATGAGT  46
      ||||||  |||| |||||||||||| ||  |||||| |||   ||  |||
seq2  CCCATCGTCCTATTGTCCCTTTAGGTCGATGGAAGATATC---GAGTAGT  47

seq1  TCATGTGTAACCAGACTTGGCATA-TTACCCTCTGTTGGTTTTCATAAAC  95
      |||   || |||||   ||||| | |||||||  || |||| | || |||
seq2  TCA---GT-ACCAG--CTGGCAAATTTACCCTTCGTGGGTTCT-AT-AAC  89

seq1  TCAAAGATTTTACAAACAGGTCTTTTAAATGAGTGGGAA-TGTGCCATTT  144
      ||  ||  ||||| ||||||| | || |||||||||||| |||| |||||
seq2  TC--AGGATTTAC-AACAGGT-TCTTTAATGAGTGGGAATTGTG-CATTT  134

seq1  CTTCATACTAGAGTTCTATCA-TCTACTTTGAGAAGGTAAGTCACACTAA  193
      ||||| ||||||| ||||||| ||||| |||||| | ||   |||| |||
seq2  CTTCA-ACTAGAG-TCTATCATTCTAC-TTGAGACGTTAGTCCACATTAA  181

seq1  GGGGAATGCTTGAGTTGTTGGCAGTTTGCAAACATCAAGAATCTGCAATG  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGAATGCTTGAGTTGTTGGCAGTTTGCAAACATCAAGAATCTGCAATG  230

seq1  GATTAGAGGCTGTGCTGGGTTTGAGAGTAAATCAAGAGCCAGGGATCCTA  293
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TAGAGGCTGTGCTGGGTTTGAGAGTAAATCAAGAGCCAGGGATCCTA  279

seq1  CACTAAACAAAAATGATAACTATTGCTATATAATAAGGCAGTGTAATTCA  343
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAC-AAAATGATAACTATTGCTATATAATAAGGCAGTGTAATTCA  328

seq1  AATGATAGAGTTGGAATTGATTAGTGAACTTTTGTGGCCTGTAATCAAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGAGTTGGAATTGATTAGTGAACTTTTGTGGCCTGTAATCAAAT  378

seq1  GGATAAGTATGCCATCAGAACGTTTAAGGAATGGTAAACATAGAAGGAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTATGCCATCAGAACGTTTAAGGAATGGTAAACATAGAAGGAAG  428

seq1  AGTTGCAAAATGTATTTTGAGTGAACTGAGTACAAGATTTTAAATGAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAAAATGTATTTTGAGTGAACTGAGTACAAGATTTTAAATGAGGC  478

seq1  TATATGAGCCTCAAGTGAACAGTAGAACTGGGTGAAATATATACTTATAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGCCTCAAGTGAACAGTAGAACTGGGTGAAATATATACTTATAT  528

seq1  TGAAAAACATTTTGTATTTTTTATATTGCTTTTTGAAAATTTATTTTATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACATTTTGTATTTTTTATATTGCTTTTTGAAAATTTATTTTATC  578

seq1  CCCTAATTAGTGCTATGCTGCTAGTTGTCCCCTGTTTATTATAGATGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTAGTGCTATGCTGCTAGTTGTCCCCTGTTTATTATAGATGAAA  628

seq1  ACTGAATCAATGTAGTTACAGTGCCTATGTGAGTCCTTTTTTACATGAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCAATGTAGTTACAGTGCCTATGTGAGTCCTTTTTTACATGAAT  678

seq1  GGTGAGCTCTCCTGAGTTCCAACTACTTGTGTCAGGCATATATTTGTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTCTCCTGAGTTCCAACTACTTGTGTCAGGCATATATTTGTCTT  728

seq1  TGGACACACCAGAGTTGTAATTCATACTCTTGGTTCTAATAACACTTTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACACCAGAGTTGTAATTCATACTCTTGGTTCTAATAACACTTTCA  778

seq1  AATATAATTATCATTACTTTGTAATTATGACAACAAAATGTATTCTTTTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTATCATTACTTTGTAATTATGACAACAAAATGTATTCTTTTG  828

seq1  GAACTATTCTGTTATTTAGAATACTGGAAGTAAGTGTGCTTAGTACCAGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTCTGTTATTTAGAATACTGGAAGTAAGTGTGCTTAGTACCAGT  878

seq1  TGTCACAGAGATAATCTTCTAGTGCTTGAATTTCTAAGAAATCAGCCTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGAGATAATCTTCTAGTGCTTGAATTTCTAAGAAATCAGCCTCT  928

seq1  ATTGTACCTCAAAACAATTCTGATGTCTAATAAAATCCCCTTTGAGATGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACCTCAAAACAATTCTGATGTCTAATAAAATCCCCTTTGAGATGG  978

seq1  TAGCTCTTTGTAGAATCTGTAAAAGGAAAACTTTACATCAAGAATAATAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTTGTAGAATCTGTAAAAGGAAAACTTTACATCAAGAATAATAA  1028

seq1  AACATTTTATTTAGAAATATTAAGAAGGGGAAATTCTAAAACTATCTAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTATTTAGAAATATTAAGAAGGGGAAATTCTAAAACTATCTAAG  1078

seq1  GTTAAAAAAAGTGTTCAAATTCATAGGAATATACTTTGCCTTGTGTTTTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAGTGTTCAAATTCATAGGAATATACTTTGCCTTGTGTTTTA  1128

seq1  GTAGTTATTGCTAGCCAAGGTTGGAATTAAGCTTGTGGACAGAATGCATG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATTGCTAGCCAAGGTTGGAATTAAGCTTGTGGACAGAATGCATG  1178

seq1  TGTATAGGACTAGGCTCAGCCTGTTTGCTCTTCAGAATTC  1233
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGGACTAGGCTCAGCCTGTTTGCTCTTCAGAATTC  1218