BAC Information

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BAC

Clone NameB6Ng01-010G21
Chromosome1 (Build37)
Map Location 164,005,351 - 164,093,784
singlet/doubletdoublet
Overlap geneDnm3, LOC100039703
Upstream geneCenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc
Downstream geneDnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010G21.bB6Ng01-010G21.g
ACCDH846100DH846101
length1,0461,086
definitionDH846100|Mus musculus domesticus DNA, BAC clone: B6Ng01-010G21, 5' end.DH846101|Mus musculus domesticus DNA, BAC clone: B6Ng01-010G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,005,351 - 164,006,419)(164,092,691 - 164,093,784)
sequence
gaattcatcaaggatgtaggagccaagtcaaatgttgaccccaccctcct
cctccattttaaggccccttcaaagccagtgaacggatcgagttcagttt
tgccaacaaagcctgccatactgccctttaaggctccagtttggaggttt
tataactgcacaagctttgatttggggtcagttcttcagctacactgagt
tccatcagtttgaggaacccttctgtgacaaatccttaccattcctttgc
tcagagttggtctttttcttttgcgtgacccctctgacatgtcccataac
cagctctgaaaacataacttatttcccttccaagaaggccaaaacagagc
agccactgtggccatccacacacatttcccctgacatttgcattgcccca
tagactccttggaatggccagcagagggtggctatcccaagatacataga
atcacgtttgtcaagacagcatgcaggagcagaggctgggcatgcaggag
caggggccggggagacaggaaacacagaagagccgcactagggcagagaa
cttactttgttgctcccctgtgcatgcagtcacaaggaagggaaaaaaaa
gtgagagaaatatgttaaacacaaatttatttcaaaattatgaggttttt
ccttgctggatcggaatccgaatgaatagctgaacccttcgataacttcc
cattgtgtacatccagggctcacgcctgagtcagagaatccgtgtaggta
gggggagtgaagtcccgcgtttacaacagtgtggcgatatccctccattg
ctttctactcagaatacttgggctatgggagccaagccagaaagaattgg
tttgaatcggtaataagtgaaccgctagcataaaaggcagagaagtcagt
gtgctggctcgtctttcctgacagcccttcctccaacatgccagcatgga
aaatttcatcagtcattacttatttttttaacaacaaacaaacaaacaac
caaacaaacaaaacacaacagcctgcattcttgtttcacaaggtgg
gaattcctggtgagctagcgagggtaaatgcattgaagaaagagtggtca
agtagcaaagtaagggctatcaattatgcgattctcaaattctcccttcc
ctagcagtttccatatcctttctggaagctggcaagccactcggtgcctg
gtatcagtgccatctcagctagacggcacgtccaggccagccactgctac
tgggagattccttcctgcacagtcagatgagccagtggtcaggaattccg
aagttcctcaataaagctggtgtgtgtctcctgttgatgtgtgatcactg
gacacacttcatgtgatgggaaatgaagacttttctatcttcgctctgca
gaagagagaagctgtccctcatcctagaactgggagcctcaccgaagtga
tgtggccctttgtgagcaccccatttcccaagtggtccatagcttatgtg
tgtgggagtgaatgccatgcaggttgccatgggacaaggtaaaggatgct
atttaaggacaccaagcctcttgttttgtgttgcccaaagggtctagaaa
ggaggcaatggtgtctttgtatactggttttagaagtagttcctttaacg
ctgcaagctgattttcttttattagtacagatgttcacaaagtccatggt
caacatgggatggattccagaccagaaagaagaaagagaaagcgtgcagc
ctcctagtcagaacggtggaaagagaaccctcccttaacctccttcacgc
ttgcctgtccccagcacgtacactcatgctgccgtctgaaagtgagacac
cccagccttggaacaagccttagaaatcctagagcctgtcattaactctg
tcctagatgaggagatcaaggagcagtgaggcaagctagttttccagggc
caaagagctgtgtagaggaagagatctgagttcccagcaggctttgcagc
tggccgagtatgaccttgtatgttctctacccactgtcctttccacttct
ttgtgtccccaatacaagaaagcatcagcaggcaaggcaaagcagggttt
gctttttaaagaaactctgcacacaaaccaacgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164005351_164006419
seq2: B6Ng01-010G21.b_43_1088

seq1  GAATTCATCAAGGATGTAGGAGCCAAGTCAAATGTTGACCCCACCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAGGATGTAGGAGCCAAGTCAAATGTTGACCCCACCCTCCT  50

seq1  CCTCCATTTTAAGGCCCCTTCAAAGCCAGTGAACGGATCGAGTTCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTTAAGGCCCCTTCAAAGCCAGTGAACGGATCGAGTTCAGTTT  100

seq1  TGCCAACAAAGCCTGCCATACTGCCCTTTAAGGCTCCAGTTTGGAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAAAGCCTGCCATACTGCCCTTTAAGGCTCCAGTTTGGAGGTTT  150

seq1  TATAACTGCACAAGCTTTGATTTGGGGTCAGTTCTTCAGCTACACTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCACAAGCTTTGATTTGGGGTCAGTTCTTCAGCTACACTGAGT  200

seq1  TCCATCAGTTTGAGGAACCCTTCTGTGACAAATCCTTACCATTCCTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGTTTGAGGAACCCTTCTGTGACAAATCCTTACCATTCCTTTGC  250

seq1  TCAGAGTTGGTCTTTTTCTTTTGCGTGACCCCTCTGACATGTCCCATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTGGTCTTTTTCTTTTGCGTGACCCCTCTGACATGTCCCATAAC  300

seq1  CAGCTCTGAAAACATAACTTATTTCCCTTCCAAGAAGGCCAAAACAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAAAACATAACTTATTTCCCTTCCAAGAAGGCCAAAACAGAGC  350

seq1  AGCCACTGTGGCCATCCACACACATTTCCCCTGACATTTGCATTGCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGTGGCCATCCACACACATTTCCCCTGACATTTGCATTGCCCCA  400

seq1  TAGACTCCTTGGAATGGCCAGCAGAGGGTGGCTATCCCAAGATACATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCTTGGAATGGCCAGCAGAGGGTGGCTATCCCAAGATACATAGA  450

seq1  ATCACGTTTGTCAAGACAGCATGCAGGAGCAGAGGCTGGGCATGCAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTTTGTCAAGACAGCATGCAGGAGCAGAGGCTGGGCATGCAGGAG  500

seq1  CAGGGGCCGGGGAGACAGGAAACACAGAAGAGCCGCACTAGGGCAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCGGGGAGACAGGAAACACAGAAGAGCCGCACTAGGGCAGAGAA  550

seq1  CTTACTTTGTTGCTCCCCTGTGCATGCAGTCACAAGGAAGGGAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTGTTGCTCCCCTGTGCATGCAGTCACAAGGAAGGGAAAAAAAA  600

seq1  GTGAGAGAAATATGTTAAACACAAATTTATTTCAAAATTATGAGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAATATGTTAAACACAAATTTATTTCAAAATTATGAGGTTTTT  650

seq1  CCTTGCTGGATCGGAATCCGAATGAATAGCTGAACCCTTCGATAACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGATCGGAATCCGAATGAATAGCTGAACCCTTCGATAACTTCC  700

seq1  CATTGTGTACATCCAGGGCTCAGGCCTGAGTCAGAGAATCCGTGTAGGTA  750
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATTGTGTACATCCAGGGCTCACGCCTGAGTCAGAGAATCCGTGTAGGTA  750

seq1  GGGGGAGTGAAGTCCCGCGTTTACAACAGTGTGGCGATATCCCTCCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTGAAGTCCCGCGTTTACAACAGTGTGGCGATATCCCTCCATTG  800

seq1  CTTTCTACTCAGAATACTTGGGCTATGGGAGCCAAGCCAGAAAGAATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTCAGAATACTTGGGCTATGGGAGCCAAGCCAGAAAGAATTGG  850

seq1  TTTGAATCGGTAATAAGTGAACCGCTAGCATAAAAGGCAGAGAAGTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCGGTAATAAGTGAACCGCTAGCATAAAAGGCAGAGAAGTCAGT  900

seq1  GTGCTGGCTCGTCTTTCCTGACAGCCCTTCCTCCAACATGCCAAGCATGG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGCTGGCTCGTCTTTCCTGACAGCCCTTCCTCCAACATGCC-AGCATGG  949

seq1  AAAATTTCATCAGTCATTACTTTATTTTTTTTAAAACAAAACAAAACAAA  1000
      |||||||||||||||||||| |||||||||| | ||||||        ||
seq2  AAAATTTCATCAGTCATTAC-TTATTTTTTTAACAACAAA-------CAA  991

seq1  ACAAAACAAAACAAAACAAAACAAAAAACAACAAAACAAGCACTGCATTC  1050
      ||||   | ||| |||| |||||||| |||||      ||| ||||||||
seq2  ACAA---ACAACCAAAC-AAACAAAACACAAC------AGC-CTGCATTC  1030

seq1  TTGGTTTCAACGAAGGTGG  1069
      || ||||||   |||||||
seq2  TT-GTTTCA--CAAGGTGG  1046

seq1: chr1_164092691_164093784
seq2: B6Ng01-010G21.g_63_1148 (reverse)

seq1  TTACG-TGGTTTGTGTGCAGAGCTTCTCTCTAAAAGCAGACCCTTGCCTT  49
      ||||| |||||||||||||||| |||| |  ||||||| |||| ||| ||
seq2  TTACGTTGGTTTGTGTGCAGAGTTTCT-TTAAAAAGCAAACCC-TGCTTT  48

seq1  GCCTTGCCTTGCTGGTGGCTTTCTTGTATTTGGGGGACACAAAGGAAGTG  99
      |||||||| ||||| | |||||||||||||  ||||||||||| ||||||
seq2  GCCTTGCC-TGCTGAT-GCTTTCTTGTATT--GGGGACACAAA-GAAGTG  93

seq1  GAAAGGACAGTGGGTAGAGAACATACAAGGTCATACTCGGCCAGCTGCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACAGTGGGTAGAGAACATACAAGGTCATACTCGGCCAGCTGCAA  143

seq1  AGCCTGCTGGGAACTCAGATTCTCTTCCTCTACACAGCTCTTTGGCCCTG  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCCTGCTGGGAACTCAGA-TCTCTTCCTCTACACAGCTCTTTGGCCCTG  192

seq1  GAAAACTTAGCTTGCCTCACTGCTCCTTGATCTCCTCATCTAGGACAGAG  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAC-TAGCTTGCCTCACTGCTCCTTGATCTCCTCATCTAGGACAGAG  241

seq1  TTAATGACAGGCTCTAGGATTTCTAAGGCTTGTTCCAAGGCTGGGGTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACAGGCTCTAGGATTTCTAAGGCTTGTTCCAAGGCTGGGGTGTC  291

seq1  TCACTTTCAGACGGCAGCATGAGTGTACGTGCTGGGGACAGGCAAGCGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCAGACGGCAGCATGAGTGTACGTGCTGGGGACAGGCAAGCGTG  341

seq1  AAGGAGGTTAAGGGAGGGTTCTCTTTCCACCGTTCTGACTAGGAGGCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTAAGGGAGGGTTCTCTTTCCACCGTTCTGACTAGGAGGCTGC  391

seq1  ACGCTTTCTCTTTCTTCTTTCTGGTCTGGAATCCATCCCATGTTGACCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTCTCTTTCTTCTTTCTGGTCTGGAATCCATCCCATGTTGACCAT  441

seq1  GGACTTTGTGAACATCTGTACTAATAAAAGAAAATCAGCTTGCAGCGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGTGAACATCTGTACTAATAAAAGAAAATCAGCTTGCAGCGTTA  491

seq1  AAGGAACTACTTCTAAAACCAGTATACAAAGACACCATTGCCTCCTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTACTTCTAAAACCAGTATACAAAGACACCATTGCCTCCTTTCT  541

seq1  AGACCCTTTGGGCAACACAAAACAAGAGGCTTGGTGTCCTTAAATAGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTTGGGCAACACAAAACAAGAGGCTTGGTGTCCTTAAATAGCAT  591

seq1  CCTTTACCTTGTCCCATGGCAACCTGCATGGCATTCACTCCCACACACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTTGTCCCATGGCAACCTGCATGGCATTCACTCCCACACACAT  641

seq1  AAGCTATGGACCACTTGGGAAATGGGGTGCTCACAAAGGGCCACATCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGGACCACTTGGGAAATGGGGTGCTCACAAAGGGCCACATCACT  691

seq1  TCGGTGAGGCTCCCAGTTCTAGGATGAGGGACAGCTTCTCTCTTCTGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGAGGCTCCCAGTTCTAGGATGAGGGACAGCTTCTCTCTTCTGCAG  741

seq1  AGCGAAGATAGAAAAGTCTTCATTTCCCATCACATGAAGTGTGTCCAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAGATAGAAAAGTCTTCATTTCCCATCACATGAAGTGTGTCCAGTG  791

seq1  ATCACACATCAACAGGAGACACACACCAGCTTTATTGAGGAACTTCGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACATCAACAGGAGACACACACCAGCTTTATTGAGGAACTTCGGAA  841

seq1  TTCCTGACCACTGGCTCATCTGACTGTGCAGGAAGGAATCTCCCAGTAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCACTGGCTCATCTGACTGTGCAGGAAGGAATCTCCCAGTAGC  891

seq1  AGTGGCTGGCCTGGACGTGCCGTCTAGCTGAGATGGCACTGATACCAGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGGCCTGGACGTGCCGTCTAGCTGAGATGGCACTGATACCAGGC  941

seq1  ACCGAGTGGCTTGCCAGCTTCCAGAAAGGATATGGAAACTGCTAGGGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTGGCTTGCCAGCTTCCAGAAAGGATATGGAAACTGCTAGGGAAG  991

seq1  GGAGAATTTGAGAATCGCATAATTGATAGCCCTTACTTTGCTACTTGACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTGAGAATCGCATAATTGATAGCCCTTACTTTGCTACTTGACC  1041

seq1  ACTCTTTCTTCAATGCATTTACCCTCGCTAGCTCACCAGGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTTCAATGCATTTACCCTCGCTAGCTCACCAGGAATTC  1086